jianmu
/
lammps
forked from lijiext/lammps
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity
13,454 Commits 9 Branches 198 Tags 1.1 GiB
Commit Graph

4105 Commits

Author SHA1 Message Date
Steve Plimpton efaa4c6710 new neigh_modify exclude option, other SNAP changes 2017-03-07 09:31:12 -07:00
Richard Berger 21be86c423 Fix typos in txt2html 2017-03-07 00:58:03 -05:00
Richard Berger 007f3c66a0 Third batch of spelling fixes in manual 2017-03-07 00:51:31 -05:00
Richard Berger 32708860a9 Add remaining false positives 2017-03-07 00:27:35 -05:00
Richard Berger fc9eebb936 Added spellcheck utility to documentation build 
Uses the sphinxcontrib-spelling extension and requires PyEnchant and
aspell-en to be installed.

Adds the optional make target 'spelling' which produces the file
spelling/output.txt. It contains all words it detects.

Due to the large number of false positives, words in
utils/sphinx-config/false_positives.txt are ignored.
 2017-03-05 21:23:41 -05:00
Richard Berger 084d831bce Second batch of spelling fixes in manual 2017-03-05 21:02:51 -05:00
Richard Berger fd78486086 First batch of spelling fixes in manual 2017-03-05 18:27:38 -05:00
Jaap Kroes 8a0e44db83 updated documentation and ev_tally 2017-03-01 16:13:44 +01:00
Axel Kohlmeyer 3ac74a1d69 update lammps.book file for latest doc changes 2017-02-28 11:21:18 -05:00
Axel Kohlmeyer 3605208a45 add a few more missing details for integrating pair style kolmogorov/crespi/z 2017-02-28 11:16:27 -05:00
Axel Kohlmeyer 9b01949cac make the introduction of the command-by-category list less confusing 2017-02-28 11:05:40 -05:00
Jaap Kroes 323570c920 added jpg for kolmogorov-crespi-z equations and fixed hybrid/overlay check in source 2017-02-28 15:39:01 +01:00
Jaap Kroes a1b40b902d Added Kolmogorov-Crespi potential 2017-02-28 14:59:13 +01:00
Axel Kohlmeyer 2708c86836 fix typos: moleclue -> molecule 
this closes #386
 2017-02-27 18:03:18 -05:00
Oliver Henrich 458b6749e7 Corrected comment in 3' to 5' directionality check. 2017-02-22 20:03:41 +00:00
Axel Kohlmeyer 20a9ffe69d improve consistency and resolve dead links for USER-CGDNA related doc files 2017-02-21 21:27:34 -05:00
Steve Plimpton 49e83b4348 patch 21Feb17 sync with GHub 2017-02-21 16:07:26 -07:00
sjplimp b70c670aac Merge pull request #383 from stanmoore1/rshan_class2_kk 
Kokkos version of class2 bond, angle, dihedral, and improper from Ray Shan
 2017-02-21 15:52:10 -07:00
sjplimp 429264a12b Merge pull request #380 from hheenen/core_shell_documentation 
updated documentation and examples for coreshell
 2017-02-21 15:50:53 -07:00
Steve Plimpton 1cd4c48ccc new SNAP potential for W 2017-02-21 15:49:21 -07:00
Stan Moore ccaec315db Updating docs for Kokkos class2 2017-02-15 13:00:33 -07:00
Axel Kohlmeyer 0fb8dacc00 one more Finchham to Fincham change 2017-02-14 07:41:05 -05:00
Hendrik Heenen 6b923476b9 updated documentation and examples for coreshell 2017-02-14 13:14:22 +01:00
Steve Plimpton cb982f2f28 sync 13Feb17 patch back to GH 2017-02-13 09:05:03 -07:00
sjplimp 4843296d4e Merge pull request #372 from akohlmey/fft-cleanup 
simplify FFT3d code by removing support for outdated FFT libraries
 2017-02-13 08:53:13 -07:00
Steve Plimpton 2bdda8f6c0 patch 12Feb17 - change int to tagint for compute group/group 2017-02-13 08:40:54 -07:00
Steve Plimpton 0068ef5616 added molecule option to compute group/group command 2017-02-10 09:25:32 -07:00
Oliver Henrich 0efd209480 Merge branch 'master' into user-cgdna 2017-02-09 11:50:03 +00:00
Axel Kohlmeyer 8c074a363a Merge branch 'master' into small-updates-and-fixes 2017-02-08 14:32:44 -05:00
Axel Kohlmeyer 191453e1c7 Merge branch 'master' into fft-cleanup 2017-02-03 16:53:10 -05:00
Axel Kohlmeyer 6595fde0a1 explain in more detail the handling of error checking for numerical inputs 2017-02-02 11:58:12 -05:00
Axel Kohlmeyer 9d1991bf84 remove support for obsolete legacy FFT libraries and point -DFFT_FFTW to FFTW3 2017-02-02 08:10:23 -05:00
Stefan Paquay 0a87b7443a Updated contributing authors and docs 2017-02-02 13:42:47 +01:00
Oliver Henrich ed0a347fbf Merge branch 'master' into user-cgdna 2017-01-30 10:31:50 +00:00
Steve Plimpton f8506fee23 sync GHub with SVN 2017-01-26 14:06:43 -07:00
Oliver Henrich 149f37e764 Corrected reference to Fig.1 2017-01-26 19:08:59 +00:00
Steve Plimpton caea8973a3 add neighbor list kind output to screen 2017-01-20 13:24:09 -07:00
Steve Plimpton 9a299875da simplified neighbor list copying to avoid possible same-timestep re-build issues 2017-01-19 17:01:15 -07:00
sjplimp 3af4b3c28c Merge pull request #337 from ohenrich/user-cgdna 
Added source code and documentation for USER-CGDNA
 2017-01-18 11:31:35 -07:00
Steve Plimpton d2fc88a626 patch 17Jan17 2017-01-17 10:14:53 -07:00
sjplimp c19d2011bb Merge pull request #334 from sstrong99/flow_gauss_changeRef 
Updated the reference for the flow/gauss method
 2017-01-17 09:12:22 -07:00
sjplimp 973bef4d45 Merge pull request #332 from akohlmey/coord-atom-orientorder-atom-enhancements 
Coord atom orientorder atom enhancements
 2017-01-17 09:11:45 -07:00
sjplimp 252e07e083 Merge pull request #330 from akohlmey/collected-small-bugfixes 
Collected small bugfixes
 2017-01-17 09:08:00 -07:00
sjplimp d8bc590aaf Merge pull request #327 from stanmoore1/kokkos_lib_update 
Updating Kokkos lib
 2017-01-17 09:04:12 -07:00
sjplimp c9bea60710 Merge pull request #326 from Pakketeretet2/github-tutorial-update 
Updated images of succesful merge.
 2017-01-17 09:03:46 -07:00
Steve Plimpton 5cd856c97f fix spring doc page update 2017-01-17 09:02:56 -07:00
Axel Kohlmeyer 98ceb6feb1 add missing html files to lammps.book 2017-01-13 18:11:23 -05:00
Axel Kohlmeyer 374abea0f0 some minor documentation integration tweaks for USER-CGDNA package 2017-01-13 18:09:45 -05:00
Oliver Henrich 96259ea2d2 Added source code and documentation for USER-CGDNA 2017-01-13 13:36:54 +00:00
Steven Strong 1229f6f60b Updated the reference for the flow/gauss method, the new reference is much more comprehensive 2017-01-12 10:15:18 -07:00
Axel Kohlmeyer 6950a99162 Revert "remove obsolete warning about fix rigid image flag restrictions" 
This reverts commit 51e52b477a.
 2017-01-11 19:49:58 -05:00
Axel Kohlmeyer 1d0e600ab7 formatting improvements and small corrections for timer settings and output discussions 2017-01-10 23:47:14 -05:00
Axel Kohlmeyer 95706ac846 import contributed code for computes coord/atom and orientorder/atom 2017-01-10 12:29:22 -05:00
Axel Kohlmeyer 0db2a07993 another workaround for duplicate labels (which sphinx does not like) 2017-01-09 17:51:19 -05:00
Axel Kohlmeyer 33412c76ed correct some formatting issues with USER-NC-DUMP 2017-01-09 17:50:49 -05:00
Axel Kohlmeyer e5ac49d1de Merge branch 'master' into collected-small-bugfixes 2017-01-09 17:13:46 -05:00
Steve Plimpton c31f1e9f22 add fix mscg command, example, lib 2017-01-09 13:36:40 -07:00
Stan Moore ebd25cc078 Updating docs for Kokkos package 2017-01-09 12:40:33 -07:00
Stefan Paquay 20f8a8c219 Merge branch 'master' into github-tutorial-update 2017-01-09 14:38:09 +01:00
Axel Kohlmeyer 51e52b477a remove obsolete warning about fix rigid image flag restrictions 2017-01-06 21:30:33 -05:00
Axel Kohlmeyer 20a4e365b7 reduce warning when processing manual with sphinx 2017-01-06 21:30:13 -05:00
Steve Plimpton 51fa33a407 patch 6Jan17 2017-01-06 11:14:48 -07:00
Stefan Paquay ccd09e3967 Updated images of succesful merge. 2017-01-06 19:04:26 +01:00
Steve Plimpton 142770cb2a enable pppm/tip4p to work with triclinic 2017-01-06 10:38:32 -07:00
sjplimp 3ac58452de Merge pull request #310 from EfremBraun/master 
Fix nvk implemented
 2017-01-06 10:02:22 -07:00
sjplimp 9b348d567b Merge pull request #315 from Pakketeretet2/github-tutorial-update 
GitHub tutorial update
 2017-01-06 10:01:57 -07:00
sjplimp 41a6a3076e Merge pull request #309 from giacomofiorin/colvars-2016-12-22 
Update Colvars library to version 2016-12-22
 2017-01-06 09:58:20 -07:00
Axel Kohlmeyer 6af56e686d polish the introduction, some more clarifications, corrections and formatting improvements 2017-01-06 08:31:02 -05:00
Stefan Paquay eb1c6a225c typo fixed 2017-01-06 11:54:30 +01:00
Stefan Paquay 4d0a6d83bd Merged Axel's suggestions and updated text 2017-01-06 11:51:42 +01:00
Stefan Paquay 958722573f Merge branch 'github-tutorial-update' of https://github.com/Pakketeretet2/lammps into github-tutorial-update 2017-01-06 11:44:16 +01:00
Stefan Paquay 9d46670972 Updated text and images on reverse pull requests 2017-01-06 11:44:14 +01:00
Stefan Paquay 1a9f2df3d0 Updated text and images on reverse pull requests 2017-01-06 11:44:00 +01:00
Axel Kohlmeyer fe14158c10 some formatting updates and text rewrites in the "do not use git add -a" section 2017-01-04 13:13:56 -05:00
Stefan Paquay 0bcbcca140 Highlighted the assignee, maintainer changes, and mentioned LAMMPS collaborator 2017-01-04 17:28:22 +01:00
Stefan Paquay 933b288ce9 Added explaination for assignee, changes pushed by others and collaborator. 2017-01-04 14:31:23 +01:00
Richard Berger 4f45d39ac7 Add warning formatting 
Any paragraph starting with IMPORTANT NOTE: is transformed into a warning.
 2017-01-03 02:34:11 +01:00
Axel Kohlmeyer 7d057d4c83 make it more explicit, that master needs to be updated and feature branches should be created from master 2017-01-02 13:02:48 -05:00
Stefan Paquay 4f096dbad5 Updated some inconsistent text. 2017-01-02 18:53:28 +01:00
Stefan Paquay 18b12efc9f Small changes to tutorial text. 2017-01-02 18:25:36 +01:00
Stefan Paquay 2c7fea1e0d Second update round to text and images, a third will follow after succesful merge. 2017-01-02 18:15:08 +01:00
Stefan Paquay 4d98bbdfa5 Almost done with the tutorial now 2017-01-02 18:08:14 +01:00
Stefan Paquay 391ab761a4 Finally updated the github tutorial. 2017-01-02 17:55:02 +01:00
Efrem Braun aa146e9b38 Moved fix_nvk to USER-MISC, updated documentation to reflect move 2016-12-28 19:06:35 +01:00
Efrem Braun 68814d4fc8 Made documentation changes to fix nvk 2016-12-28 16:26:05 +01:00
Efrem Braun 616ca1de03 Fix nvk implemented. 2016-12-28 16:17:07 +01:00
Giacomo Fiorin 925f42727f Fix typo 2016-12-27 14:26:43 -05:00
Giacomo Fiorin f553e230db Update Colvars library to version 2016-12-22 
Significant code cleanup and several fixes (walls + extended Lagrangian)

New harmonicWalls bias to apply confining boundaries with time-dependent force
constant & integration
 2016-12-27 13:17:34 -05:00
Tim Mattox 781daad2a0 USER-DPD: update documentation for changes in commit 3faa57 2016-12-22 17:31:17 -05:00
Steve Plimpton 62dea1bb63 21Dec16 patch 2016-12-21 09:53:32 -07:00
Steve Plimpton 81a2db8a0c 17Dec16 patch 2016-12-16 11:36:54 -07:00
Steve Plimpton 3027ac9250 patch 16Dec16 2016-12-16 10:30:57 -07:00
Steve Plimpton e364b80724 added length keyword to python command 2016-12-16 10:24:25 -07:00
Steve Plimpton f509f133af patch 13Dec16: neighbor refactor, Stan pppm/disp bug fix, M Brown INTEL package updates 2016-12-13 17:14:28 -07:00
sjplimp f3b355bcbe Merge pull request #298 from akohlmey/collected-small-fixes 
Collected small fixes
 2016-12-13 16:23:23 -07:00
Steve Plimpton ae5764beac added functionity to lib interface 2016-12-13 16:22:17 -07:00
Axel Kohlmeyer ddf678da51 make fix gcmc command overview consistent 
this closes #296
 2016-12-09 14:30:27 -05:00
Efrem Braun d3d5ac17bf Fixed small typos in doc 2016-12-07 19:37:51 -08:00
Steve Plimpton fb3f597f41 30Nov16 patch 2016-11-30 14:04:41 -07:00
sjplimp d14814ae2e Merge pull request #289 from akohlmey/collected-updates-and-bugfixes 
Collected updates and bugfixes
 2016-11-30 14:02:41 -07:00
Steve Plimpton beb5a30f67 new compute global/atom command, also bug fix for descending dump sorts 2016-11-30 14:01:27 -07:00
Axel Kohlmeyer 42d430168b fix typo in compute cluster/atom docs 
this closes #292
 2016-11-29 07:24:09 -05:00
Axel Kohlmeyer 02ae2d218a correct broken link to USER-SMD docs PDF 2016-11-28 11:34:22 -05:00
Axel Kohlmeyer 87781771ba fix typo and USER-OMP support omission 2016-11-23 09:02:32 -05:00
Steve Plimpton 59d100ab57 final prep for 22Nov patch 2016-11-22 09:23:02 -07:00
sjplimp b6f2f0e6e9 Merge pull request #287 from rbberger/pylammps/docs 
Created PyLammps documentation
 2016-11-22 08:50:29 -07:00
sjplimp ff0441ac16 Merge pull request #286 from akohlmey/small-fixes-and-updates 
Collected small fixes and updates
 2016-11-22 08:49:46 -07:00
sjplimp 41907d3110 Merge pull request #285 from akohlmey/fix-ipi-update 
update for fix ipi from michele ceriotti
 2016-11-22 08:48:27 -07:00
Steve Plimpton b95f255af4 small changes to temper/grem commands 2016-11-22 08:47:44 -07:00
Michele Ceriotti 87a5a35bad A tiny bugfix for the reset flag, and a brief explanation of the changes 2016-11-20 00:44:23 +01:00
Axel Kohlmeyer 230b29eae6 correct accelerator flags for dpd styles in pair style overview 2016-11-19 11:47:12 -05:00
Richard Berger 2383c31f15 Created PyLammps documentation 
Based on material presented during MD Workshop at Temple University in
August 2016.
 2016-11-18 23:58:57 -07:00
Axel Kohlmeyer d787afcca9 also remove generated html files with 'make clean' in docs folder 2016-11-18 15:37:49 -05:00
Axel Kohlmeyer 176cde8ed3 minor cleanups 2016-11-18 15:36:38 -05:00
Axel Kohlmeyer 2862c20815 Merge branch 'master' into grem-feature 2016-11-18 14:51:46 -05:00
Axel Kohlmeyer 78e018829f Merge branch 'grem-feature' of https://github.com/dstelter92/lammps into grem-feature 2016-11-18 14:48:47 -05:00
Steve Plimpton 4b51719e67 new 17Nov16 patch and stable 2016-11-17 16:51:35 -07:00
Steve Plimpton 25d7be5f3d compute pressure doc change 2016-11-17 16:11:30 -07:00
sjplimp 74c0e4dd5c Merge pull request #278 from akohlmey/pair-agni 
Implementation of the AGNI manybody potential
 2016-11-17 09:04:31 -07:00
sjplimp 073e8a0524 Merge pull request #276 from akohlmey/doc-updates 
Small bugfixes and updates
 2016-11-17 09:02:27 -07:00
sjplimp 2535e44991 Merge pull request #271 from akohlmey/tersoff-modc 
pair style tersoff/mod/c
 2016-11-17 09:00:52 -07:00
dstelter92 747c95c525 revised documentation, added temper_grem ref to fix_grem 2016-11-17 11:00:49 -05:00
Steve Plimpton 8756a1017d Kokkos updates by Stan 2016-11-17 08:58:22 -07:00
dstelter92 5c64934bc8 added documention, re-ran temper_grem example 2016-11-17 10:40:10 -05:00
Axel Kohlmeyer b45d1e37ef integrate fix grem docs and update to match current conventions 2016-11-16 16:46:00 -05:00
dstelter92 16c8a307e5 removed leftover tex files 2016-11-16 15:39:02 -05:00
dstelter92 94f14ab051 spell check, minor typos 2016-11-16 15:34:32 -05:00
dstelter92 4641c9e568 Added basic documentation for grem fix 2016-11-16 13:36:13 -05:00
Axel Kohlmeyer 57124b9b25 update documentation metadata files for recent changes 2016-11-12 09:18:21 -05:00
Axel Kohlmeyer 03b3834fe3 add documentation for pair style agni 2016-11-12 09:07:42 -05:00
Axel Kohlmeyer 1f38e1a771 Merge branch 'master' into doc-updates 2016-11-09 18:18:05 -05:00
Steve Plimpton 9806da69f3 Stan bug fixes for fix reaxc/bonds/kk 2016-11-09 15:47:50 -07:00
Axel Kohlmeyer c55fd502e0 correct typo in formula 2016-11-09 15:04:24 -05:00
Axel Kohlmeyer 71ee2ecaa1 integrate pair style tersoff/mod/c contributed by Ganga P Purja Pun (GMU) 
This includes docs, added testing and inclusion of USER-OMP support.
 2016-11-09 14:52:39 -05:00
sjplimp bfea3dce7d Merge pull request #268 from arielzn/born_dsf 
pair styles born/coul/dsf and born/coul/dsf/cs added
 2016-11-09 11:57:09 -07:00
Steve Plimpton 2c801320c2 fixed links in Section_intro.txt 2016-11-09 11:46:10 -07:00
Steve Plimpton a23b287a7a sync with SVN for creation of stable release 2016-11-08 09:05:50 -07:00
Steve Plimpton 31204aab6a sync with SVN 2016-11-08 08:57:51 -07:00
arielzn 25e7d074cf documentation added for born/coul/dsf and born/coul/dsf/cs styles 2016-11-08 16:51:54 +01:00
Axel Kohlmeyer 3a3d96b877 info styles also prints out pair styles 2016-11-04 18:18:40 -04:00
sjplimp 77bbf03f0f Merge pull request #252 from akohlmey/preinstalled-vs-scm 
remove the misleading "(which it is by default)" from several doc files
 2016-11-04 10:59:06 -06:00
sjplimp f0131393e0 Merge pull request #248 from akohlmey/collected-small-fixes 
collected small bugfixes and updates
 2016-11-04 10:58:42 -06:00
Steve Plimpton f48b71f46b added examples/threebody, fix reaxc/speceies/kk 2016-11-04 10:56:04 -06:00
Axel Kohlmeyer 6cc4eb19af remove the misleading "(which it is by default)" from several doc files 2016-11-04 12:20:17 -04:00
Axel Kohlmeyer 7fdd6e2807 remove work repetitions for 'the' 2016-11-01 11:40:07 -04:00
Axel Kohlmeyer 2e0d304c7e remove word repetitions for 'a' 2016-11-01 11:36:11 -04:00
Steve Plimpton d9891abdf4 new library functions 2016-10-27 09:34:04 -06:00
sjplimp ad5f7c4581 Merge pull request #238 from giacomofiorin/colvars-2016-10-24 
Colvars fixes and small changes
 2016-10-25 10:32:41 -06:00
Axel Kohlmeyer 63eada2425 fix issue with docs for orientorder/atom compute reported by @andeplane 
this closes #243
 2016-10-25 12:12:48 -04:00
Steve Plimpton 9c81ad1ab6 doc page changes 2016-10-25 09:45:55 -06:00
Axel Kohlmeyer f8367e3d0f update documentation pdf for updated colvars lib 2016-10-24 17:49:53 -04:00
Axel Kohlmeyer 607246f923 ignore mobi file as well 2016-10-21 13:25:53 -04:00
Axel Kohlmeyer 6742fb634a remove mobi file format creation from makefile and explain it in README instead 2016-10-21 12:05:21 -04:00
Axel Kohlmeyer ed3f02f249 ignore generated PDF and ePUB files 2016-10-21 12:04:48 -04:00
Axel Kohlmeyer 2cf77ff778 Add support for ebook generation in ePUB and mobi format 2016-10-20 16:16:17 -04:00
Axel Kohlmeyer 8c3f5cb307 support generation of manual in ePUB format 2016-10-20 09:27:26 -04:00
Steve Plimpton 9954d5d346 forgot pair table change 2016-10-19 10:47:07 -06:00
sjplimp b0cf1ded38 Merge pull request #229 from akohlmey/small-corrections 
collected various small corrections and updates
 2016-10-19 08:57:54 -06:00
sjplimp 393337e7cf Merge pull request #226 from akohlmey/pair-gauss-mixing 
add mixing support for pair styles gauss and gauss/cut
 2016-10-19 08:37:32 -06:00
Axel Kohlmeyer 566effc9c9 account for new fix halt properly in PDF and online docs 2016-10-19 09:08:20 -04:00
Axel Kohlmeyer 7b7cb297e6 add mixing for pair styles gauss and gauss/cut contributed by andrew jewett. also add support for write_data. 2016-10-18 22:26:47 -04:00
Axel Kohlmeyer 5a6dea7a22 Merge branch 'master' into user-nc-dump 2016-10-18 15:36:18 -04:00
Steve Plimpton 2106dce2b3 new fix halt command, other sundry small bug fixes 2016-10-18 13:11:40 -06:00
Axel Kohlmeyer e4ff8128f1 fix typo 
(cherry picked from commit c65fb0e311)
 2016-10-16 12:29:53 -04:00
sjplimp d11363c7eb Merge pull request #220 from rbberger/fix-doc-makefile 
Allow building non-html doc targets without Python3 and virtualenv
 2016-10-13 17:00:23 -06:00
Steve Plimpton 2c8a7a318a bug fix for fix GCMC w/ fix shake, enhance of fix wall/gran/region with restarting 2016-10-13 16:55:53 -06:00
Richard Berger 95cca1bd9f Allow building other targets without Python3 and virtualenv 2016-10-13 11:40:44 -04:00
Steve Plimpton 63e71cd45b patch to add DPD-VV 2016-10-12 07:35:47 -06:00
Axel Kohlmeyer 39a22039e9 correct broken link 2016-10-11 23:57:40 -04:00
Axel Kohlmeyer e10ea91c5f add doc file to toctree 2016-10-11 23:51:42 -04:00
Axel Kohlmeyer b75860048b updates for recent changes to the manual 2016-10-11 23:50:45 -04:00
Axel Kohlmeyer 69cb831705 import dump nc and dump nc/mpiio from lammps-netcdf as USER-NC-DUMP package by lars pastewka 2016-10-11 23:44:34 -04:00
Steve Plimpton 0eb7fbf34d tweaks to new USER-DPD docs 2016-10-11 15:43:59 -06:00
sjplimp 6f1162927a Merge pull request #207 from timattox/USER-DPD_new_VV_for_DPD 
USER-DPD: add support for using VV with DPD
 2016-10-11 13:39:25 -06:00
Steve Plimpton 04f5eadcf1 added LAST option to dump_modify thresh, more restart info printed out to screen 2016-10-11 12:39:52 -06:00
sjplimp e70d530c46 Merge pull request #203 from rbberger/txt2rst-external-link-fix 
txt2rst external link fix
 2016-10-10 13:59:27 -06:00
Axel Kohlmeyer 144e6a8091 whitespace cleanup 2016-10-10 09:40:09 -04:00
Steven Strong 72ac073412 edited documentation 
(cherry picked from commit eff14c74b0)
 2016-10-10 09:38:54 -04:00
Steven Strong 49c45ab03b edited documentation 
(cherry picked from commit fd560889c3)
 2016-10-10 09:38:53 -04:00
Steven Strong c2cd439944 first draft of documentation for respa 
(cherry picked from commit d7dcbcfbd9)
 2016-10-10 09:38:53 -04:00
Tim Mattox e27ed6c94a USER-DPD: Added support to use VV integrator with USER-DPD if desired. 
Includes documentation and examples.
NOTE: VV requires very small timesteps under isoenergetic conditions.
Consider using fix_shardlow instead, since this VV support is
primarily for comparison purposes.
 2016-10-07 15:03:30 -04:00
Richard Berger 7f3a7c5cbe Fix broken link 2016-10-06 20:33:24 -04:00
Richard Berger e78b4267b7 Fix issue with external links containing anchors 2016-10-06 20:29:07 -04:00
sjplimp e9fed80928 Merge pull request #202 from akohlmey/doc-formatting-fixes 
collected documentation updates and corrections from LAMMPS-ICMS
 2016-10-06 15:49:44 -06:00
Steve Plimpton b3d2fb91bb new fix wall/gran/region command, REBO bug fix, new example log files 2016-10-06 15:47:41 -06:00
Axel Kohlmeyer 0b5d71537a collected documentation updates and corrections from LAMMPS-ICMS 
fixes formatting issues due to tabs, permission issues and
a few typos and badly worded text.
 2016-10-06 15:48:18 -04:00
Steve Plimpton 493873fb93 clean up doc src 2016-10-06 13:00:46 -06:00
Steve Plimpton c46be7db62 changes to imbalance weight factors 2016-10-05 10:33:39 -06:00
Steve Plimpton 11c2892e54 Merge branch 'restrict-weights-and-weight-factors' of https://github.com/akohlmey/lammps 2016-10-04 09:49:09 -06:00
sjplimp e079362776 Merge pull request #190 from akohlmey/small-bufixes-and-enhancements 
Small bufixes and enhancements
 2016-10-03 17:58:36 -06:00
Steve Plimpton c3ff8812b3 added XOR operator to variable command 2016-10-03 17:57:33 -06:00
Axel Kohlmeyer 1985db4fb1 correct designation of meam supporting USER-OMP and meam/spline not 2016-10-01 23:05:05 -04:00
Axel Kohlmeyer d45e333f7c restrict choice of weight factors and guarantee that weights are >= 0.001 2016-09-30 11:11:32 -04:00
Axel Kohlmeyer 6d200061ca update colvars library to version 2016-09-30 2016-09-30 08:15:44 -04:00
Steve Plimpton 446e7e7369 patch for allowing prd command to work with sorted atoms 2016-09-28 16:33:30 -06:00
sjplimp 829d11e88b Merge pull request #44 from rbberger/doc-fixes 
Some documentation fixes and IPython updates
 2016-09-27 15:36:10 -06:00
sjplimp 96f31d6dad Merge pull request #43 from akohlmey/doc-fixes 
Documentation fixes
 2016-09-27 15:35:41 -06:00
Steve Plimpton 35705217f4 enable multi-processor NEB replicas 2016-09-27 15:34:08 -06:00
Steve Plimpton 9a2f738673 sync with SVN 2016-09-27 15:32:57 -06:00
Steve Plimpton f9677e6d7b released version of weighted balancing 2016-09-27 10:52:27 -06:00
Richard Berger a3277117e2 Add filter which merges preformatted sections 2016-09-26 18:52:43 -04:00
Richard Berger 67d4c07689 Do not escape underscore inside preformat blocks 2016-09-26 18:52:31 -04:00
Richard Berger 877a504933 Fix typo in Section_howto.txt 2016-09-26 18:44:25 -04:00
Axel Kohlmeyer 8a951f9d79 fix typo 2016-09-26 18:43:03 -04:00
Axel Kohlmeyer 69a8842ecb update load balance weights documentation for fix balance and balance 2016-09-26 18:33:50 -04:00
Axel Kohlmeyer 7732548b3c correct issues related to the addition of fix cmap 2016-09-26 18:14:32 -04:00
Axel Kohlmeyer 2c5f6e1a99 fix a broken link that slipped through the cracks in the previous cleanup 2016-09-26 18:13:18 -04:00
Richard Berger d0aa13b543 Fix broken link in Section_packages.txt 2016-09-26 16:53:18 -04:00
Axel Kohlmeyer 47b52ed2dd Merge branch 'integration' into balance2 2016-09-26 15:19:48 -04:00
Steve Plimpton b97b9dd661 new fix cmap command 2016-09-26 08:40:53 -06:00
sjplimp c00cd6192d Merge pull request #41 from akohlmey/doc-fixes 
Documentation updates and corrections
 2016-09-23 14:57:23 -06:00
Steve Plimpton 6f4b7268de sync with SVN 2016-09-23 14:52:45 -06:00
Steve Plimpton 08f0bf9025 new verion of balance weighting 2016-09-23 14:37:53 -06:00
Axel Kohlmeyer 3d5f5bf40e a few more consolidations of link anchors 2016-09-23 10:25:10 -04:00
Axel Kohlmeyer 065d35eefa update kokkos compilation instructions to use provided preset makefiles 2016-09-22 23:53:19 -04:00
Axel Kohlmeyer 3785249033 use "make mpi" instead of "make g++" in examples 2016-09-22 23:52:52 -04:00
Axel Kohlmeyer e18941e865 delete bogus line (how did this get into the docs?) 2016-09-22 23:41:53 -04:00
Axel Kohlmeyer c6cebe66c7 making more links and anchors consistent and correct errors 2016-09-22 22:26:17 -04:00
Axel Kohlmeyer 08d9792ec8 add an additional explanation to compute XXX/tally docs and fix a typo 2016-09-22 21:46:45 -04:00
Axel Kohlmeyer c10aa55fc1 Merge branch 'integration' into doc-fixes 2016-09-22 09:19:45 -04:00
Steve Plimpton b3217218d6 doc page sync with SVN 2016-09-21 20:54:20 -06:00
Axel Kohlmeyer 2943dd5c12 correct another broken link in fix ti/spring 2016-09-20 19:02:13 -04:00
Axel Kohlmeyer 33d9a55d35 remove references to docs for fix ti/rs 2016-09-20 19:01:58 -04:00
Axel Kohlmeyer 5345efb5b8 correct broken link in updated fix ti/spring docs 2016-09-20 18:57:01 -04:00
Axel Kohlmeyer 9bedb8a1c9 ignore generated files in html folder 2016-09-20 18:54:51 -04:00
Axel Kohlmeyer 0d7e4f1e88 update docs for pair style gauss/cut to document optional per pair cutoff 2016-09-20 18:51:50 -04:00
Steve Plimpton 9ef748bbaa remvoing doc/html 2016-09-20 16:46:59 -06:00
Steve Plimpton 5c37fccf49 fix ti/spring for eam/allow and eam/fs 2016-09-20 12:10:58 -06:00
Steve Plimpton b9b044e180 new fix ti/spring command, remove fix ti/rs 2016-09-20 10:44:12 -06:00
Axel Kohlmeyer aa9fe38c5c consolidate ignoring python bytecompiled cache files 2016-09-17 09:50:49 -04:00
Steve Plimpton abf05eed61 comm tiled bug fix 2016-09-16 10:31:52 -06:00
Steve Plimpton 2f298951cf resolved conflicts 2016-09-14 10:22:46 -06:00
Steve Plimpton 717e719b83 HTML update 2016-09-14 09:35:03 -06:00
Steve Plimpton 10b4411d5b Merge branch 'integration' of github.com:akohlmey/lammps into integration 2016-09-13 17:22:14 -06:00
Steve Plimpton c744b23c4c doc updates 2016-09-13 17:15:15 -06:00
sjplimp a69e059be3 Merge pull request #27 from akohlmey/small-bugfixes 
Collected small changes and bugfixes
 2016-09-13 17:11:23 -06:00
sjplimp dbc548dd88 Merge pull request #26 from rbberger/is_available_feature 
Extend is_available() function to query optional features
 2016-09-13 17:10:10 -06:00
Steve Plimpton 25e518a4f4 added options to compute bond/local 2016-09-13 17:03:37 -06:00
Steve Plimpton ed52f9ea5e pair vashishta/table 2016-09-13 14:54:12 -06:00
Steve Plimpton 944289b018 final version of pair vashishta/table 2016-09-13 14:45:53 -06:00
Axel Kohlmeyer 51e4a568c9 Merge branch 'small-bugfixes' of github.com:akohlmey/lammps into small-bugfixes 2016-09-13 14:32:27 -04:00
Steve Plimpton a8081d4507 fix qeq Kokkos bug fix by Stan 2016-09-13 10:54:04 -06:00
Axel Kohlmeyer e53862ca4a update html file updated boundary.txt file 2016-09-11 14:55:13 -04:00
Axel Kohlmeyer a64eb330e3 document how using shrink-wrap boundaries can cause lost atoms in parallel 2016-09-11 14:48:37 -04:00
Axel Kohlmeyer d70e051ecd update docs for lj/sf/dipole/sf 2016-09-09 10:00:15 -04:00
Richard Berger e27869daf6 Add updated HTML documentation about new is_available feature category 2016-09-09 05:56:24 -04:00
Richard Berger dc0c0ab214 Add documentation about new is_available feature category 2016-09-09 05:55:28 -04:00
Axel Kohlmeyer 956af8cebb update html file 2016-09-08 17:41:46 -04:00
Axel Kohlmeyer 71eed1d612 update documentation for vashishta pair style 2016-09-08 17:20:52 -04:00
Axel Kohlmeyer fe581e8ced Merge remote-tracking branch 'lammps-rw/integration' into vashishta-tabulation 2016-09-08 16:21:05 -04:00
sjplimp b866e0663b Merge pull request #24 from rbberger/info_command_styles 
Info command extensions
 2016-09-08 14:16:41 -06:00
sjplimp 5d0da95a0b Merge pull request #23 from akohlmey/doc-corrections-and-updates 
Doc corrections and updates
 2016-09-08 14:15:56 -06:00
Richard Berger 1f901c9b2d Update generated HTML docs of info command 2016-09-08 09:53:57 -04:00
Richard Berger 79b8f6320d Update docs of info command 2016-09-08 09:53:14 -04:00
Steve Plimpton 43b05a60c7 created vashishta/table variant 2016-09-07 11:56:38 -06:00
Axel Kohlmeyer 0fe7d1d361 correct internal links for Modify LAMMPS section 2016-09-07 10:13:34 -04:00
Axel Kohlmeyer 346ff42498 correct reference in modify section 2016-09-07 10:10:12 -04:00
Axel Kohlmeyer 5feedbd829 regenerate html pages with new txt2rst tool 2016-09-07 10:09:53 -04:00
Axel Kohlmeyer 44ce6fac4b replace backquote with regular quote and `` + '' with double quote. 2016-09-07 08:29:16 -04:00
Axel Kohlmeyer 70d6718aa3 Update discussion on parallel python packages. There seem to be only two left. 2016-09-07 07:42:06 -04:00
Axel Kohlmeyer 348b677148 Make formatting and links more consistent and unique 2016-09-07 07:41:17 -04:00
Richard Berger 4c783ea3b7 Enforce l,ule or l,ole command order for RST 
(cherry picked from commit 79e867c213)
 2016-09-07 02:16:55 -04:00
Richard Berger 9e8256aeb0 Refactored code and escape RST special character '_' 
(cherry picked from commit 4629a464f7)
 2016-09-07 02:16:55 -04:00
Richard Berger 925f1bfb6f Escape RST special character '^' and take care of special math cases 
(cherry picked from commit 453521c8e6)
 2016-09-07 02:16:55 -04:00
Richard Berger 3f312244a0 Escape RST special character '*' in final output 
(cherry picked from commit 7cb39811d4)
 2016-09-07 02:16:54 -04:00
Axel Kohlmeyer 55022d1263 replace :l,ule and :l,ole with :l :ule or :l :ole 2016-09-07 02:11:59 -04:00
Axel Kohlmeyer 0d491d483c avoid Inline substitution_reference start-string without end-string 2016-09-07 02:10:49 -04:00
Axel Kohlmeyer a31c507370 correct error message text, sync with source 2016-09-06 22:15:49 -04:00
Axel Kohlmeyer 16607a0132 update colvars library to version 2016-08-19 
(cherry picked from commit c67326be6d)
 2016-09-06 21:27:46 -04:00
Axel Kohlmeyer ec2a6b9f0d update colvars to version 2016-08-10 
(cherry picked from commit f2ddf828e4)
 2016-09-06 21:27:41 -04:00
Axel Kohlmeyer fc2d878305 update manual introduction to represent current status. correct some markup to better pass through sphinx 2016-09-06 21:20:47 -04:00
Axel Kohlmeyer 1c17b98500 Merge branch 'integration' into doc-corrections-and-updates 2016-09-06 20:19:02 -04:00
Axel Kohlmeyer ace5dc3c7c Merge remote-tracking branch 'lammps-rw/clean-up-docs-for-sphinx' into clean-up-docs-for-sphinx 2016-09-06 19:54:35 -04:00
Steve Plimpton 0252347d43 sync with 7Sep16 patch 2016-09-06 17:00:32 -06:00
sjplimp c9455c90de Merge pull request #20 from akohlmey/lammps-contribute 
Update description of submitting contributions to LAMMPS
 2016-09-06 16:55:16 -06:00
Axel Kohlmeyer 42db93e198 one more small correction to document recent fix ave/time changes 2016-09-06 16:10:16 -04:00
Axel Kohlmeyer 906bd24543 fix typos 2016-09-06 16:03:16 -04:00
Axel Kohlmeyer 4f88c75401 update the discussion on how to submit modifications 2016-09-06 16:02:59 -04:00
Axel Kohlmeyer 1a7b04e8a6 generate updated html files for corrected .txt files 
(cherry picked from commit 7de57ffd94)
 2016-09-06 13:40:11 -04:00
Axel Kohlmeyer fbc955e549 correct link targets 
(cherry picked from commit ff75cf51bb)
 2016-09-06 13:40:11 -04:00
Steve Plimpton 3bb3c1a45c add pppm/kk and fix reax/c issues 2016-09-06 10:46:51 -06:00
Axel Kohlmeyer b12ad2cecf Merge branch 'integration' into vashishta-tabulation 2016-09-01 08:25:31 -04:00
Axel Kohlmeyer 431d1a6dae mention stable releases 2016-09-01 02:37:55 -04:00
Axel Kohlmeyer ab84acc2cd synchronize LAMMPS developer list with webpage and move ray to "past" 2016-09-01 02:26:49 -04:00
Axel Kohlmeyer fc093a0aab replace :ule,l and :ole,l with :l<br>:ule and :l<br>:ole 2016-09-01 02:07:16 -04:00
Axel Kohlmeyer 5e6dff36e4 add new commands to lammps.book 2016-09-01 02:01:47 -04:00
Axel Kohlmeyer 7de57ffd94 generate updated html files for corrected .txt files 2016-09-01 00:02:40 -04:00
Axel Kohlmeyer ff75cf51bb correct link targets 2016-09-01 00:01:26 -04:00
sjplimp fb2c18ee88 Merge pull request #17 from akohlmey/small-doc-fixes 
corrections for various compute something/chunk examples
 2016-08-31 19:57:36 -06:00
Steve Plimpton de0036fafd removing searchindex.js 2016-08-31 19:52:28 -06:00
Axel Kohlmeyer c3c9788dc7 include autogenerated html code 2016-08-31 21:49:06 -04:00
Axel Kohlmeyer 2abd5ad28a Merge branch 'integration' into small-doc-fixes 2016-08-31 21:42:22 -04:00
Steve Plimpton de21cb2cd5 small changes to doc page 2016-08-31 16:16:43 -06:00
Steve Plimpton 639ab0fd3e Merge branch 'core/cpp_exceptions' of https://github.com/rbberger/lammps into error 2016-08-31 16:11:08 -06:00
Steve Plimpton 6c65af710c bad file? 2016-08-31 16:10:20 -06:00
Axel Kohlmeyer 29e480ad66 corrections for various compute something/chunk examples 2016-08-31 17:31:14 -04:00
Steve Plimpton 7c01ef57ee sync with SVN 2016-08-31 15:17:00 -06:00
sjplimp f89448d73c Merge pull request #6 from akohlmey/manifold-doc-update 
Small update for USER-MANIFOLD docs.
 2016-08-31 14:53:16 -06:00
Steve Plimpton ad879d97db sync w/ SVN 2016-08-31 14:29:44 -06:00
Steve Plimpton 4051aedf2c Merge branch 'small' into integration 
Conflicts:
	src/compute_omega_chunk.cpp
 2016-08-31 13:58:12 -06:00
Steve Plimpton ec8b9e21db sync with SVN 2016-08-31 13:28:26 -06:00
Richard Berger 1986eda4d5 Remove no longer needed generated files in doc 
If we use the Google Custom Search API, we do not need to keep the
generated searchindex.js file anymore. We also can safely remove
the _sources directory for good.

Since these get generated during each Sphinx build, additional
steps have been added to the Makefile to get rid of them. They
are also added to .gitignore to avoid commiting them by accident.
 2016-08-31 00:36:56 -04:00
Richard Berger e71fafdd25 Use Google Custom Search API for searching in docs 2016-08-31 00:28:27 -04:00
Axel Kohlmeyer 56d0ab9474 updated doc build readme for current Fedora and RHEL/CentOS 2016-08-28 14:20:23 -04:00
Axel Kohlmeyer f8d6b979ec Merge branch 'integration' into small-bugfixes 2016-08-28 14:16:14 -04:00
Axel Kohlmeyer cdf06646ef Update documentation for tabulation in vashista pair style 2016-08-27 23:05:17 -04:00
Richard Berger f5a50c3cd1 Added documentation about -DLAMMPS_EXCEPTIONS flag 2016-08-27 22:13:36 -04:00
Steve Plimpton 3a1397dc7c sync with SVN 2016-08-27 17:11:16 -06:00
sjplimp 0c2e643062 Merge pull request #9 from rbberger/remove_sha1sum_dependency 
Remove sha1sum dependency for doc generation
 2016-08-27 17:02:17 -06:00
Steve Plimpton c80dad0028 new fix flow/gauss command 2016-08-27 16:25:01 -06:00
Axel Kohlmeyer 9be235d872 improved .gitignore files to show only changes in relevant folders and files 2016-08-26 14:34:42 -04:00
Steve Plimpton 2beecd1e73 removal of doc/html/_sources and minor sync with SVN 2016-08-26 11:34:37 -06:00
Richard Berger 95aabdf51a Add MacOS X instructions to doc generation README 2016-08-26 10:08:22 -04:00
Richard Berger ea368919f3 Remove sha1sum dependency for doc generation 
On MacOS X there is no sha1sum. So to simplify doc generation on those systems
use a Python script instead to generate a unique string from the repository
path.
 2016-08-26 00:01:34 -04:00
Stefan Paquay b8e7f53017 Small update for USER-MANIFOLD docs. 
(cherry picked from commit d188bdbd86)
 2016-08-24 23:36:04 -04:00
Axel Kohlmeyer ff541e9a84 fix typo in compute omega/chunk usage example 2016-08-24 23:04:27 -04:00
Steve Plimpton e27196e91c doc files 2016-08-23 16:28:36 -06:00
Steve Plimpton 270b07b035 Merge branch 'integration' into small-bugfixes 2016-08-23 15:35:31 -06:00
athomps 55fe1f6b29 fixed integer division problem in python code snippet 
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15486 f3b2605a-c512-4ea7-a41b-209d697bcdaa
 2016-08-22 22:35:23 +00:00
Axel Kohlmeyer c88e9b46cf thread timing summare needs to be marked as preformatted 
(cherry picked from commit b745636a67)
 2016-08-22 14:35:11 -04:00
sjplimp 2fff78a78e git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15484 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-08-20 22:43:04 +00:00
sjplimp ccf8cf20b3 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15482 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-08-20 22:42:17 +00:00
sjplimp b1829c107c git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15479 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-08-13 15:03:16 +00:00
sjplimp 832f6a9f11 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15475 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-08-13 14:52:15 +00:00
sjplimp c03252f08d git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15471 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-08-12 14:34:16 +00:00
sjplimp 112c98159b git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15469 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-08-12 13:49:50 +00:00
sjplimp b3364ae943 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15467 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-08-10 14:46:16 +00:00
sjplimp 563e069971 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15461 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-08-08 13:50:31 +00:00
sjplimp 17e8e9a9c9 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15460 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-08-08 13:48:22 +00:00
sjplimp 0029040f11 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15456 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-08-05 22:12:27 +00:00
sjplimp 30d6007565 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15454 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-08-05 20:45:14 +00:00
sjplimp 390b492d08 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15453 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-08-05 18:28:23 +00:00
sjplimp 9a3b988b2b git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15452 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-08-05 18:28:02 +00:00
athomps 36a0c644a9 Attempted to straighten out italics 
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15451 f3b2605a-c512-4ea7-a41b-209d697bcdaa
 2016-08-05 18:21:12 +00:00
sjplimp 96a73d51cd git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15450 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-08-05 18:16:10 +00:00
athomps 32c8c9d63e clarified energy contribution to minimization energy 
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15448 f3b2605a-c512-4ea7-a41b-209d697bcdaa
 2016-08-05 16:27:48 +00:00
sjplimp 7541033246 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15445 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-08-05 15:50:41 +00:00
sjplimp ce7581b869 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15442 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-08-05 15:38:38 +00:00
sjplimp 42cc69b843 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15441 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-08-05 15:17:36 +00:00
sjplimp e09caf843d git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15440 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-08-05 15:17:23 +00:00
sjplimp 82a29a8adb git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15439 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-08-05 15:14:30 +00:00
sjplimp 091fb71a93 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15438 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-08-05 15:14:06 +00:00
sjplimp 677da2ea52 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15432 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-08-03 19:40:39 +00:00
sjplimp a6ade15e60 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15427 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-08-03 16:29:25 +00:00
sjplimp 56502c7c09 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15423 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-08-01 22:57:27 +00:00
sjplimp 1cdd1fd4f8 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15420 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-08-01 22:43:21 +00:00
sjplimp 69513a29ab git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15419 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-08-01 22:40:49 +00:00
sjplimp 26622f2826 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15412 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-07-30 18:40:03 +00:00
sjplimp 7ec3c90b86 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15411 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-07-30 16:09:32 +00:00
sjplimp fd05571ee0 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15410 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-07-30 16:09:11 +00:00