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4614 Commits

Author SHA1 Message Date
Steve Plimpton c61f9248f4
Merge pull request #987 from sergeylishchuk/master 
Added Axilrod-Teller manybody potential
 2018-08-29 07:48:22 -06:00
Steven J. Plimpton 44bda245a6 resolution of cutoff issues 2018-08-24 09:36:39 -06:00
Axel Kohlmeyer a04008cdfd fully integrate atm pair style into manual 2018-08-23 10:27:40 -04:00
Axel Kohlmeyer 648d8c3d2a adapt docs to refactored manual 2018-08-23 10:15:17 -04:00
Axel Kohlmeyer c5d3274222 restore files 2018-08-23 10:13:06 -04:00
Axel Kohlmeyer 4f36f077ff whitespace cleanup 2018-08-23 10:08:36 -04:00
Axel Kohlmeyer 929185da07 Merge branch 'master' into axilrod-teller 
# Conflicts:
#	cmake/CMakeLists.txt
#	doc/src/Commands.txt
#	doc/src/Commands_bond.txt
#	doc/src/Howto.txt
#	doc/src/Howto_bioFF.txt
#	doc/src/Howto_coreshell.txt
#	doc/src/Howto_couple.txt
#	doc/src/Howto_diffusion.txt
#	doc/src/Howto_dispersion.txt
#	doc/src/Howto_granular.txt
#	doc/src/Howto_library.txt
#	doc/src/Howto_multiple.txt
#	doc/src/Howto_replica.txt
#	doc/src/Howto_restart.txt
#	doc/src/Howto_temperature.txt
#	doc/src/Howto_tip4p.txt
#	doc/src/Intro.txt
#	doc/src/Intro_authors.txt
#	doc/src/Intro_features.txt
#	doc/src/Intro_nonfeatures.txt
#	doc/src/Manual.txt
#	doc/src/Manual_version.txt
#	doc/src/Packages.txt
#	doc/src/Packages_details.txt
#	doc/src/Packages_standard.txt
#	doc/src/Packages_user.txt
#	doc/src/Section_start.txt
#	doc/src/Speed.txt
#	doc/src/Speed_compare.txt
#	doc/src/Speed_gpu.txt
#	doc/src/Speed_intel.txt
#	doc/src/Speed_kokkos.txt
#	doc/src/Speed_measure.txt
#	doc/src/Speed_omp.txt
#	doc/src/Speed_opt.txt
#	doc/src/Speed_packages.txt
#	doc/src/Speed_tips.txt
#	doc/src/fix_deform.txt
#	doc/src/fix_external.txt
#	doc/src/fix_property_atom.txt
#	doc/src/lammps.book
#	doc/src/neb.txt
#	doc/src/pair_eam.txt
#	doc/src/prd.txt
#	doc/src/run_style.txt
#	doc/src/temper.txt
#	src/version.h
 2018-08-23 10:06:47 -04:00
Axel Kohlmeyer 440338d769 last round of spelling fixes 2018-08-22 22:35:35 -04:00
Axel Kohlmeyer af35c3bcca atomID -> atom-ID 2018-08-22 22:28:53 -04:00
Axel Kohlmeyer c0d9d96e09 better help message in make file 2018-08-22 22:24:51 -04:00
Axel Kohlmeyer 0cd71ee582 more false positives 2018-08-22 22:18:35 -04:00
Axel Kohlmeyer b00046fd34 fix typo 2018-08-22 22:18:27 -04:00
Axel Kohlmeyer 4b2629d8ba recompile/recompute/reinit -> re-compile/re-compute/re-init 2018-08-22 22:18:16 -04:00
Axel Kohlmeyer 193f46dd9f spelling fix 2018-08-22 22:04:03 -04:00
Axel Kohlmeyer 96bde51ae4 autodetect -> auto-detect 2018-08-22 22:03:53 -04:00
Axel Kohlmeyer 683c87347c neighborlist -> neighbor list 2018-08-22 22:02:24 -04:00
Axel Kohlmeyer fe6debfe9a precompiled -> pre-compiled 2018-08-22 22:02:01 -04:00
Axel Kohlmeyer 9a8c09288f use Hyper-Threading consistently 2018-08-22 21:54:41 -04:00
Axel Kohlmeyer eca0487daf subdomain -> sub-domain 2018-08-22 21:50:56 -04:00
Axel Kohlmeyer 4278a284e4 fix one more broken link 2018-08-22 21:48:42 -04:00
Axel Kohlmeyer 5da714bcc8 fix another source of broken links inserted into processed files 2018-08-22 21:33:40 -04:00
Axel Kohlmeyer 2d6d635ce0 update list of false positives 2018-08-22 21:30:40 -04:00
Axel Kohlmeyer e632acec29 fix a bunch more spelling errors 2018-08-22 21:30:21 -04:00
Axel Kohlmeyer 1bd5626140 fix some more spelling issues 2018-08-22 20:43:35 -04:00
Axel Kohlmeyer ffb1a9c46a update link in lammps theme for sphinx 2018-08-22 20:36:01 -04:00
Axel Kohlmeyer 9e37ea16ac fix some speelink ehrrors 2018-08-22 20:35:35 -04:00
Axel Kohlmeyer c8ac88dd87 update link in LAMMPS theme for Sphinx 2018-08-22 19:46:49 -04:00
Axel Kohlmeyer 0e292b397f even more broken links detected by ePUB to MOBI conversion 2018-08-22 19:41:44 -04:00
Axel Kohlmeyer d5089858bd add support for the conversion of ePUB to MOBI (compatible with Kindle) 2018-08-22 19:17:21 -04:00
Axel Kohlmeyer 357ffef09c fix some more broken links detected by ebook conversion 2018-08-22 19:16:36 -04:00
Axel Kohlmeyer 2aa4770e0d correct link in AtC html docs 2018-08-22 19:16:11 -04:00
Axel Kohlmeyer 4074c4c67f correct some more broken or outdated links 2018-08-22 19:08:07 -04:00
Axel Kohlmeyer a1098d5796 fix broken and inconsistent links in the manual 2018-08-22 18:45:32 -04:00
Steven J. Plimpton b47e492233 patch 22Aug18 2018-08-22 08:45:41 -06:00
Steve Plimpton bb72604eec
Merge pull request #1071 from akohlmey/doc-updates-for-release 
Doc updates for release
 2018-08-22 08:37:44 -06:00
Steve Plimpton 316f265e3d
Merge pull request #1067 from jrgissing/bond/react-better-template-checks 
Bond/react: better template validity checks
 2018-08-22 08:36:44 -06:00
Richard Berger 9d4994b383 Add missing bullet points 2018-08-22 10:08:56 -04:00
Axel Kohlmeyer fc47b8c6dd some more tweaks and epxlanations for windows support 2018-08-22 09:51:29 -04:00
Axel Kohlmeyer c4bda59f9a make the statement, that the group id is ignored more visible 2018-08-22 09:41:29 -04:00
Axel Kohlmeyer 87afaa44fd add notes on compiling LAMMPS for windows 2018-08-22 09:41:12 -04:00
Axel Kohlmeyer 2b5618dc40
Updates for Speed_gpu.txt doc page 
This corrects some inaccurate statements about required hardware and briefly discusses some OpenCL related basics. also a typo is fixed
 2018-08-21 06:50:30 -04:00
jrgissing 95d462e5d3 bond/react: better template validity check 
now always throws error if a bond type changes, but both of of the involved atoms are too close to edge of template
 2018-08-21 02:28:53 -06:00
Richard Berger d66d696dff minor tweak 2018-08-20 22:45:57 -04:00
Steve Plimpton 2c19079707
Merge pull request #1062 from lammps/doc-reformat 
change format of Howto and Tools doc pages
 2018-08-20 15:36:53 -06:00
Steven J. Plimpton 937d4707dc proposed SJP changes for 2nd cutoff_triple 2018-08-20 15:03:21 -06:00
Steven J. Plimpton f8faf4dfe2 cosmetic tweak to Howto page 2018-08-20 13:50:55 -06:00
Steve Plimpton 044141eb8f
Merge pull request #1063 from akohlmey/small-doc-fixes 
Fix some documentation issues
 2018-08-20 13:39:59 -06:00
Steven J. Plimpton 0ca0e0a93c mis-spelled word 2018-08-20 13:36:44 -06:00
Steven J. Plimpton 639573ff87 more instructions on external lib downloads, and CMake versions 2018-08-20 13:10:26 -06:00
Richard Berger 703a795af8 Modify Howto and Tools 
- add missing TOCs in Howto section
- limit section numbering to maximum of 3 levels
- add "Tool descriptions" header
 2018-08-20 01:50:16 -04:00