Commit Graph

14552 Commits

Author SHA1 Message Date
Steve Plimpton e73663d1de
Merge pull request #847 from akohlmey/collected-small-changes
Collected small changes and bugfixes
2018-03-23 13:41:22 -06:00
Steve Plimpton 5770a59ead
Merge pull request #846 from akohlmey/pdf-manual-reorg
Refactor PDF Manual Structure
2018-03-23 13:40:35 -06:00
Steve Plimpton db5a6b272b
Merge pull request #842 from martok/meamc-bugfix
MEAM/C Improvements/fixes
2018-03-23 13:40:14 -06:00
Steve Plimpton 318877ada3
Merge pull request #839 from oywg11/master
New registry dependent interlayer potential in LAMMPS
2018-03-23 13:38:48 -06:00
Steven J. Plimpton d14c16a47c a few new lib interface methods 2018-03-23 13:34:22 -06:00
Axel Kohlmeyer 5a341bee09 minor cleanup in docs and updated log files for kolmogorov/crespi/full 2018-03-23 06:42:04 -04:00
oywg11 78e09e1854 refine the code and documentation 2018-03-23 13:26:40 +03:00
Axel Kohlmeyer c398eb6b57 update kolmogorov-crespi examples 2018-03-22 19:42:07 -04:00
Axel Kohlmeyer 8de7c449fc refactor code and examples to match LAMMPS conventions. whitespace cleanup. shorten examples. 2018-03-22 19:31:41 -04:00
Axel Kohlmeyer 04c968362f fix up and integrate documentation for contributed pair styles 2018-03-22 18:20:19 -04:00
Stan Moore a6d10ba91d Remove deprecated Kokkos code 2018-03-22 11:19:17 -06:00
Axel Kohlmeyer b2194d617b update logs for eff and reax 2018-03-21 21:26:46 -04:00
Axel Kohlmeyer 8bbefb6187 more meaningful output for electron units. fix bug in time unit to fs conversion 2018-03-21 20:12:14 -04:00
Axel Kohlmeyer 07a8e31623 update BOP input and log files 2018-03-21 19:45:52 -04:00
Axel Kohlmeyer 9f785a4f0b detect and error out on unsupported/old bop potential files 2018-03-21 19:40:25 -04:00
Axel Kohlmeyer a19f550c1e update the bop potential file and input 2018-03-21 19:40:03 -04:00
Axel Kohlmeyer a585871251 update logfiles 2018-03-21 19:04:06 -04:00
Axel Kohlmeyer ad87b632ef update spc/e data and reax/c input 2018-03-21 19:03:02 -04:00
Axel Kohlmeyer 57dbad59c0 update missing data files and adjust input files for potentials comparison 2018-03-21 16:03:21 -04:00
Axel Kohlmeyer 96061b854b Merge branch 'compute_chunk_atom_pbc' of https://github.com/poppik/lammps into collected-small-changes 2018-03-21 15:34:05 -04:00
Pavel V. Strashnov c58bc6fcba Fixed pbc wrapping in case of spherical bins 2018-03-21 21:20:15 +03:00
Axel Kohlmeyer e66c71e1ca fix linker error bug with fftw3 and -DFFT_SINGLE 2018-03-21 12:13:09 -04:00
Axel Kohlmeyer 1a402d4002 refactor headline levels to result in a more structured PDF manual 2018-03-20 15:42:13 -04:00
Axel Kohlmeyer 69ca8e5503 print a message about the restored atom style 2018-03-19 18:57:28 -04:00
Axel Kohlmeyer 5cdc6097f4 abort with an error when a pair style incorrectly advertises a restart ability 2018-03-19 18:25:18 -04:00
Axel Kohlmeyer 28a922b18b print error message when a pair style was not re-specified after reading a restart 2018-03-19 18:05:47 -04:00
Axel Kohlmeyer 16054cc327 print names of restored force field styles to screen and logfile 2018-03-19 18:04:08 -04:00
Axel Kohlmeyer 3c94f7d5d1 add pointer Force class to temporarily hold the name of the restarted pair style 2018-03-19 18:03:13 -04:00
Axel Kohlmeyer c2c49395bd write the name of a pair style to the restart even if it does not store data 2018-03-19 18:00:48 -04:00
Steven J. Plimpton f6c76e04b8 patch 16Mar18 2018-03-19 08:26:58 -06:00
Sebastian Hütter 545e40f107 MEAM/C: Remove unused function 2018-03-19 13:33:58 +01:00
Axel Kohlmeyer 8e5d3802ad avoid possible memory leak 2018-03-16 19:11:30 -04:00
Steve Plimpton 3befd4b603
Merge pull request #843 from akohlmey/whitespace-cleanup
Whitespace cleanup for stable release
2018-03-16 14:44:30 -06:00
Axel Kohlmeyer e9ac8ba01e cleanup embedded or trailing tabs 2018-03-16 13:21:54 -04:00
Sebastian Hütter a25e36abea Avoid more div by zero in meam/c 2018-03-16 17:45:57 +01:00
Axel Kohlmeyer 59dbb49cf9 remove trailing whitespace 2018-03-16 12:37:27 -04:00
Axel Kohlmeyer ee862d8bf5 replace leading tabs 2018-03-16 12:34:33 -04:00
Sebastian Hütter ac97c2156f Improve style, replace pow(x) with faster square() and cube() 2018-03-16 16:38:23 +01:00
Steve Plimpton fc3de22c17
Merge pull request #841 from stanmoore1/compiler_warnings
Fix compiler warnings
2018-03-16 09:26:59 -06:00
Steve Plimpton ab914a9220
Merge pull request #840 from akohlmey/collected-small-fixes
Collected small fixes for stable release
2018-03-16 09:25:59 -06:00
Steve Plimpton 7c300eebd5
Merge pull request #837 from akohlmey/reaxff-bugfix-from-scm
reaxff corrected bond order bugfix
2018-03-16 09:25:38 -06:00
Axel Kohlmeyer 94a923191a more whitespace cleanup 2018-03-15 22:02:02 -04:00
Axel Kohlmeyer 7d2ada9d80 whitespace cleanup 2018-03-15 21:57:45 -04:00
Stan Moore 15a9600569 Fix compiler warnings 2018-03-14 13:27:03 -06:00
Axel Kohlmeyer d62534665f correct potential out-of-bounds memory access 2018-03-14 12:11:58 -04:00
oywg11 6415befb5b Add more examples 2018-03-14 16:30:54 +02:00
Axel Kohlmeyer d00908ea3e whitespace cleanup 2018-03-13 23:02:55 -04:00
Axel Kohlmeyer 6965307250 print warning when "compress yes" is ignored with delete_atoms 2018-03-13 22:58:39 -04:00
oywg11 bbb2a6d641 Finally updated the github tutorial 2018-03-13 17:43:25 +02:00
oywg11 375cf6124f Finally updated the github tutorial 2018-03-13 17:27:23 +02:00