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10,709 Commits 9 Branches 198 Tags 1.1 GiB
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10709 Commits

Author SHA1 Message Date
Anders Hafreager 36e085e393 Fixed initialization of arrays in fixes 2016-08-28 22:23:22 -04:00
Anders Hafreager 425142ba2e Fixed initialization of arrays in fixes 2016-08-28 22:23:22 -04:00
Anders Hafreager 07eb1d443b Fixed initialization of arrays in fixes 2016-08-28 22:23:22 -04:00
Anders Hafreager 265cc14125 Fixed initialization of arrays in fixes 2016-08-28 22:23:22 -04:00
Anders Hafreager fd05a1325e Fixed initialization of arrays in fixes 2016-08-28 22:23:22 -04:00
Anders Hafreager b5a562788b Fixed initialization of arrays in fixes 2016-08-28 22:23:22 -04:00
Anders Hafreager 2c7241bfe2 Fixed initialization of arrays in fixes 2016-08-28 22:23:22 -04:00
Anders Hafreager ee2f6ded29 Fixed initialization of arrays in fixes 2016-08-28 22:23:22 -04:00
Anders Hafreager db077ef186 Fixed initialization of arrays in fixes 2016-08-28 22:23:22 -04:00
sjplimp 0192d2e359 Merge pull request #5 from akohlmey/initialize-pointers 
enforce initializing pointers in constructors to NULL
 2016-08-27 17:14:27 -06:00
Steve Plimpton 3a1397dc7c sync with SVN 2016-08-27 17:11:16 -06:00
sjplimp 0c2e643062 Merge pull request #9 from rbberger/remove_sha1sum_dependency 
Remove sha1sum dependency for doc generation
 2016-08-27 17:02:17 -06:00
sjplimp ef69bf8695 Merge pull request #11 from akohlmey/python3-for-make-py 
Python 3 support for Make.py with Python 2.7 compatibility
 2016-08-27 17:01:29 -06:00
sjplimp 6a4633af0a Merge pull request #12 from akohlmey/shell-script-paranoia 
Disable custom locale and grep options in shell scripts
 2016-08-27 16:59:43 -06:00
Steve Plimpton c80dad0028 new fix flow/gauss command 2016-08-27 16:25:01 -06:00
Axel Kohlmeyer c570bf26e0 enforce C or POSIX locale in all shell scripts and turn of enforced global grep options 2016-08-27 01:57:45 -04:00
Axel Kohlmeyer 742c853775 need to ignore src/Make.py.last as well 2016-08-26 17:48:59 -04:00
Axel Kohlmeyer 9932b73227 Merge branch 'integration' into python3-for-make-py 2016-08-26 17:48:06 -04:00
Axel Kohlmeyer 90272f6c71 some more tweaks needed to improve python2/3 compatibility 2016-08-26 17:46:57 -04:00
Axel Kohlmeyer 8dd42789f8 correct for futurize not being able to fully convert functionality of the commands module 2016-08-26 17:15:39 -04:00
Steve Plimpton a0592d1b64 Merge branch 'gitignore-improvements' into integration 2016-08-26 13:54:29 -06:00
Axel Kohlmeyer 9be235d872 improved .gitignore files to show only changes in relevant folders and files 2016-08-26 14:34:42 -04:00
Steve Plimpton 2beecd1e73 removal of doc/html/_sources and minor sync with SVN 2016-08-26 11:34:37 -06:00
Richard Berger 95aabdf51a Add MacOS X instructions to doc generation README 2016-08-26 10:08:22 -04:00
Richard Berger ea368919f3 Remove sha1sum dependency for doc generation 
On MacOS X there is no sha1sum. So to simplify doc generation on those systems
use a Python script instead to generate a unique string from the repository
path.
 2016-08-26 00:01:34 -04:00
Axel Kohlmeyer 74516b571e port Make.py so it is compatible with python 2.7 *and* python 3.x 2016-08-25 06:30:53 -04:00
Anders Hafreager 7d43f349e6 Fixed initialization of arrays in computes 2016-08-24 17:26:04 -04:00
Anders Hafreager 5e811f16e8 Fixed initialization of arrays in computes 2016-08-24 17:26:03 -04:00
Anders Hafreager fcd54f02e6 Fixed initialization of arrays in computes 2016-08-24 17:26:03 -04:00
Anders Hafreager 1f3ef8e0ee Fixed initialization of arrays in computes 2016-08-24 17:26:03 -04:00
Anders Hafreager 3e793d6eb7 Fixed initialization of arrays in computes 2016-08-24 17:26:03 -04:00
Anders Hafreager 95dde5c041 Fixed initialization of arrays in computes 2016-08-24 17:26:02 -04:00
Anders Hafreager d09a85733b Fixed initialization of arrays in computes 2016-08-24 17:26:02 -04:00
Anders Hafreager 0e7ce194eb Fixed initialization of arrays in computes 2016-08-24 17:26:02 -04:00
Steve Plimpton e27196e91c doc files 2016-08-23 16:28:36 -06:00
Steve Plimpton 268fdab71b Merge branch 'small-bugfixes' into integration 2016-08-23 15:39:27 -06:00
Steve Plimpton 8750515cc4 changed dump.cpp back to the way it was 2016-08-23 15:38:38 -06:00
Steve Plimpton 270b07b035 Merge branch 'integration' into small-bugfixes 2016-08-23 15:35:31 -06:00
Steve Plimpton abc5a32c8a gpu lib sync 2016-08-23 15:30:01 -06:00
Steve Plimpton 0a3464eb30 test 2016-08-23 15:27:02 -06:00
athomps 55fe1f6b29 fixed integer division problem in python code snippet 
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15486 f3b2605a-c512-4ea7-a41b-209d697bcdaa
 2016-08-22 22:35:23 +00:00
Axel Kohlmeyer 50a82bb345 address uninitialized variable issues pointed out by valgrind/coverity 2016-08-22 15:49:33 -04:00
Axel Kohlmeyer 5909bd5429 correct bug in tracking atom->nlocal vs. atom->nmax when allocating pbc enforcement buffers 
(cherry picked from commit 45a2dd36d0)
 2016-08-22 14:36:47 -04:00
Axel Kohlmeyer 1383684048 fix bug in recent dump changes for -DLAMMPS_BIGBIG 
(cherry picked from commit a507936878)
 2016-08-22 14:36:47 -04:00
Richard Berger 587bafdf2d Remove memory leak and unnecessary allocation 
(cherry picked from commit c998f7b81f)
 2016-08-22 14:36:46 -04:00
Richard Berger c8fe3799ed Add missing initialization 
(cherry picked from commit 054256cf0a)
 2016-08-22 14:36:46 -04:00
Axel Kohlmeyer 9babb7a4c2 fix indexing bugs in accessing compute and fix labels in fix ave/histo 
(cherry picked from commit 579c527718)
 2016-08-22 14:35:32 -04:00
Axel Kohlmeyer c88e9b46cf thread timing summare needs to be marked as preformatted 
(cherry picked from commit b745636a67)
 2016-08-22 14:35:11 -04:00
Axel Kohlmeyer 730e3cb4ac correct small (but harmless) logic error. 
(cherry picked from commit ac6f4f8a56)
 2016-08-22 14:34:43 -04:00
Axel Kohlmeyer 2a6561e52a add run 0 to USER-TALLY examples to enforce shake constraints on step 0 
(cherry picked from commit 433741564d)
 2016-08-22 14:32:47 -04:00