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937 Commits

Author SHA1 Message Date
Axel Kohlmeyer e7e1827e57 remove variable length arrays in gpu lib 2018-05-08 00:48:53 -04:00
Axel Kohlmeyer 318dfd0613 correct indentation 2018-05-08 00:32:49 -04:00
Axel Kohlmeyer f4d14c96e8 convert poems lib to use c++-style header includes 2018-05-08 00:29:56 -04:00
Axel Kohlmeyer 3394d18a2a convert gpu lib to use c++-style include files 2018-05-08 00:25:10 -04:00
Axel Kohlmeyer ff6507e7b7 convert colvars lib to use c++ style header files 2018-05-08 00:17:57 -04:00
Axel Kohlmeyer fff962646f convert awpmd header include to c++ style 2018-05-08 00:10:20 -04:00
Axel Kohlmeyer f39a8d46d1 convert atc library header files to C++ style 2018-05-08 00:05:18 -04:00
Axel Kohlmeyer 1888b616c4 remove some extra semicolons 2018-05-07 18:04:25 -04:00
Axel Kohlmeyer 104dde27ed eliminate variable length arrays from AtC lib for C++ standard compliance 2018-05-07 17:36:34 -04:00
Axel Kohlmeyer 551ea9694d add VTK config for recent fedora versions 2018-05-07 07:23:29 -04:00
Axel Kohlmeyer f4fbdea0b3 update .gitignore for lib/latte 2018-05-07 07:23:29 -04:00
Axel Kohlmeyer 88dca11b3c update colvars dependencies 2018-05-05 02:36:02 -04:00
Axel Kohlmeyer 460e8bd298 add return value to non-void function 2018-05-05 02:35:42 -04:00
Giacomo Fiorin 0c005f5cb0 Small fixes to Colvars library 
Primarily a list of small fixes, combined with cosmetic changes and cleanups
in several files.

6d0c917 2018-04-29 Fix missing deallocation of output stream object (reported by HanatoK) [Giacomo Fiorin]
c92d369 2018-04-17 Do not test for atom group size [Jérôme Hénin]
431e52a 2018-04-06 Allow scripted/custom colvars to be periodic [Jérôme Hénin]
81d391f 2018-04-05 Split colvarcomp constructor into POD constructor + init() function [Giacomo Fiorin]
9b85d5f 2018-03-13 Fix issue with out-of-order atom selections; clarify format for ref positions [Giacomo Fiorin]
0e0ed37 2018-03-07 Support triclinic unit cells in VMD, clean up PBC functions [Giacomo Fiorin]
eed97c9 2018-02-24 Obtain integer version number from version string [Giacomo Fiorin]
c17f3cd 2018-02-23 Write trajectory labels only when needed [Giacomo Fiorin]
 2018-05-02 15:03:56 -04:00
Steve Plimpton 430027465f
Merge pull request #868 from junghans/latte 
cmake: update latte to v1.1.1
 2018-04-13 08:44:59 -06:00
Axel Kohlmeyer 8f1487fbc6 update lib/latte/Install.py to be consistent with CMake config 2018-04-11 11:20:39 -04:00
Axel Kohlmeyer bc49ce611a restore python3 compatibility 2018-04-09 23:08:49 -04:00
Ryan S. Elliott af8e258ebb Revert to previous code without plug-in interface 2018-04-03 17:17:23 -05:00
Ryan S. Elliott 3f3bab4e71 Create KIM_LAMMPS_PlugIn.h & related changes 2018-04-02 11:45:35 -05:00
Ryan S. Elliott f089d8d247 use correct installed kim lib when adding new models 2018-04-02 09:39:44 -05:00
Ryan S. Elliott 25d2f4b1f6 Update pair_kim for v1.9.4 and versatile linking 
Use dlopen instead of directly linking to kim-api
library.  This will allow for easier distribution
of LAMMPS with support for KIM Models.
 2018-04-02 09:39:44 -05:00
Stan Moore 39786b1740 Update Kokkos library to r2.6.00 2018-03-08 10:57:08 -07:00
Axel Kohlmeyer 812572ea97 update dependencies for colvars library 2018-03-07 10:57:56 -05:00
Axel Kohlmeyer 47e2ca6eb2 apply bugfix to reaxff taper function as described in issue #828 2018-03-07 09:52:14 -05:00
Axel Kohlmeyer a1bdea1dd8 avoid division by zero for pair styles meam and meam/c 2018-03-05 14:03:10 -05:00
Giacomo Fiorin f3cf407a21 Collected fixes and updates to Colvars library 
This commit includes several fixes to moving restraints; also added is support
for runtime integration of 2D and 3D PMFs from ABF.

Mostly changes to existing member functions, with few additions in classes not
directly accessible by LAMMPS.  Also removed are calls to std::pow(), replaced
by a copy of MathSpecial::powint().

Relevant commits in Colvars repository:

7307b5c 2017-12-14 Doc improvements [Giacomo Fiorin]
7f86f37 2017-12-14 Allow K-changing restraints computing accumulated work; fix staged-k TI estimator [Giacomo Fiorin]
7c1c175 2017-12-14 Fix 1D ABF trying to do pABF [Jérôme Hénin]
b94aa7e 2017-11-16 Unify PMF output for 1D, 2D and 3D in ABF [Jérôme Hénin]
771a88f 2017-11-15 Poisson integration for all BC in 2d and 3d [Jérôme Hénin]
6af4d60 2017-12-01 Print message when issuing cv delete in VMD [Giacomo Fiorin]
4413972 2017-11-30 Check for homogeneous colvar to set it periodic [Jérôme Hénin]
95fe4b2 2017-11-06 Allow abf_integrate to start in bin with 1 sample [Jérôme Hénin]
06eea27 2017-10-23 Shorten a few constructs by using the power function [Giacomo Fiorin]
3165dfb 2017-10-20 Move includes of colvarproxy.h from headers to files [Giacomo Fiorin]
32a867b 2017-10-20 Add optimized powint function from LAMMPS headers [Giacomo Fiorin]
3ad070a 2017-10-20 Remove some unused includes, isolate calls to std::pow() [Giacomo Fiorin]
0aaf540 2017-10-20 Replace all calls to std::pow() where the exponent is not an integer [Giacomo Fiorin]
 2018-02-23 08:34:53 -05:00
Axel Kohlmeyer 776f588746 add support for UFM pair style support to OpenCL compilation makefile 2018-02-12 18:43:30 +01:00
Steve Plimpton 4af14becb5
Merge pull request #710 from rpleite/add-pair-ufm 
Add the UFM pair potential - (GPU/OPT/OMP)
 2018-02-02 14:38:28 -07:00
Steve Plimpton 1bd9e175e9
Merge pull request #749 from akohlmey/collected-bugfixes-and-updates 
Collected bugfixes and updates for the next patch release
 2018-01-08 09:20:18 -07:00
Axel Kohlmeyer 75f1a4f3f0 use filelink.o consistently, since filelink does not work with some compilers, e.g. nvcc 2018-01-04 20:43:53 -05:00
Stan Moore a2756db66b Update to Kokkos library v2.5.00 2017-12-15 16:42:06 -07:00
Stan Moore da83feb8ca Merge branch 'master' into kk_update 2017-12-15 16:36:21 -07:00
Axel Kohlmeyer 319508bd29 fix scoping ambiguity issue that confuses nvcc 2017-11-30 10:56:58 -05:00
Stan Moore 7d07f062b6 Remove const from variable 2017-11-20 10:21:19 -07:00
Stan Moore f3ed148828 Fix for big endian machines 2017-11-20 10:18:53 -07:00
Steve Plimpton c4c59b909e
Merge pull request #716 from akohlmey/collected-small-changes 
Collected small changes and bugfixes for next patch
 2017-11-13 09:00:26 -07:00
Stan Moore 88474fc5c2 Remove Kokkos tpls directory 2017-11-06 13:48:26 -07:00
Stan Moore 16b5315845 Update Kokkos to v2.04.11 2017-11-06 13:47:33 -07:00
Axel Kohlmeyer b34000a5e1 make *_gpu_reinit() functions consistent in returning void. correct prototypes in src/GPU, too. 
this supersedes and closes #719
 2017-11-04 02:49:22 -04:00
Axel Kohlmeyer 2dbb44f2c6 provide Makefile.lammps template for use with bundled linalg lib 2017-10-24 13:38:04 -04:00
Axel Kohlmeyer d1630bbe34 add missing BLAS/LAPACK functions used by LATTE to linalg lib 2017-10-24 13:22:20 -04:00
Rodolfo Leite 941ee565a1 Added lal_ufm_ext.cpp in lib/gpu 2017-10-24 11:12:51 -02:00
Rodolfo Leite b63acf6843 Added the UFM files (doc/src - lib/gpu - src) 2017-10-24 11:11:10 -02:00
Giacomo Fiorin f479f02589 Fix a Colvars error that was hidden by the previous segfault 2017-10-20 13:41:31 -04:00
Giacomo Fiorin 6e7504f153 Import segfault fix in Colvars module 2017-10-19 08:09:44 -04:00
Giacomo Fiorin 3e89b270fd Update Colvars to version 2017-10-11 
Notable features are the umbrella-integration based free energy estimator for
eABF, and the traditional thermodynamic integration estimator now available
for umbrella sampling, SMD, metadynamics.  Also included are several small fixes.

Below is a list of relevant commits in the Colvars repository since the last update.

321d06a 2017-10-10 Add macros to manage colvarscript commands [Giacomo Fiorin]
26c3bec 2017-10-09 Document coming availability of Lepton in LAMMPS [Giacomo Fiorin]
cc8f249 2017-10-04 Clarify that SMP depends on code build [Giacomo Fiorin]
0b2ffac 2017-10-04 Summarize colvar definition options, clarify some details [Giacomo Fiorin]
28002e0 2017-10-01 Separate writing of restart file from other output (e.g. PMFs) [Giacomo Fiorin]
92f7c1d 2017-10-01 Deprecate colvarsTrajAppend [Giacomo Fiorin]
12a707f 2017-09-26 Accurate Jacobian calculation for RMSD variants [Jérôme Hénin]
fe389c9 2017-09-21 Allow subtractAppliedForce with extended-L again [Jérôme Hénin]
c050ce0 2017-09-18 Silence compiler warnings, remove Tabs [Giacomo Fiorin]
cb41905 2017-01-11 Add base class for TI estimator in other biases than ABF [Giacomo Fiorin]
a1bc676 2017-09-14 Avoid writing to unopened traj file [Jérôme Hénin]
b58d8cd 2017-09-08 Function to check for overlapping groups [Jérôme Hénin]
1e5efec 2017-09-07 Check for overlapping groups in coordNum [Jérôme Hénin]
03a61a4 2017-04-06 Add UI-based estimator [fhh2626]
ae43754 2017-08-17 Fix outputCenters parsing [Josh Vermaas]
1619e0e 2017-08-14 Delete static feature arrays in cvm destructor [Jérôme Hénin]
 2017-10-13 13:45:10 -04:00
Steve Plimpton 18ca2292c2 Merge pull request #686 from giacomofiorin/lepton-library 
Add Lepton library within lib/colvars
 2017-10-13 09:48:42 -06:00
Giacomo Fiorin d90aad887e Add Lepton library within lib/colvars 2017-10-09 15:25:43 -04:00
Ryan S. Elliott 775a15b9da Update lib/kim for kim-api-v1.9.2 2017-10-09 14:06:30 -05:00
Steve Plimpton 439c2fd980 Merge pull request #677 from stanmoore1/kk_update 
Update to Kokkos r2.04.04 and add workaround for performance regression
 2017-10-05 17:10:00 -06:00
Stan Moore a55adf4a68 Update to Kokkos r2.04.04 and add workaround for performance regression 2017-10-03 11:30:00 -06:00
Axel Kohlmeyer e6969002ce having plain filelink instead of filelink.o confuses KOKKOS linking with nvcc 2017-09-25 19:37:37 -04:00
Steve Plimpton ee487ef4aa Merge pull request #652 from junghans/latte 
Add LATTE fix
 2017-09-22 10:32:19 -06:00
Steve Plimpton a8ae886667 update fix latte examples and virial 2017-09-21 10:40:54 -06:00
Steve Plimpton dd49d54889 new SNAP potentials and examples 2017-09-20 08:54:30 -06:00
Axel Kohlmeyer 59d2e13d48 add .gitignore and add Makefile.lammps.* symlinks to stay consistent with other libraries 2017-09-19 19:06:02 -04:00
Steve Plimpton ac897ea645 LATTE package doc update and some small code changes 2017-09-19 16:27:25 -06:00
Axel Kohlmeyer be96486d66 compile all objects in the GPU library with -fPIC for building shared object 2017-09-19 11:24:48 -04:00
Axel Kohlmeyer 48dd824b26 ignore generated header files with OpenCL kernels 2017-09-19 11:24:38 -04:00
Christoph Junghans 02665e45a4 fix doc in lib/latte/Makefile.lammps.* 2017-09-15 17:52:14 -06:00
Christoph Junghans 17aeccf19f Merge remote-tracking branch 'origin/master' into latte 2017-09-15 16:18:13 -06:00
Giacomo Fiorin f1fce64ff9 Fix small typo to calculation of accumulated work in Colvars 2017-09-14 12:58:00 -04:00
Steve Plimpton f971cd6e45 Merge pull request #647 from rbberger/gpu_opencl_2 
Use OpenCL 2.x API in GPU package when supported
 2017-09-12 10:56:13 -06:00
Steve Plimpton e927794696 Merge pull request #643 from andeplane/gpu_opencl_compile_fix 
Fixed OpenCL compilation issues with __global keywords
 2017-09-12 10:31:22 -06:00
Richard Berger 84b84c10db Use OpenCL 2.x API in GPU package when supported 2017-09-09 19:53:56 -04:00
Christoph Junghans 2f6be88c4a Merge remote-tracking branch 'origin/master' into exaalt 2017-09-08 07:04:12 -06:00
Richard Zamora 7b1542a0ba merging stable and exaalt branches into exaaltstable 2017-09-07 16:31:50 -06:00
Anders Hafreager dbc60d949f Fixed OpenCL compilation issues with __global keywords 2017-09-06 15:08:02 +02:00
Stan Moore cbf3646806 Merge branch 'master' into USER-DPD_kokkos 2017-08-23 15:20:56 -06:00
Steve Plimpton b6c93f96cf Merge pull request #629 from stanmoore1/kokkos_update 
Update Kokkos library to v2.04.00
 2017-08-23 14:39:42 -06:00
Axel Kohlmeyer e88ff8d6f9 correct embedded help for GPU lib Install.py 2017-08-23 15:20:30 -04:00
Stan Moore 5c985946d5 Merge branch 'master' into USER-DPD_kokkos 2017-08-22 13:50:19 -06:00
Stan Moore 090c792d90 Update Kokkos library to v2.04.00 2017-08-22 13:42:02 -06:00
Steve Plimpton c46d5ff422 Merge pull request #612 from giacomofiorin/colvars-update-2017-08-10 
Minor fixes to Colvars module
 2017-08-17 11:32:38 -06:00
Steve Plimpton dd67989c76 Merge pull request #601 from stanmoore1/kokkos_update 
Update Kokkos library to v2.03.13
 2017-08-17 11:32:18 -06:00
Steve Plimpton 00aafef1a8 Merge pull request #597 from ndtrung81/three-body-short-nlist 
Implementing short neighbor lists for three-body gpu styles
 2017-08-17 11:31:59 -06:00
Tim Mattox 4041db8d1a Merge branch 'master' into USER-DPD_kokkos as of patch 10Aug17 2017-08-11 13:25:28 -04:00
Axel Kohlmeyer c6d923b6c8 make download function more resilient by also catching failed execution 2017-08-10 21:15:35 -04:00
Axel Kohlmeyer 6d24be8bb7 whitespace cleanup 2017-08-10 21:14:40 -04:00
Giacomo Fiorin da01be7c18 More robust change from initial to target restraint centers in Colvars 2017-08-10 09:22:53 -04:00
Axel Kohlmeyer 146aa4cdbd fall back to wget when curl is not available 2017-08-10 09:05:23 -04:00
Axel Kohlmeyer 2f3747eb6e we need to override compiler flags in lib/voronoi/Install.py 
The default compiler flags in voro++'s config.mk file do not include
-fPIC, which makes it incompatible with building the shared object for
the python wrapper.
 2017-08-10 08:34:46 -04:00
Axel Kohlmeyer 2bc6ad80d4 avoid writable string and deprecated implicit conversion warning 2017-08-10 07:45:21 -04:00
Axel Kohlmeyer 6780c73907 restore mpic++ makefile to resolve regression test failure 2017-08-09 07:10:08 -04:00
Axel Kohlmeyer b7b1257b01 remove attempts to use urllib and use curl for all downloading. restore printing help with no flags. 2017-08-08 17:00:09 -04:00
Axel Kohlmeyer 30431d4edb rework Install.py for gpu library. make it consistent with other lib folders and support python3 2017-08-08 16:57:27 -04:00
Stan Moore 8a7a831bd6 Remove redundant check in Makefile.kokkos 2017-08-08 12:57:22 -06:00
Axel Kohlmeyer c53a84a967 update README file for lib/mscg 2017-08-08 13:55:12 -04:00
Axel Kohlmeyer d2b0c287d2 add local makefile overrides to be compatible with standard suffixes 2017-08-08 13:19:44 -04:00
Axel Kohlmeyer b3244f9c98 more lib compilation updates 2017-08-08 07:20:33 -04:00
Axel Kohlmeyer 8bba29d91e more lib installation cleanup 2017-08-07 17:21:45 -04:00
Axel Kohlmeyer 135b1650f1 revamp of library builds 
- remove cross compiler stuff
- make use of Install.py consistent
- provide options for Makefile.serial and Makefile.mpi that match those in src
 2017-08-07 17:13:01 -04:00
Axel Kohlmeyer 163ed27618 update .gitignore 2017-08-04 16:10:59 -04:00
Axel Kohlmeyer 23ca0099f7 more updates to kim/Install.py to restore missing functionality and align with other scripts 
- build into local directory to replace existing installation is now default
- add wrapper function that calls curl in case python package has not ssl support
- have to specify -n flag to avoid wiping out the existing installation
- can specify -p to point to an existing kim-api installation (implies -n)
 2017-08-04 14:47:32 -04:00
Stan Moore 8431ca5fec Remove tpls directory 2017-07-31 10:54:07 -06:00
Stan Moore 13f2d39f55 Update Kokkos library to v2.03.13 2017-07-31 10:34:21 -06:00
Axel Kohlmeyer 9bfd9267fa update and automate the QUIP configuration so that no environment variables are needed 2017-07-28 16:11:13 -04:00
Axel Kohlmeyer 3ebf561e0d remove tarball after unpacking 2017-07-28 14:25:47 -04:00
Axel Kohlmeyer ffb778cf9b make Install.py for lib/smd and lib/voronoi consistent 2017-07-28 14:03:29 -04:00
Axel Kohlmeyer f3850da9fe clean up makefiles provide "serial" and "mpi" targets for atc and awpmd 2017-07-28 13:36:06 -04:00
Axel Kohlmeyer e7d9aabca6 Merge branch 'kim-install' into install-and-docs-reviewed 2017-07-28 11:25:08 -04:00
Stan Moore 9695aa6092 Merge branch 'master' into USER-DPD_kokkos_testing 2017-07-27 15:51:56 -06:00
Axel Kohlmeyer c494ec35e2 correct symbolic links to shared Install.py file 2017-07-27 12:48:32 -04:00
Axel Kohlmeyer acf6d54ec1 python3 port, yet untested 2017-07-27 09:25:39 -04:00
Axel Kohlmeyer 0427f6205e fix typo 2017-07-27 09:25:02 -04:00
Axel Kohlmeyer da7a5f55d3 Merge branch 'kim-install' into install-and-docs-reviewed 2017-07-26 19:32:55 -04:00
Axel Kohlmeyer 715c797df0 simplify Install.py for voronoi 2017-07-26 15:14:12 -04:00
Axel Kohlmeyer fd6e11f821 convert copies of Install.py files to symlinks 2017-07-26 14:29:52 -04:00
Axel Kohlmeyer f7a243a4d9 convert explicit copies back into symbolic links 2017-07-26 14:20:03 -04:00
Axel Kohlmeyer f0d286358e must not include system headers within 'extern "C"' blocks. breaks with MPICH 2017-07-26 14:02:02 -04:00
Stan Moore bc446bb8b0 Merge branch 'master' into USER-DPD_kokkos_testing 2017-07-25 12:12:30 -06:00
Trung Nguyen aa60ef6ed8 Cleaned up 3-body kernels, reverted some mistaken changes to vashishta 2017-07-23 00:08:55 -05:00
Trung Nguyen a71f5a0c20 Enabled again neigh no with tpa > 1 for 3-body gpu styles for backward compatibility, could be slower than neigh no tpa 1 in many cases 2017-07-22 22:57:37 -05:00
Trung Nguyen 3d1d0c58c7 Cleaned up 3-body gpu styles, and fixed a bug for tersoff/zbl/gpu. 
There is a unresolved bug for neigh no with tpa > 1 with BaseThree, enforce tpa = 1 for neigh no in BaseThree for now.
 2017-07-21 12:08:04 -05:00
Axel Kohlmeyer 1b704bab18 Merge branch 'colvars-safer-makefiles' of https://github.com/giacomofiorin/lammps into colvars-quickfix 2017-07-20 15:59:23 -04:00
Giacomo Fiorin c98f6140e7 Change order of targets in Makefiles for Colvars 2017-07-20 15:49:31 -04:00
Giacomo Fiorin 5031f5b807 Comment out use by Colvars of Makefile.lammps from other packages 2017-07-20 15:48:10 -04:00
Axel Kohlmeyer 9d0d90c038 README clarification from giacomo 2017-07-20 15:25:27 -04:00
Axel Kohlmeyer 66154e8a8b avoid makefile failure, if LAMMPS has not been configured yet 2017-07-20 15:05:58 -04:00
Ryan S. Elliott 84065dde21 Refactor lib/kim/Install.py; works with phtyon 3 2.7 2017-07-20 12:02:50 -05:00
Giacomo Fiorin ef9fb944c7 Detect number of processors for make 2017-07-20 10:53:08 -04:00
Giacomo Fiorin 187a80be77 Add forgotten decode() in Install.py 2017-07-19 22:21:49 -04:00
Axel Kohlmeyer 355aad9691 restore python3 support. this now can run with python 2.7.13 and 3.5.3. 2017-07-19 17:19:44 -04:00
Giacomo Fiorin ee6cac826e Update Colvars to version 2017-07-15 and support automated builds for it 2017-07-19 14:24:07 -04:00
Ryan S. Elliott f181a0bfab Update lib/kim/Install.py for phthon 2.7 conversion 2017-07-19 12:54:33 -05:00
Axel Kohlmeyer 81f342aafa fix variable name bug and synchronize with other ported Install.py files 2017-07-18 18:06:18 -04:00
Axel Kohlmeyer 7ccb0d37cd port USER-SMD folder. make voronoi consistent with it 2017-07-18 17:37:48 -04:00
Axel Kohlmeyer 03cd4c5255 ported lib/voronoi/Install.py to python 3.x and tested with 2.7 2017-07-18 17:16:10 -04:00
Richard Berger d7355801df Make KIM Install.py Python 3 compatible 2017-07-15 12:03:04 -05:00
Steve Plimpton 296e572e69 better Install.py script for KIM from Ryan Elliott 2017-07-14 16:25:16 -06:00
Trung Nguyen cdac5f496c Built 3-body short neighbor list for the 3-body kernels using per-pair cutoffs for vashishta gpu style 2017-07-11 00:13:56 -05:00
Trung Nguyen 8c9db3ea00 Built 2-body short neighbor list and used for 2-body kernels in tersoff gpu styles 2017-07-10 23:50:21 -05:00
Ryan S. Elliott e30c5fc956 Fixed shebang and renamed to lib/kim/Install.py 2017-07-10 21:05:29 -05:00
Ryan S. Elliott c29e8fba9b Updated lib/kim/README file to go along with new install.py 2017-07-10 17:00:30 -05:00
Ryan S. Elliott 8d592f4b9e Finalized code for lib/kim/install.py 2017-07-10 16:43:23 -05:00
Trung Nguyen ea2b01e83b Refactored 3-body gpu styles to remove code duplication 2017-07-08 20:17:31 -05:00
Trung Nguyen 34fe2273f6 Added short neighbor list implementation for tersoff/zbl/gpu and tersoff/mod/gpu 2017-07-08 14:59:48 -05:00
Trung Nguyen 77c60189b8 Minor cleanups for tersoff/gpu 2017-07-08 14:43:53 -05:00
Trung Nguyen 1c6533e53d Working on short neighbor list for tersoff/gpu 2017-07-08 14:15:26 -05:00
Trung Nguyen 68206079da Supported short neighbor lists for 3-body kernels in sw/gpu and vashishta/gpu 2017-07-07 16:47:24 -05:00
Ryan S. Elliott b0be8b24ea Further work on lib/kim/install.py 2017-07-06 15:50:03 -05:00
Ryan S. Elliott 16fc2d6fe1 Add install.py and update config for kim lib 2017-07-06 15:49:58 -05:00
Stan Moore da0dcbe0bb Updating to master 2017-06-19 10:56:24 -06:00
sjplimp d3c90f3c14 Merge pull request #510 from akohlmey/collected-small-changes 
Collected small changes
 2017-06-15 11:12:14 -06:00
sjplimp 7227bc415d Merge pull request #526 from andeplane/vashishta_gpu 
Implemented pair style vashishta in GPU package
 2017-06-15 08:52:13 -06:00
Anders Hafreager d7646aeeed Fixed opencl error 2017-06-14 12:03:47 +02:00
Anders Hafreager 5f9341813d Removed debug output 2017-06-14 10:57:54 +02:00
Anders Hafreager 8441307185 Removed non-general CUDA-dir in makefile 2017-06-14 10:28:46 +02:00
Anders Hafreager 720af5c360 Added vashishta to OpenCL makefile 2017-06-14 10:27:52 +02:00
Anders Hafreager eeff0b8633 Added vashishta GPU package for NVidia 2017-06-14 10:24:16 +02:00
Axel Kohlmeyer 0ecdb99885 fix uninitialized data access as reported by @martok in #174 2017-06-08 13:50:17 -04:00
Stan Moore 00ce15d043 Remove tpls dir 2017-06-08 10:43:19 -06:00
Stan Moore 5c1d17d1c0 Updating Kokkos lib to v2.03.05 2017-06-08 10:42:08 -06:00
Stan Moore 2cf83d9fca Updating from master to 19May17 2017-05-25 11:21:10 -06:00
Christian Negre 98713680ec added alternative linking line for intel mkl 2017-05-17 11:36:31 -06:00
Richard Berger f8af7edf92 Merge remote-tracking branch 'upstream/master' into python_refactoring 2017-05-06 16:00:22 -04:00
sjplimp fbddfe2729 Merge pull request #455 from stanmoore1/kokkos_update 
Updating Kokkos library to version 2.03.00
 2017-05-04 11:23:39 -06:00
sjplimp dcc5472cba Merge pull request #452 from akohlmey/small-fixes-and-updates 
Small fixes and updates
 2017-05-04 11:23:23 -06:00
Steve Plimpton addd87c0f7 new Section package and start doc pages and build scripts 2017-05-04 11:22:20 -06:00
Axel Kohlmeyer b8cb80b219 rename files in GPU library from cg_cmm to lj_sdk 2017-04-26 19:46:10 -04:00
Axel Kohlmeyer cd435c0c58 change references from cg_cmm to lj_sdk and from cmm to sdk 2017-04-26 19:44:25 -04:00
Stan Moore cc6104aeaf Merge branch 'master' into kokkos_update 2017-04-25 14:11:36 -06:00
Stan Moore 8910ec6e59 Updating Kokkos lib to 2.03.00 2017-04-25 13:48:51 -06:00
Axel Kohlmeyer 25e8ed63a2 whitespace cleanup in VMD plugin headers 2017-04-18 11:46:19 -04:00
Axel Kohlmeyer dee3536144 update VMD molfile plugin headers and move them to lib/molfile (where they belong) 2017-04-18 11:42:31 -04:00
Axel Kohlmeyer 3cbf4f3b58 correct logic bug in else branch of the conditional 2017-04-14 11:57:53 -04:00
Axel Kohlmeyer 6c2dd7ebb1 pass the name of the python interpreter compatible with the python package to 'make install-python' 2017-04-14 11:44:36 -04:00
Richard Berger 9a027a01da Add Python 3 compatibility to PYTHON package 2017-04-11 20:24:42 -04:00
Steve Plimpton 49dd9449b8 fix gcmc updates from Aidan, trimming of output for replica commands 2017-04-11 08:35:09 -06:00
Tim Mattox 17c8e695a4 Merge branch 'master' into USER-DPD_kokkos as of patch 10 Mar 2017 2017-03-10 21:37:52 -05:00
Giacomo Fiorin 5fe6206638 Update Colvars module to version 2017-03-10 2017-03-10 09:16:58 -05:00
Christian Negre 3298c37982 Makefile.lammps.gfortran for latte 2017-03-09 14:30:21 -07:00
Stan Moore de27305227 Merge branch 'master' of https://github.com/lammps/lammps into USER-DPD_kokkos 2017-03-07 11:47:18 -07:00
Richard Berger e261bef7bb Spelling fixes in source files 2017-03-05 18:30:39 -05:00
Tim Mattox 641bf72f20 lib kokkos: Enable deterministic use of Random_XorShift*_Pool. 
Add support for lock-free and deterministic use of Random_XorShift*_Pool
by giving state_idx selection and lock responsibility up to the
application.  Done by an overload of get_state() to take sate_idx as
an argument that the appplication guarantees is concurrently unique
and within the range of num_states that the application passed to init().
In other words, this allows the RNG state to be associated with some
application specific index, rather than a runtime arbitrary thread ID,
and thus the application can control which work is performed using
which RNG in a deterministic manner, regardless of which thread
performs the work.
 2017-03-01 11:52:33 -05:00
Tim Mattox 6e26358ec3 lib kokkos bugfix: on a CUDA host, the random state wasn't preserved. 
Random_XorShift*_Pool<Kokkos::Cuda>::free_state() has two purposes:
1) update the state value kept in the pool
2) unlock the state
For a CUDA host thread, ONLY skip step 2, not both.
 2017-03-01 11:46:26 -05:00
Christian Negre 2dcbc805ba min latte partially fixed 2017-02-23 18:20:02 -07:00
Stan Moore 90e5ae965d Add missing flags to Kokkos Makefile 2017-02-13 11:19:46 -07:00
Stan Moore 33af7ab248 Remove merge line 2017-02-13 10:59:22 -07:00
Stan Moore 8f9b2aca06 Removing unused files in Kokkos lib 2017-02-13 10:53:51 -07:00
Stan Moore 383da816c2 Updating Kokkos lib 2017-02-13 10:50:34 -07:00
Christian Negre 6d47cf350c Makefile for latte_dev 2017-01-19 15:42:09 -07:00
sjplimp d8bc590aaf Merge pull request #327 from stanmoore1/kokkos_lib_update 
Updating Kokkos lib
 2017-01-17 09:04:12 -07:00
Christian Negre aaa7dca21b Makefile.lammps.gfortran 2017-01-12 17:13:02 -07:00
Christian Negre 6bd17be454 Makefile.lammps.gfortran 2017-01-12 16:58:27 -07:00
Christian Negre f51ddf8450 Makefile.lammps.gfortran 2017-01-12 13:50:02 -07:00
Stan Moore 7162cafdf5 Squelching output from Makefile 2017-01-10 14:46:30 -07:00
Stan Moore ee9e7cfbd5 Fixing Kokkos CUDA Makefile issue 2017-01-10 13:22:36 -07:00
Stan Moore 7839c335da Fixing compile error with Kokkos CUDA Makefiles 2017-01-10 13:05:00 -07:00
Christian Negre 1f6cfb1b31 Makefile.lammps.gfortran changed 2017-01-10 10:56:31 -07:00
Steve Plimpton c31f1e9f22 add fix mscg command, example, lib 2017-01-09 13:36:40 -07:00
Stan Moore 9250a55923 Adding enable_lambda to KOKKOS_CUDA_OPTIONS 2017-01-09 12:24:30 -07:00
Stan Moore a9f0b7d523 Updating Kokkos lib 2017-01-09 10:39:46 -07:00
Christian Negre 967cdd947e cleanup 2017-01-05 15:37:01 -07:00
Giacomo Fiorin b0263e87bb Fix missing force with extended-Lagrangian mass 2016-12-27 17:16:32 -05:00
Giacomo Fiorin f553e230db Update Colvars library to version 2016-12-22 
Significant code cleanup and several fixes (walls + extended Lagrangian)

New harmonicWalls bias to apply confining boundaries with time-dependent force
constant & integration
 2016-12-27 13:17:34 -05:00
Giacomo Fiorin 6ab716164b Fix seg fault for gyration collective variable 2016-12-27 13:17:02 -05:00
Giacomo Fiorin 7a45c72b97 Allow extended Lagrangian on non-scalar collective variables 2016-12-27 12:35:30 -05:00
Christian Negre fe99fc287d changes in fix_latte 2016-11-28 15:29:37 -07:00
Christian Negre f040f15218 changes in latte makefile for lattelib and README 2016-11-14 16:11:12 -07:00
Christian Negre f3d6ecf07b changes for lattelib 2016-11-14 07:58:47 -07:00
Steve Plimpton 6f23f6535c initial dummy version of fix_latte.cpp 2016-11-09 13:48:11 -07:00
Giacomo Fiorin 182141b850 Make SMP parallelism for Colvars optional 2016-10-24 17:13:34 -04:00
Giacomo Fiorin e02505c8cc Add ensemble-biased metadynamics (Fabrizio Marinelli, NIH) 2016-10-24 17:11:09 -04:00
Giacomo Fiorin be2d155cef Minor changes and fixes not relevant to LAMMPS 2016-10-24 17:10:52 -04:00
Giacomo Fiorin c243093980 Fix wall forces and subtractAppliedForce for extended-Lagrangian ABF 2016-10-24 17:05:47 -04:00
Giacomo Fiorin ad57a17f48 Add C-linkage wrapper for colvarscript (useful with ctypes) 2016-10-24 16:48:20 -04:00
Axel Kohlmeyer 019bc0ba0b fix typos in Makefile.lammps for NetCDF support 2016-10-19 07:39:03 -04:00
Axel Kohlmeyer 27796b431e avoid distracting error output 2016-10-18 15:32:20 -04:00
Axel Kohlmeyer 2b47fa6653 update Makefile.lammps and add README according to suggestions by lars pastewka 2016-10-18 15:05:30 -04:00
Axel Kohlmeyer 4502d3276b updated Makefile.lammps for NetCDF support based on suggestions from lars pastewka 2016-10-18 14:45:06 -04:00
Axel Kohlmeyer ecb03dd2df import lammps-netcdf code as USER-NC-DUMP package 2016-10-11 23:03:18 -04:00
Axel Kohlmeyer 683689c808 revert to previous style conventions for size_t constants 2016-10-08 11:00:23 -04:00
Axel Kohlmeyer e01e90eb96 workaround for double free issue when using USER-COLVARS with lammps code loaded as shared library into a standalone executable 2016-10-08 10:45:22 -04:00
sjplimp 54fc194e5b Merge pull request #199 from akohlmey/small-changes 
Collected small changes and bugfixes
 2016-10-06 15:49:24 -06:00
A Bartok-Partay 8ea063378e add NETCDF libs (as defined in QUIP) to the linking line if QUIP was built with NETCDF support 2016-10-06 12:16:25 +01:00
Giacomo Fiorin 8809a603fb Colvars update: issue a warning that cannot be ignored regarding total forces 2016-10-05 18:26:21 -04:00
Giacomo Fiorin 969d3cf4b0 Colvars update: make ABF check that the colvar isn't using already subtractAppliedForce 2016-10-05 18:25:40 -04:00
Axel Kohlmeyer 03766dbda7 apply bugfix for MEAM provided by Wolfgang Verestek on lammps-users 
this closes lammps/#188
 2016-10-03 16:28:59 -04:00
Axel Kohlmeyer a3e05a2bac permission cleanup 2016-10-01 06:34:45 -04:00
Axel Kohlmeyer 6d200061ca update colvars library to version 2016-09-30 2016-09-30 08:15:44 -04:00
Axel Kohlmeyer 5b2becd09b Merge branch 'integration' into new-master 2016-09-29 10:37:09 -04:00
sjplimp 484122b8b6 sync with GH 
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15592 f3b2605a-c512-4ea7-a41b-209d697bcdaa
 2016-09-16 19:21:34 +00:00
Axel Kohlmeyer 9637a5b530 colvars bugfix. updates colvars library to version 2016-09-14 2016-09-15 19:44:26 -04:00
Axel Kohlmeyer 14bed44743 ignore Makefile.lammps in lib tree 2016-09-13 09:36:48 -04:00
Axel Kohlmeyer 18cacb8e1d ignore *.mod generated by fortran compilers 2016-09-13 09:36:19 -04:00
sjplimp b190abea39 sync with GH 
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15561 f3b2605a-c512-4ea7-a41b-209d697bcdaa
 2016-09-08 20:20:32 +00:00
sjplimp 07e55ef61e Merge pull request #22 from akohlmey/colvars-update 
accumulated colvars library update and lib "make clean" improvement
 2016-09-08 14:14:49 -06:00
Steve Plimpton 236ebf7fab Kokkos lib update 2016-09-08 13:56:18 -06:00
Axel Kohlmeyer 3a74ccffa2 update colvars library to version 2016-09-03 
(cherry picked from commit 4181f5ac9d)
 2016-09-06 21:28:59 -04:00
Axel Kohlmeyer c8cfd53c1b adjust makefiles in lib tree, so they don't return an error exit code on "make clean" targets. 
(cherry picked from commit 4117218ca3)
 2016-09-06 21:28:55 -04:00
Axel Kohlmeyer 16607a0132 update colvars library to version 2016-08-19 
(cherry picked from commit c67326be6d)
 2016-09-06 21:27:46 -04:00
Axel Kohlmeyer 3b476d914f update colvars to version 2016-08-10 
(cherry picked from commit eba3ad9abb)
 2016-09-06 21:27:46 -04:00
Axel Kohlmeyer 977b9e542f update colvars to another set of changes from the upstream repo 
(cherry picked from commit cb816f8cba)
 2016-09-06 21:27:45 -04:00
Axel Kohlmeyer 1b33d00785 update colvars makefile dependencies 
(cherry picked from commit df99a85930)
 2016-09-06 21:27:45 -04:00
Axel Kohlmeyer 3d2e5d0a50 suppress compiler warning 
(cherry picked from commit 6f227e194e)
 2016-09-06 21:27:45 -04:00
Axel Kohlmeyer ec2a6b9f0d update colvars to version 2016-08-10 
(cherry picked from commit f2ddf828e4)
 2016-09-06 21:27:41 -04:00
Axel Kohlmeyer 77620106a4 update colvars library to version 2016-08-05 
(cherry picked from commit 459db2eb6b)

# Conflicts:
#	doc/src/PDF/colvars-refman-lammps.pdf
 2016-09-06 21:26:50 -04:00
stamoor 39be4185c4 Updating Kokkos lib 
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15556 f3b2605a-c512-4ea7-a41b-209d697bcdaa
 2016-09-06 23:06:32 +00:00
stamoor 1ad033ec0c Updating Kokkos lib 
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15555 f3b2605a-c512-4ea7-a41b-209d697bcdaa
 2016-09-06 23:02:50 +00:00
sjplimp 083ff54c0c small bug fixes 
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15527 f3b2605a-c512-4ea7-a41b-209d697bcdaa
 2016-08-31 20:26:15 +00:00
Steve Plimpton 4051aedf2c Merge branch 'small' into integration 
Conflicts:
	src/compute_omega_chunk.cpp
 2016-08-31 13:58:12 -06:00
Steve Plimpton ec8b9e21db sync with SVN 2016-08-31 13:28:26 -06:00
stamoor dbaaf4dbbd Removing aggressive_vectorization flag due to safety issue 
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15521 f3b2605a-c512-4ea7-a41b-209d697bcdaa
 2016-08-30 17:52:49 +00:00
Axel Kohlmeyer 493613b495 avoid NaNs in MEAM 2016-08-30 06:54:36 -04:00
Steve Plimpton 2beecd1e73 removal of doc/html/_sources and minor sync with SVN 2016-08-26 11:34:37 -06:00
stamoor cc4b2dd6ed Changing default 
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15503 f3b2605a-c512-4ea7-a41b-209d697bcdaa
 2016-08-26 15:50:25 +00:00
Steve Plimpton abc5a32c8a gpu lib sync 2016-08-23 15:30:01 -06:00
sjplimp efaa84a4ea git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15430 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-08-03 19:32:03 +00:00
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sjplimp ee24be38cb git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15371 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-07-27 14:09:42 +00:00
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sjplimp fd27214f7d git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15267 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-07-06 23:26:27 +00:00
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sjplimp a99c922a14 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15249 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-07-01 23:29:38 +00:00
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sjplimp 328224a298 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15181 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-06-16 15:44:41 +00:00
sjplimp a4b82a95e9 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15162 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-06-14 13:58:49 +00:00
sjplimp e653da12a6 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15095 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-06-02 14:03:00 +00:00
sjplimp dfb0f528c0 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15038 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-05-12 13:52:42 +00:00
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stamoor 48d65b7fef Enabling new kokkos view 
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14935 f3b2605a-c512-4ea7-a41b-209d697bcdaa
 2016-05-03 16:24:08 +00:00
sjplimp 91447edb58 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14928 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-05-03 16:11:34 +00:00
stamoor 33ce33ce36 Reverting back to old kokkos view 
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14921 f3b2605a-c512-4ea7-a41b-209d697bcdaa
 2016-05-02 23:40:38 +00:00
stamoor fda492ea48 Updating kokkos lib 
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14919 f3b2605a-c512-4ea7-a41b-209d697bcdaa
 2016-05-02 22:10:37 +00:00
stamoor 0a1b765248 Updating kokkos lib 
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14918 f3b2605a-c512-4ea7-a41b-209d697bcdaa
 2016-05-02 22:06:50 +00:00
sjplimp 00f38fdaf0 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14910 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-04-30 18:06:25 +00:00
sjplimp 17fd5898df git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14900 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-04-28 14:48:56 +00:00
sjplimp 98ed24437d git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14875 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-04-26 18:28:26 +00:00
sjplimp 184d5dc0f0 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14867 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-04-22 17:51:49 +00:00
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sjplimp 20beaccf0f git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14703 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-03-01 20:40:25 +00:00
sjplimp 756480ba64 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14701 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-03-01 20:39:41 +00:00
sjplimp 08b53bb709 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14657 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-02-18 22:31:59 +00:00
sjplimp 52ca6416a0 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14632 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-02-15 22:34:20 +00:00
sjplimp cd14e4314d git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14593 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-02-15 15:32:27 +00:00
stamoor b355fa25f4 Squelching annoying kokkos output 
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14508 f3b2605a-c512-4ea7-a41b-209d697bcdaa
 2016-01-28 21:07:07 +00:00
stamoor 0541d52c17 Fixing Kokkos bug 
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14504 f3b2605a-c512-4ea7-a41b-209d697bcdaa
 2016-01-26 23:49:57 +00:00
sjplimp b5a1ba9bfa git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14371 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-12-15 22:29:37 +00:00
sjplimp 06a217aa08 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14370 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-12-15 22:26:37 +00:00
athomps 88f58beb97 Added latest changes from Albert Bartok 
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14274 f3b2605a-c512-4ea7-a41b-209d697bcdaa
 2015-11-24 16:26:24 +00:00
sjplimp f6c76f4623 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14265 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-11-18 18:23:45 +00:00
sjplimp 449f373db5 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14165 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-10-22 22:08:30 +00:00
sjplimp 61649b57d0 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14075 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-09-24 22:52:20 +00:00
sjplimp 44c8bb9cbf git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14060 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-09-24 20:23:56 +00:00
sjplimp 6f39a0a78d git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14059 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-09-24 20:23:37 +00:00
stamoor cb971f0166 Kokkos bugfix 
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14051 f3b2605a-c512-4ea7-a41b-209d697bcdaa
 2015-09-23 18:10:39 +00:00
sjplimp 942cce877b git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14004 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-09-08 23:38:11 +00:00
sjplimp c7303a1c1d git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14001 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-09-08 14:13:03 +00:00
sjplimp ae980d6fd1 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13986 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-09-02 20:41:38 +00:00
sjplimp 0f3d77ed75 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13950 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-08-28 23:35:43 +00:00
sjplimp fec0587835 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13926 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-08-20 16:53:24 +00:00
stamoor 3fcbe43295 Commented out line (temporarily) that causes a segmentation fault in the USER-AWPMD library 
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13925 f3b2605a-c512-4ea7-a41b-209d697bcdaa
 2015-08-20 15:55:19 +00:00
stamoor 494ee3b26c Updating Kokkos library--adding new folder 
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13922 f3b2605a-c512-4ea7-a41b-209d697bcdaa
 2015-08-19 22:17:15 +00:00
stamoor e2ac7b2352 Updating Kokkos library--first deleting old folder 
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13921 f3b2605a-c512-4ea7-a41b-209d697bcdaa
 2015-08-19 22:12:32 +00:00
sjplimp 3e90c3eeab git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13913 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-08-19 15:43:07 +00:00
sjplimp 185e746ccb git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13908 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-08-19 15:19:08 +00:00
sjplimp 071ded95fc git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13907 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-08-19 15:16:24 +00:00
sjplimp 21f8abda24 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13906 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-08-19 15:15:32 +00:00
sjplimp 1c3e0dbfe9 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13904 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-08-19 14:56:21 +00:00
sjplimp 4731f7e94a git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13856 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-08-10 20:35:31 +00:00
sjplimp f2276c9d9f git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13854 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-08-10 20:27:45 +00:00
sjplimp 2f7344a02a git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13831 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-08-04 19:55:02 +00:00
sjplimp 6e40300d26 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13670 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-07-22 14:36:59 +00:00
stamoor 4e757218e4 Adding missing Kokkos file 
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13636 f3b2605a-c512-4ea7-a41b-209d697bcdaa
 2015-07-17 16:17:51 +00:00
sjplimp 61ec2f78ac git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13583 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-07-14 19:57:25 +00:00
sjplimp 26b23a47cd git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13581 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-07-14 19:55:01 +00:00
sjplimp ade2dca6af git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13506 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-07-02 00:45:28 +00:00
athomps 2b605e29db Describes new QUIP directory structure 
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13499 f3b2605a-c512-4ea7-a41b-209d697bcdaa
 2015-07-01 21:02:16 +00:00
athomps 12b5742f6c Updated to new QUIP directory structure 
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13493 f3b2605a-c512-4ea7-a41b-209d697bcdaa
 2015-06-23 23:18:51 +00:00
sjplimp c3fd41010d git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13464 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-05-15 16:33:17 +00:00
sjplimp c676c2d560 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13445 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-04-30 14:10:18 +00:00
sjplimp f539e43b22 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13444 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-04-30 14:09:42 +00:00
sjplimp 29e574b720 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13400 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-04-11 23:13:07 +00:00
sjplimp 974e1eb022 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13396 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-04-06 15:14:53 +00:00
athomps 2729e19d4a Added one-liner for QUIP 
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13394 f3b2605a-c512-4ea7-a41b-209d697bcdaa
 2015-04-06 14:37:39 +00:00
sjplimp 4825579470 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13252 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-03-18 21:39:32 +00:00
sjplimp 636ef51ae4 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13251 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-03-18 20:45:12 +00:00
sjplimp 5e0e0c3838 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13248 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-03-17 23:13:10 +00:00
sjplimp 141569b290 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13246 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-03-17 23:09:56 +00:00
sjplimp ad91adbedc git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13241 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-03-17 16:08:01 +00:00
sjplimp c63d258cc0 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13239 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-03-17 16:06:12 +00:00
sjplimp 5a0a8f1335 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13207 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-03-09 14:50:53 +00:00
sjplimp 02d90d07e6 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13151 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-02-24 16:29:22 +00:00
sjplimp 067833cf07 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13126 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-02-19 18:20:52 +00:00
sjplimp a2aa6c5be0 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13057 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-02-04 22:09:15 +00:00
sjplimp 7e20001bca git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13056 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-02-04 22:07:12 +00:00
sjplimp 102cb9e0bf git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12913 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-01-09 16:07:15 +00:00
sjplimp 91b6d7f3b3 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12909 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-01-09 15:52:23 +00:00
sjplimp ebcccbf9dd git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12908 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-01-09 15:52:12 +00:00