Steve Plimpton
884e72a4ba
Merge pull request #1008 from akohlmey/support-platform-select
...
OpenCL related fixes and improvements to the GPU package
2018-07-20 14:32:49 -06:00
Axel Kohlmeyer
de8176b4fc
various minor OpenCL related fixes and improvements to the GPU package
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- document previously undocumented OpenCL tune settings
- implement OpenCL platform selection through prefixing the device type with the platform id separated by a colon
- allow passing custom tune parameters though postfixing the device type with the 13 tuneable parameters separated by commas
- remove an extra clear() that would delete device properties structs an cause LAMMPS to output garbage strings
2018-07-20 14:41:54 -04:00
Richard Berger
2eb8d779e8
Fixes a memory leak when using OpenCL
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The GPU package uses OpenCL events for measuring time. These have to be
released to free up memory. I removed the clReleaseEvent() calls in the
clear() method because in some cases they don't exist yet and I couldn't
find a way to check for a valid event (clRetainEvent didn't work). This
at least fixes the massive leak during simulations.
See issue #1006
2018-07-18 18:54:57 -04:00
Steven J. Plimpton
a62b65096b
more error checks for Scafacos usage
2018-07-18 15:48:17 -06:00
Steven J. Plimpton
b0c9fde1dd
more changes from Steve
2018-07-18 15:32:03 -06:00
Steven J. Plimpton
e7f4e059cf
convert to KSspace style rather than fix
2018-07-13 16:46:06 -06:00
Ryan S. Elliott
67e6afaab2
Update to KIM kim-api-v2.0.0-beta.1
2018-07-11 15:09:58 -07:00
Ryan S. Elliott
5bdc295331
Add skin to pair_kim neigh-list cutoffs & update docs
2018-07-11 15:09:58 -07:00
Ryan S. Elliott
955fe583d8
Updated docs for new pair_kim
2018-07-11 15:09:57 -07:00
Ryan S. Elliott
8bbba22867
First working version of pair_kim with kim-api-v2
2018-07-11 15:09:28 -07:00
Gareth Tribello
4734bc09dc
Added descriptions of static linking of PLUMED to README files
2018-07-11 21:56:08 +01:00
Gareth Tribello
492e945b5a
Added options to link plumed statically
2018-07-11 16:39:52 +01:00
Axel Kohlmeyer
ad4f61a5ce
update fatbin makefile for libgpu.a to latest additions
2018-07-10 09:07:54 -04:00
Axel Kohlmeyer
08552fefe9
add md5 checksum support to Install.py for LATTE
2018-06-27 16:52:28 -04:00
Steven J. Plimpton
49a91db0b2
small changes to last LATTE PR, including xControl to upper case
2018-06-25 17:43:31 -06:00
Steve Plimpton
5e48565761
Merge pull request #961 from cnegre/newsystem
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Added newsystem flag to be passed to latte
2018-06-25 17:20:57 -06:00
Axel Kohlmeyer
af91f7fa5d
LAMMPS does not build on windows without this one
2018-06-25 18:13:41 -04:00
Christian F. A. Negre
0cd86bab22
Added new checksum value
2018-06-25 14:58:49 -06:00
Christian F. A. Negre
2165a2aa9b
Changed version on cmakelist and install.py
2018-06-22 10:04:20 -06:00
Steve Plimpton
f5f73b0172
Merge pull request #958 from ndtrung81/gpu-updates
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Bug fixes and updates to the GPU package
2018-06-22 08:52:20 -06:00
Trung Nguyen
28504e91c0
Added missing source files for born/coul/wolf/cs in the gpu library
2018-06-20 15:08:24 -05:00
Trung Nguyen
a9b794b2ab
Updates to the core-shell gpu pair styles
2018-06-20 10:43:13 -05:00
Trung Nguyen
3ae8fdccd8
Updated the kernels for born/coul/long/cs and coul/long/cs gpu styles
2018-06-19 16:22:00 -05:00
Trung Nguyen
70a7b37614
Updated pair coul/long/cs and born/coul/long/cs; updated gpu neighbor builds to support core-shell styles where r2 can be tiny.
2018-06-19 15:50:02 -05:00
Steve Plimpton
fe14bfd1d2
Merge pull request #951 from martok/meam-diaref-fix
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Apply modifications to MEAM & MEAM/C as found by Kyung-Han Kang
2018-06-18 10:29:57 -06:00
Steve Plimpton
16cc613993
Merge pull request #920 from junghans/mscg
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cmake: add DOWNLOAD_MSCG option
2018-06-18 10:06:16 -06:00
Trung Nguyen
6842a527e0
Fixed bugs and added born/coul/long/cs/gpu and coul/long/cs/gpu, need tests
2018-06-18 00:15:28 -05:00
Trung Nguyen
265b6c261e
Fixed bugs with lj/expand/coul/long and its gpu version
2018-06-15 23:38:37 -05:00
Axel Kohlmeyer
fe483a769f
update makefiles in lib/linalg to support .F files in addition to .f files
2018-06-15 15:35:34 -04:00
Axel Kohlmeyer
f312fbfe32
update Install.py to use a specific numbered release version instead of master
2018-06-15 15:16:10 -04:00
Sebastian Hütter
f68c6dddb8
Apply modifications to MEAM & MEAM/C as found by Kyung-Han Kang
2018-06-15 12:33:38 +02:00
Steve Plimpton
661848139c
Merge pull request #926 from ndtrung81/gpu-updates
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some updates to the GPU package
2018-06-13 12:57:01 -06:00
Christoph Junghans
37268e435b
Merge remote-tracking branch 'origin/master' into mscg
2018-06-08 18:06:06 -06:00
ndtrung
a4a3133b76
Switched to standard C++ header files for consistency with other source files
2018-06-01 23:13:49 -05:00
Stan Moore
c27e617fd8
Add logic to Makefile.kokkos
2018-05-29 11:33:18 -06:00
Stan Moore
1422b0413b
Update Kokkos library to v2.7.00
2018-05-25 15:00:53 -06:00
Trung Nguyen
341fa160fe
Updated UCL_Device built with OpenCL to use platforms that support accelerators by default
2018-05-23 16:11:55 -05:00
Trung Nguyen
2f9e6d4566
Fixed bugs in lal_device.cpp with node_names dynamically allocated and dipole/long/gpu
2018-05-21 23:32:25 -05:00
Axel Kohlmeyer
4ec31564fe
fix preprocessor directive bug in lib/atc
2018-05-21 16:50:16 -04:00
Trung Nguyen
838a1938bb
Added pair styles lj/expand/coul/long to USER-MISC and its gpu version to GPU package, added lj/cut/dipole/long/gpu; and added an example Makfile to build GPU package for multi-arch
2018-05-20 17:03:12 -05:00
Christoph Junghans
2e7b919774
linalg: update to netlib lapack-3.7.1
2018-05-18 15:20:47 -06:00
Christoph Junghans
858c211fdc
linalg: add functions needed for MSCG
2018-05-18 15:08:08 -06:00
Stan Moore
5a4a7cebc1
Fix performance regression in KOKKOS package
2018-05-16 16:12:05 -06:00
Steve Plimpton
bebf25dcb3
Merge pull request #912 from ellio167/kim-update
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Update to kim-api-v1.9.5
2018-05-14 16:16:18 -06:00
Ryan S. Elliott
09046ad3f7
Update to kim-api-v1.9.5
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Fixes the 'everything' option
2018-05-12 10:08:09 -05:00
Axel Kohlmeyer
233f03ea8e
windows portability bugfix
2018-05-11 18:03:49 -04:00
Axel Kohlmeyer
724ade0af3
silence compiler warnings about bool vs int in AtC lib
2018-05-10 18:48:47 -04:00
Axel Kohlmeyer
40a8b1af79
fix stupid bug in AtC when using alloca() instead of VLAs
2018-05-10 17:42:10 -04:00
Axel Kohlmeyer
79d1d3458e
revive lib/atc/Makefile.mpic++
2018-05-10 15:44:36 -04:00
Axel Kohlmeyer
fccc16f42c
tune OpenCL for generic architecture by default
2018-05-08 00:50:23 -04:00
Axel Kohlmeyer
e7e1827e57
remove variable length arrays in gpu lib
2018-05-08 00:48:53 -04:00
Axel Kohlmeyer
318dfd0613
correct indentation
2018-05-08 00:32:49 -04:00
Axel Kohlmeyer
f4d14c96e8
convert poems lib to use c++-style header includes
2018-05-08 00:29:56 -04:00
Axel Kohlmeyer
3394d18a2a
convert gpu lib to use c++-style include files
2018-05-08 00:25:10 -04:00
Axel Kohlmeyer
ff6507e7b7
convert colvars lib to use c++ style header files
2018-05-08 00:17:57 -04:00
Axel Kohlmeyer
fff962646f
convert awpmd header include to c++ style
2018-05-08 00:10:20 -04:00
Axel Kohlmeyer
f39a8d46d1
convert atc library header files to C++ style
2018-05-08 00:05:18 -04:00
Axel Kohlmeyer
1888b616c4
remove some extra semicolons
2018-05-07 18:04:25 -04:00
Axel Kohlmeyer
104dde27ed
eliminate variable length arrays from AtC lib for C++ standard compliance
2018-05-07 17:36:34 -04:00
Axel Kohlmeyer
551ea9694d
add VTK config for recent fedora versions
2018-05-07 07:23:29 -04:00
Axel Kohlmeyer
f4fbdea0b3
update .gitignore for lib/latte
2018-05-07 07:23:29 -04:00
Axel Kohlmeyer
88dca11b3c
update colvars dependencies
2018-05-05 02:36:02 -04:00
Axel Kohlmeyer
460e8bd298
add return value to non-void function
2018-05-05 02:35:42 -04:00
Giacomo Fiorin
0c005f5cb0
Small fixes to Colvars library
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Primarily a list of small fixes, combined with cosmetic changes and cleanups
in several files.
6d0c917 2018-04-29 Fix missing deallocation of output stream object (reported by HanatoK) [Giacomo Fiorin]
c92d369 2018-04-17 Do not test for atom group size [Jérôme Hénin]
431e52a 2018-04-06 Allow scripted/custom colvars to be periodic [Jérôme Hénin]
81d391f 2018-04-05 Split colvarcomp constructor into POD constructor + init() function [Giacomo Fiorin]
9b85d5f 2018-03-13 Fix issue with out-of-order atom selections; clarify format for ref positions [Giacomo Fiorin]
0e0ed37 2018-03-07 Support triclinic unit cells in VMD, clean up PBC functions [Giacomo Fiorin]
eed97c9 2018-02-24 Obtain integer version number from version string [Giacomo Fiorin]
c17f3cd 2018-02-23 Write trajectory labels only when needed [Giacomo Fiorin]
2018-05-02 15:03:56 -04:00
Steve Plimpton
430027465f
Merge pull request #868 from junghans/latte
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cmake: update latte to v1.1.1
2018-04-13 08:44:59 -06:00
Axel Kohlmeyer
8f1487fbc6
update lib/latte/Install.py to be consistent with CMake config
2018-04-11 11:20:39 -04:00
Axel Kohlmeyer
bc49ce611a
restore python3 compatibility
2018-04-09 23:08:49 -04:00
Ryan S. Elliott
af8e258ebb
Revert to previous code without plug-in interface
2018-04-03 17:17:23 -05:00
Ryan S. Elliott
3f3bab4e71
Create KIM_LAMMPS_PlugIn.h & related changes
2018-04-02 11:45:35 -05:00
Ryan S. Elliott
f089d8d247
use correct installed kim lib when adding new models
2018-04-02 09:39:44 -05:00
Ryan S. Elliott
25d2f4b1f6
Update pair_kim for v1.9.4 and versatile linking
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Use dlopen instead of directly linking to kim-api
library. This will allow for easier distribution
of LAMMPS with support for KIM Models.
2018-04-02 09:39:44 -05:00
Stan Moore
39786b1740
Update Kokkos library to r2.6.00
2018-03-08 10:57:08 -07:00
Axel Kohlmeyer
812572ea97
update dependencies for colvars library
2018-03-07 10:57:56 -05:00
Axel Kohlmeyer
47e2ca6eb2
apply bugfix to reaxff taper function as described in issue #828
2018-03-07 09:52:14 -05:00
Axel Kohlmeyer
a1bdea1dd8
avoid division by zero for pair styles meam and meam/c
2018-03-05 14:03:10 -05:00
Giacomo Fiorin
f3cf407a21
Collected fixes and updates to Colvars library
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This commit includes several fixes to moving restraints; also added is support
for runtime integration of 2D and 3D PMFs from ABF.
Mostly changes to existing member functions, with few additions in classes not
directly accessible by LAMMPS. Also removed are calls to std::pow(), replaced
by a copy of MathSpecial::powint().
Relevant commits in Colvars repository:
7307b5c 2017-12-14 Doc improvements [Giacomo Fiorin]
7f86f37 2017-12-14 Allow K-changing restraints computing accumulated work; fix staged-k TI estimator [Giacomo Fiorin]
7c1c175 2017-12-14 Fix 1D ABF trying to do pABF [Jérôme Hénin]
b94aa7e 2017-11-16 Unify PMF output for 1D, 2D and 3D in ABF [Jérôme Hénin]
771a88f 2017-11-15 Poisson integration for all BC in 2d and 3d [Jérôme Hénin]
6af4d60 2017-12-01 Print message when issuing cv delete in VMD [Giacomo Fiorin]
4413972 2017-11-30 Check for homogeneous colvar to set it periodic [Jérôme Hénin]
95fe4b2 2017-11-06 Allow abf_integrate to start in bin with 1 sample [Jérôme Hénin]
06eea27 2017-10-23 Shorten a few constructs by using the power function [Giacomo Fiorin]
3165dfb 2017-10-20 Move includes of colvarproxy.h from headers to files [Giacomo Fiorin]
32a867b 2017-10-20 Add optimized powint function from LAMMPS headers [Giacomo Fiorin]
3ad070a 2017-10-20 Remove some unused includes, isolate calls to std::pow() [Giacomo Fiorin]
0aaf540 2017-10-20 Replace all calls to std::pow() where the exponent is not an integer [Giacomo Fiorin]
2018-02-23 08:34:53 -05:00
Axel Kohlmeyer
776f588746
add support for UFM pair style support to OpenCL compilation makefile
2018-02-12 18:43:30 +01:00
Steve Plimpton
4af14becb5
Merge pull request #710 from rpleite/add-pair-ufm
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Add the UFM pair potential - (GPU/OPT/OMP)
2018-02-02 14:38:28 -07:00
Steve Plimpton
1bd9e175e9
Merge pull request #749 from akohlmey/collected-bugfixes-and-updates
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Collected bugfixes and updates for the next patch release
2018-01-08 09:20:18 -07:00
Axel Kohlmeyer
75f1a4f3f0
use filelink.o consistently, since filelink does not work with some compilers, e.g. nvcc
2018-01-04 20:43:53 -05:00
Stan Moore
a2756db66b
Update to Kokkos library v2.5.00
2017-12-15 16:42:06 -07:00
Stan Moore
da83feb8ca
Merge branch 'master' into kk_update
2017-12-15 16:36:21 -07:00
Axel Kohlmeyer
319508bd29
fix scoping ambiguity issue that confuses nvcc
2017-11-30 10:56:58 -05:00
Stan Moore
7d07f062b6
Remove const from variable
2017-11-20 10:21:19 -07:00
Stan Moore
f3ed148828
Fix for big endian machines
2017-11-20 10:18:53 -07:00
Steve Plimpton
c4c59b909e
Merge pull request #716 from akohlmey/collected-small-changes
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Collected small changes and bugfixes for next patch
2017-11-13 09:00:26 -07:00
Stan Moore
88474fc5c2
Remove Kokkos tpls directory
2017-11-06 13:48:26 -07:00
Stan Moore
16b5315845
Update Kokkos to v2.04.11
2017-11-06 13:47:33 -07:00
Axel Kohlmeyer
b34000a5e1
make *_gpu_reinit() functions consistent in returning void. correct prototypes in src/GPU, too.
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this supersedes and closes #719
2017-11-04 02:49:22 -04:00
Axel Kohlmeyer
2dbb44f2c6
provide Makefile.lammps template for use with bundled linalg lib
2017-10-24 13:38:04 -04:00
Axel Kohlmeyer
d1630bbe34
add missing BLAS/LAPACK functions used by LATTE to linalg lib
2017-10-24 13:22:20 -04:00
Rodolfo Leite
941ee565a1
Added lal_ufm_ext.cpp in lib/gpu
2017-10-24 11:12:51 -02:00
Rodolfo Leite
b63acf6843
Added the UFM files (doc/src - lib/gpu - src)
2017-10-24 11:11:10 -02:00
Giacomo Fiorin
f479f02589
Fix a Colvars error that was hidden by the previous segfault
2017-10-20 13:41:31 -04:00
Giacomo Fiorin
6e7504f153
Import segfault fix in Colvars module
2017-10-19 08:09:44 -04:00
Giacomo Fiorin
3e89b270fd
Update Colvars to version 2017-10-11
...
Notable features are the umbrella-integration based free energy estimator for
eABF, and the traditional thermodynamic integration estimator now available
for umbrella sampling, SMD, metadynamics. Also included are several small fixes.
Below is a list of relevant commits in the Colvars repository since the last update.
321d06a 2017-10-10 Add macros to manage colvarscript commands [Giacomo Fiorin]
26c3bec 2017-10-09 Document coming availability of Lepton in LAMMPS [Giacomo Fiorin]
cc8f249 2017-10-04 Clarify that SMP depends on code build [Giacomo Fiorin]
0b2ffac 2017-10-04 Summarize colvar definition options, clarify some details [Giacomo Fiorin]
28002e0 2017-10-01 Separate writing of restart file from other output (e.g. PMFs) [Giacomo Fiorin]
92f7c1d 2017-10-01 Deprecate colvarsTrajAppend [Giacomo Fiorin]
12a707f 2017-09-26 Accurate Jacobian calculation for RMSD variants [Jérôme Hénin]
fe389c9 2017-09-21 Allow subtractAppliedForce with extended-L again [Jérôme Hénin]
c050ce0 2017-09-18 Silence compiler warnings, remove Tabs [Giacomo Fiorin]
cb41905 2017-01-11 Add base class for TI estimator in other biases than ABF [Giacomo Fiorin]
a1bc676 2017-09-14 Avoid writing to unopened traj file [Jérôme Hénin]
b58d8cd 2017-09-08 Function to check for overlapping groups [Jérôme Hénin]
1e5efec 2017-09-07 Check for overlapping groups in coordNum [Jérôme Hénin]
03a61a4 2017-04-06 Add UI-based estimator [fhh2626]
ae43754 2017-08-17 Fix outputCenters parsing [Josh Vermaas]
1619e0e 2017-08-14 Delete static feature arrays in cvm destructor [Jérôme Hénin]
2017-10-13 13:45:10 -04:00
Steve Plimpton
18ca2292c2
Merge pull request #686 from giacomofiorin/lepton-library
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Add Lepton library within lib/colvars
2017-10-13 09:48:42 -06:00
Giacomo Fiorin
d90aad887e
Add Lepton library within lib/colvars
2017-10-09 15:25:43 -04:00
Ryan S. Elliott
775a15b9da
Update lib/kim for kim-api-v1.9.2
2017-10-09 14:06:30 -05:00
Steve Plimpton
439c2fd980
Merge pull request #677 from stanmoore1/kk_update
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Update to Kokkos r2.04.04 and add workaround for performance regression
2017-10-05 17:10:00 -06:00
Stan Moore
a55adf4a68
Update to Kokkos r2.04.04 and add workaround for performance regression
2017-10-03 11:30:00 -06:00
Axel Kohlmeyer
e6969002ce
having plain filelink instead of filelink.o confuses KOKKOS linking with nvcc
2017-09-25 19:37:37 -04:00
Steve Plimpton
ee487ef4aa
Merge pull request #652 from junghans/latte
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Add LATTE fix
2017-09-22 10:32:19 -06:00
Steve Plimpton
a8ae886667
update fix latte examples and virial
2017-09-21 10:40:54 -06:00
Steve Plimpton
dd49d54889
new SNAP potentials and examples
2017-09-20 08:54:30 -06:00
Axel Kohlmeyer
59d2e13d48
add .gitignore and add Makefile.lammps.* symlinks to stay consistent with other libraries
2017-09-19 19:06:02 -04:00
Steve Plimpton
ac897ea645
LATTE package doc update and some small code changes
2017-09-19 16:27:25 -06:00
Axel Kohlmeyer
be96486d66
compile all objects in the GPU library with -fPIC for building shared object
2017-09-19 11:24:48 -04:00
Axel Kohlmeyer
48dd824b26
ignore generated header files with OpenCL kernels
2017-09-19 11:24:38 -04:00
Christoph Junghans
02665e45a4
fix doc in lib/latte/Makefile.lammps.*
2017-09-15 17:52:14 -06:00
Christoph Junghans
17aeccf19f
Merge remote-tracking branch 'origin/master' into latte
2017-09-15 16:18:13 -06:00
Giacomo Fiorin
f1fce64ff9
Fix small typo to calculation of accumulated work in Colvars
2017-09-14 12:58:00 -04:00
Steve Plimpton
f971cd6e45
Merge pull request #647 from rbberger/gpu_opencl_2
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Use OpenCL 2.x API in GPU package when supported
2017-09-12 10:56:13 -06:00
Steve Plimpton
e927794696
Merge pull request #643 from andeplane/gpu_opencl_compile_fix
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Fixed OpenCL compilation issues with __global keywords
2017-09-12 10:31:22 -06:00
Richard Berger
84b84c10db
Use OpenCL 2.x API in GPU package when supported
2017-09-09 19:53:56 -04:00
Christoph Junghans
2f6be88c4a
Merge remote-tracking branch 'origin/master' into exaalt
2017-09-08 07:04:12 -06:00
Richard Zamora
7b1542a0ba
merging stable and exaalt branches into exaaltstable
2017-09-07 16:31:50 -06:00
Anders Hafreager
dbc60d949f
Fixed OpenCL compilation issues with __global keywords
2017-09-06 15:08:02 +02:00
Stan Moore
cbf3646806
Merge branch 'master' into USER-DPD_kokkos
2017-08-23 15:20:56 -06:00
Steve Plimpton
b6c93f96cf
Merge pull request #629 from stanmoore1/kokkos_update
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Update Kokkos library to v2.04.00
2017-08-23 14:39:42 -06:00
Axel Kohlmeyer
e88ff8d6f9
correct embedded help for GPU lib Install.py
2017-08-23 15:20:30 -04:00
Stan Moore
5c985946d5
Merge branch 'master' into USER-DPD_kokkos
2017-08-22 13:50:19 -06:00
Stan Moore
090c792d90
Update Kokkos library to v2.04.00
2017-08-22 13:42:02 -06:00
Steve Plimpton
c46d5ff422
Merge pull request #612 from giacomofiorin/colvars-update-2017-08-10
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Minor fixes to Colvars module
2017-08-17 11:32:38 -06:00
Steve Plimpton
dd67989c76
Merge pull request #601 from stanmoore1/kokkos_update
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Update Kokkos library to v2.03.13
2017-08-17 11:32:18 -06:00
Steve Plimpton
00aafef1a8
Merge pull request #597 from ndtrung81/three-body-short-nlist
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Implementing short neighbor lists for three-body gpu styles
2017-08-17 11:31:59 -06:00
Tim Mattox
4041db8d1a
Merge branch 'master' into USER-DPD_kokkos as of patch 10Aug17
2017-08-11 13:25:28 -04:00
Axel Kohlmeyer
c6d923b6c8
make download function more resilient by also catching failed execution
2017-08-10 21:15:35 -04:00
Axel Kohlmeyer
6d24be8bb7
whitespace cleanup
2017-08-10 21:14:40 -04:00
Giacomo Fiorin
da01be7c18
More robust change from initial to target restraint centers in Colvars
2017-08-10 09:22:53 -04:00
Axel Kohlmeyer
146aa4cdbd
fall back to wget when curl is not available
2017-08-10 09:05:23 -04:00
Axel Kohlmeyer
2f3747eb6e
we need to override compiler flags in lib/voronoi/Install.py
...
The default compiler flags in voro++'s config.mk file do not include
-fPIC, which makes it incompatible with building the shared object for
the python wrapper.
2017-08-10 08:34:46 -04:00
Axel Kohlmeyer
2bc6ad80d4
avoid writable string and deprecated implicit conversion warning
2017-08-10 07:45:21 -04:00
Axel Kohlmeyer
6780c73907
restore mpic++ makefile to resolve regression test failure
2017-08-09 07:10:08 -04:00
Axel Kohlmeyer
b7b1257b01
remove attempts to use urllib and use curl for all downloading. restore printing help with no flags.
2017-08-08 17:00:09 -04:00
Axel Kohlmeyer
30431d4edb
rework Install.py for gpu library. make it consistent with other lib folders and support python3
2017-08-08 16:57:27 -04:00
Stan Moore
8a7a831bd6
Remove redundant check in Makefile.kokkos
2017-08-08 12:57:22 -06:00
Axel Kohlmeyer
c53a84a967
update README file for lib/mscg
2017-08-08 13:55:12 -04:00
Axel Kohlmeyer
d2b0c287d2
add local makefile overrides to be compatible with standard suffixes
2017-08-08 13:19:44 -04:00
Axel Kohlmeyer
b3244f9c98
more lib compilation updates
2017-08-08 07:20:33 -04:00
Axel Kohlmeyer
8bba29d91e
more lib installation cleanup
2017-08-07 17:21:45 -04:00
Axel Kohlmeyer
135b1650f1
revamp of library builds
...
- remove cross compiler stuff
- make use of Install.py consistent
- provide options for Makefile.serial and Makefile.mpi that match those in src
2017-08-07 17:13:01 -04:00
Axel Kohlmeyer
163ed27618
update .gitignore
2017-08-04 16:10:59 -04:00
Axel Kohlmeyer
23ca0099f7
more updates to kim/Install.py to restore missing functionality and align with other scripts
...
- build into local directory to replace existing installation is now default
- add wrapper function that calls curl in case python package has not ssl support
- have to specify -n flag to avoid wiping out the existing installation
- can specify -p to point to an existing kim-api installation (implies -n)
2017-08-04 14:47:32 -04:00
Stan Moore
8431ca5fec
Remove tpls directory
2017-07-31 10:54:07 -06:00
Stan Moore
13f2d39f55
Update Kokkos library to v2.03.13
2017-07-31 10:34:21 -06:00
Axel Kohlmeyer
9bfd9267fa
update and automate the QUIP configuration so that no environment variables are needed
2017-07-28 16:11:13 -04:00
Axel Kohlmeyer
3ebf561e0d
remove tarball after unpacking
2017-07-28 14:25:47 -04:00
Axel Kohlmeyer
ffb778cf9b
make Install.py for lib/smd and lib/voronoi consistent
2017-07-28 14:03:29 -04:00
Axel Kohlmeyer
f3850da9fe
clean up makefiles provide "serial" and "mpi" targets for atc and awpmd
2017-07-28 13:36:06 -04:00
Axel Kohlmeyer
e7d9aabca6
Merge branch 'kim-install' into install-and-docs-reviewed
2017-07-28 11:25:08 -04:00
Stan Moore
9695aa6092
Merge branch 'master' into USER-DPD_kokkos_testing
2017-07-27 15:51:56 -06:00
Axel Kohlmeyer
c494ec35e2
correct symbolic links to shared Install.py file
2017-07-27 12:48:32 -04:00
Axel Kohlmeyer
acf6d54ec1
python3 port, yet untested
2017-07-27 09:25:39 -04:00
Axel Kohlmeyer
0427f6205e
fix typo
2017-07-27 09:25:02 -04:00
Axel Kohlmeyer
da7a5f55d3
Merge branch 'kim-install' into install-and-docs-reviewed
2017-07-26 19:32:55 -04:00
Axel Kohlmeyer
715c797df0
simplify Install.py for voronoi
2017-07-26 15:14:12 -04:00
Axel Kohlmeyer
fd6e11f821
convert copies of Install.py files to symlinks
2017-07-26 14:29:52 -04:00
Axel Kohlmeyer
f7a243a4d9
convert explicit copies back into symbolic links
2017-07-26 14:20:03 -04:00
Axel Kohlmeyer
f0d286358e
must not include system headers within 'extern "C"' blocks. breaks with MPICH
2017-07-26 14:02:02 -04:00
Stan Moore
bc446bb8b0
Merge branch 'master' into USER-DPD_kokkos_testing
2017-07-25 12:12:30 -06:00
Trung Nguyen
aa60ef6ed8
Cleaned up 3-body kernels, reverted some mistaken changes to vashishta
2017-07-23 00:08:55 -05:00
Trung Nguyen
a71f5a0c20
Enabled again neigh no with tpa > 1 for 3-body gpu styles for backward compatibility, could be slower than neigh no tpa 1 in many cases
2017-07-22 22:57:37 -05:00
Trung Nguyen
3d1d0c58c7
Cleaned up 3-body gpu styles, and fixed a bug for tersoff/zbl/gpu.
...
There is a unresolved bug for neigh no with tpa > 1 with BaseThree, enforce tpa = 1 for neigh no in BaseThree for now.
2017-07-21 12:08:04 -05:00
Axel Kohlmeyer
1b704bab18
Merge branch 'colvars-safer-makefiles' of https://github.com/giacomofiorin/lammps into colvars-quickfix
2017-07-20 15:59:23 -04:00
Giacomo Fiorin
c98f6140e7
Change order of targets in Makefiles for Colvars
2017-07-20 15:49:31 -04:00
Giacomo Fiorin
5031f5b807
Comment out use by Colvars of Makefile.lammps from other packages
2017-07-20 15:48:10 -04:00
Axel Kohlmeyer
9d0d90c038
README clarification from giacomo
2017-07-20 15:25:27 -04:00
Axel Kohlmeyer
66154e8a8b
avoid makefile failure, if LAMMPS has not been configured yet
2017-07-20 15:05:58 -04:00
Ryan S. Elliott
84065dde21
Refactor lib/kim/Install.py; works with phtyon 3 2.7
2017-07-20 12:02:50 -05:00
Giacomo Fiorin
ef9fb944c7
Detect number of processors for make
2017-07-20 10:53:08 -04:00
Giacomo Fiorin
187a80be77
Add forgotten decode() in Install.py
2017-07-19 22:21:49 -04:00
Axel Kohlmeyer
355aad9691
restore python3 support. this now can run with python 2.7.13 and 3.5.3.
2017-07-19 17:19:44 -04:00
Giacomo Fiorin
ee6cac826e
Update Colvars to version 2017-07-15 and support automated builds for it
2017-07-19 14:24:07 -04:00
Ryan S. Elliott
f181a0bfab
Update lib/kim/Install.py for phthon 2.7 conversion
2017-07-19 12:54:33 -05:00
Axel Kohlmeyer
81f342aafa
fix variable name bug and synchronize with other ported Install.py files
2017-07-18 18:06:18 -04:00
Axel Kohlmeyer
7ccb0d37cd
port USER-SMD folder. make voronoi consistent with it
2017-07-18 17:37:48 -04:00
Axel Kohlmeyer
03cd4c5255
ported lib/voronoi/Install.py to python 3.x and tested with 2.7
2017-07-18 17:16:10 -04:00
Richard Berger
d7355801df
Make KIM Install.py Python 3 compatible
2017-07-15 12:03:04 -05:00
Steve Plimpton
296e572e69
better Install.py script for KIM from Ryan Elliott
2017-07-14 16:25:16 -06:00
Trung Nguyen
cdac5f496c
Built 3-body short neighbor list for the 3-body kernels using per-pair cutoffs for vashishta gpu style
2017-07-11 00:13:56 -05:00
Trung Nguyen
8c9db3ea00
Built 2-body short neighbor list and used for 2-body kernels in tersoff gpu styles
2017-07-10 23:50:21 -05:00
Ryan S. Elliott
e30c5fc956
Fixed shebang and renamed to lib/kim/Install.py
2017-07-10 21:05:29 -05:00
Ryan S. Elliott
c29e8fba9b
Updated lib/kim/README file to go along with new install.py
2017-07-10 17:00:30 -05:00
Ryan S. Elliott
8d592f4b9e
Finalized code for lib/kim/install.py
2017-07-10 16:43:23 -05:00
Trung Nguyen
ea2b01e83b
Refactored 3-body gpu styles to remove code duplication
2017-07-08 20:17:31 -05:00
Trung Nguyen
34fe2273f6
Added short neighbor list implementation for tersoff/zbl/gpu and tersoff/mod/gpu
2017-07-08 14:59:48 -05:00
Trung Nguyen
77c60189b8
Minor cleanups for tersoff/gpu
2017-07-08 14:43:53 -05:00
Trung Nguyen
1c6533e53d
Working on short neighbor list for tersoff/gpu
2017-07-08 14:15:26 -05:00
Trung Nguyen
68206079da
Supported short neighbor lists for 3-body kernels in sw/gpu and vashishta/gpu
2017-07-07 16:47:24 -05:00
Ryan S. Elliott
b0be8b24ea
Further work on lib/kim/install.py
2017-07-06 15:50:03 -05:00
Ryan S. Elliott
16fc2d6fe1
Add install.py and update config for kim lib
2017-07-06 15:49:58 -05:00
Stan Moore
da0dcbe0bb
Updating to master
2017-06-19 10:56:24 -06:00
sjplimp
d3c90f3c14
Merge pull request #510 from akohlmey/collected-small-changes
...
Collected small changes
2017-06-15 11:12:14 -06:00
sjplimp
7227bc415d
Merge pull request #526 from andeplane/vashishta_gpu
...
Implemented pair style vashishta in GPU package
2017-06-15 08:52:13 -06:00
Anders Hafreager
d7646aeeed
Fixed opencl error
2017-06-14 12:03:47 +02:00
Anders Hafreager
5f9341813d
Removed debug output
2017-06-14 10:57:54 +02:00
Anders Hafreager
8441307185
Removed non-general CUDA-dir in makefile
2017-06-14 10:28:46 +02:00
Anders Hafreager
720af5c360
Added vashishta to OpenCL makefile
2017-06-14 10:27:52 +02:00
Anders Hafreager
eeff0b8633
Added vashishta GPU package for NVidia
2017-06-14 10:24:16 +02:00
Axel Kohlmeyer
0ecdb99885
fix uninitialized data access as reported by @martok in #174
2017-06-08 13:50:17 -04:00
Stan Moore
00ce15d043
Remove tpls dir
2017-06-08 10:43:19 -06:00
Stan Moore
5c1d17d1c0
Updating Kokkos lib to v2.03.05
2017-06-08 10:42:08 -06:00
Stan Moore
2cf83d9fca
Updating from master to 19May17
2017-05-25 11:21:10 -06:00
Christian Negre
98713680ec
added alternative linking line for intel mkl
2017-05-17 11:36:31 -06:00
Richard Berger
f8af7edf92
Merge remote-tracking branch 'upstream/master' into python_refactoring
2017-05-06 16:00:22 -04:00
sjplimp
fbddfe2729
Merge pull request #455 from stanmoore1/kokkos_update
...
Updating Kokkos library to version 2.03.00
2017-05-04 11:23:39 -06:00
sjplimp
dcc5472cba
Merge pull request #452 from akohlmey/small-fixes-and-updates
...
Small fixes and updates
2017-05-04 11:23:23 -06:00
Steve Plimpton
addd87c0f7
new Section package and start doc pages and build scripts
2017-05-04 11:22:20 -06:00
Axel Kohlmeyer
b8cb80b219
rename files in GPU library from cg_cmm to lj_sdk
2017-04-26 19:46:10 -04:00
Axel Kohlmeyer
cd435c0c58
change references from cg_cmm to lj_sdk and from cmm to sdk
2017-04-26 19:44:25 -04:00
Stan Moore
cc6104aeaf
Merge branch 'master' into kokkos_update
2017-04-25 14:11:36 -06:00
Stan Moore
8910ec6e59
Updating Kokkos lib to 2.03.00
2017-04-25 13:48:51 -06:00
Axel Kohlmeyer
25e8ed63a2
whitespace cleanup in VMD plugin headers
2017-04-18 11:46:19 -04:00
Axel Kohlmeyer
dee3536144
update VMD molfile plugin headers and move them to lib/molfile (where they belong)
2017-04-18 11:42:31 -04:00
Axel Kohlmeyer
3cbf4f3b58
correct logic bug in else branch of the conditional
2017-04-14 11:57:53 -04:00
Axel Kohlmeyer
6c2dd7ebb1
pass the name of the python interpreter compatible with the python package to 'make install-python'
2017-04-14 11:44:36 -04:00
Richard Berger
9a027a01da
Add Python 3 compatibility to PYTHON package
2017-04-11 20:24:42 -04:00
Steve Plimpton
49dd9449b8
fix gcmc updates from Aidan, trimming of output for replica commands
2017-04-11 08:35:09 -06:00
Tim Mattox
17c8e695a4
Merge branch 'master' into USER-DPD_kokkos as of patch 10 Mar 2017
2017-03-10 21:37:52 -05:00
Giacomo Fiorin
5fe6206638
Update Colvars module to version 2017-03-10
2017-03-10 09:16:58 -05:00
Christian Negre
3298c37982
Makefile.lammps.gfortran for latte
2017-03-09 14:30:21 -07:00
Stan Moore
de27305227
Merge branch 'master' of https://github.com/lammps/lammps into USER-DPD_kokkos
2017-03-07 11:47:18 -07:00
Richard Berger
e261bef7bb
Spelling fixes in source files
2017-03-05 18:30:39 -05:00
Tim Mattox
641bf72f20
lib kokkos: Enable deterministic use of Random_XorShift*_Pool.
...
Add support for lock-free and deterministic use of Random_XorShift*_Pool
by giving state_idx selection and lock responsibility up to the
application. Done by an overload of get_state() to take sate_idx as
an argument that the appplication guarantees is concurrently unique
and within the range of num_states that the application passed to init().
In other words, this allows the RNG state to be associated with some
application specific index, rather than a runtime arbitrary thread ID,
and thus the application can control which work is performed using
which RNG in a deterministic manner, regardless of which thread
performs the work.
2017-03-01 11:52:33 -05:00
Tim Mattox
6e26358ec3
lib kokkos bugfix: on a CUDA host, the random state wasn't preserved.
...
Random_XorShift*_Pool<Kokkos::Cuda>::free_state() has two purposes:
1) update the state value kept in the pool
2) unlock the state
For a CUDA host thread, ONLY skip step 2, not both.
2017-03-01 11:46:26 -05:00
Christian Negre
2dcbc805ba
min latte partially fixed
2017-02-23 18:20:02 -07:00
Stan Moore
90e5ae965d
Add missing flags to Kokkos Makefile
2017-02-13 11:19:46 -07:00
Stan Moore
33af7ab248
Remove merge line
2017-02-13 10:59:22 -07:00
Stan Moore
8f9b2aca06
Removing unused files in Kokkos lib
2017-02-13 10:53:51 -07:00
Stan Moore
383da816c2
Updating Kokkos lib
2017-02-13 10:50:34 -07:00
Christian Negre
6d47cf350c
Makefile for latte_dev
2017-01-19 15:42:09 -07:00
sjplimp
d8bc590aaf
Merge pull request #327 from stanmoore1/kokkos_lib_update
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Updating Kokkos lib
2017-01-17 09:04:12 -07:00
Christian Negre
aaa7dca21b
Makefile.lammps.gfortran
2017-01-12 17:13:02 -07:00
Christian Negre
6bd17be454
Makefile.lammps.gfortran
2017-01-12 16:58:27 -07:00
Christian Negre
f51ddf8450
Makefile.lammps.gfortran
2017-01-12 13:50:02 -07:00
Stan Moore
7162cafdf5
Squelching output from Makefile
2017-01-10 14:46:30 -07:00
Stan Moore
ee9e7cfbd5
Fixing Kokkos CUDA Makefile issue
2017-01-10 13:22:36 -07:00
Stan Moore
7839c335da
Fixing compile error with Kokkos CUDA Makefiles
2017-01-10 13:05:00 -07:00
Christian Negre
1f6cfb1b31
Makefile.lammps.gfortran changed
2017-01-10 10:56:31 -07:00
Steve Plimpton
c31f1e9f22
add fix mscg command, example, lib
2017-01-09 13:36:40 -07:00
Stan Moore
9250a55923
Adding enable_lambda to KOKKOS_CUDA_OPTIONS
2017-01-09 12:24:30 -07:00
Stan Moore
a9f0b7d523
Updating Kokkos lib
2017-01-09 10:39:46 -07:00
Christian Negre
967cdd947e
cleanup
2017-01-05 15:37:01 -07:00
Giacomo Fiorin
b0263e87bb
Fix missing force with extended-Lagrangian mass
2016-12-27 17:16:32 -05:00
Giacomo Fiorin
f553e230db
Update Colvars library to version 2016-12-22
...
Significant code cleanup and several fixes (walls + extended Lagrangian)
New harmonicWalls bias to apply confining boundaries with time-dependent force
constant & integration
2016-12-27 13:17:34 -05:00
Giacomo Fiorin
6ab716164b
Fix seg fault for gyration collective variable
2016-12-27 13:17:02 -05:00
Giacomo Fiorin
7a45c72b97
Allow extended Lagrangian on non-scalar collective variables
2016-12-27 12:35:30 -05:00
Christian Negre
fe99fc287d
changes in fix_latte
2016-11-28 15:29:37 -07:00
Christian Negre
f040f15218
changes in latte makefile for lattelib and README
2016-11-14 16:11:12 -07:00
Christian Negre
f3d6ecf07b
changes for lattelib
2016-11-14 07:58:47 -07:00
Steve Plimpton
6f23f6535c
initial dummy version of fix_latte.cpp
2016-11-09 13:48:11 -07:00
Giacomo Fiorin
182141b850
Make SMP parallelism for Colvars optional
2016-10-24 17:13:34 -04:00
Giacomo Fiorin
e02505c8cc
Add ensemble-biased metadynamics (Fabrizio Marinelli, NIH)
2016-10-24 17:11:09 -04:00
Giacomo Fiorin
be2d155cef
Minor changes and fixes not relevant to LAMMPS
2016-10-24 17:10:52 -04:00
Giacomo Fiorin
c243093980
Fix wall forces and subtractAppliedForce for extended-Lagrangian ABF
2016-10-24 17:05:47 -04:00
Giacomo Fiorin
ad57a17f48
Add C-linkage wrapper for colvarscript (useful with ctypes)
2016-10-24 16:48:20 -04:00
Axel Kohlmeyer
019bc0ba0b
fix typos in Makefile.lammps for NetCDF support
2016-10-19 07:39:03 -04:00
Axel Kohlmeyer
27796b431e
avoid distracting error output
2016-10-18 15:32:20 -04:00
Axel Kohlmeyer
2b47fa6653
update Makefile.lammps and add README according to suggestions by lars pastewka
2016-10-18 15:05:30 -04:00
Axel Kohlmeyer
4502d3276b
updated Makefile.lammps for NetCDF support based on suggestions from lars pastewka
2016-10-18 14:45:06 -04:00
Axel Kohlmeyer
ecb03dd2df
import lammps-netcdf code as USER-NC-DUMP package
2016-10-11 23:03:18 -04:00
Axel Kohlmeyer
683689c808
revert to previous style conventions for size_t constants
2016-10-08 11:00:23 -04:00
Axel Kohlmeyer
e01e90eb96
workaround for double free issue when using USER-COLVARS with lammps code loaded as shared library into a standalone executable
2016-10-08 10:45:22 -04:00
sjplimp
54fc194e5b
Merge pull request #199 from akohlmey/small-changes
...
Collected small changes and bugfixes
2016-10-06 15:49:24 -06:00
A Bartok-Partay
8ea063378e
add NETCDF libs (as defined in QUIP) to the linking line if QUIP was built with NETCDF support
2016-10-06 12:16:25 +01:00
Giacomo Fiorin
8809a603fb
Colvars update: issue a warning that cannot be ignored regarding total forces
2016-10-05 18:26:21 -04:00
Giacomo Fiorin
969d3cf4b0
Colvars update: make ABF check that the colvar isn't using already subtractAppliedForce
2016-10-05 18:25:40 -04:00
Axel Kohlmeyer
03766dbda7
apply bugfix for MEAM provided by Wolfgang Verestek on lammps-users
...
this closes lammps/#188
2016-10-03 16:28:59 -04:00
Axel Kohlmeyer
a3e05a2bac
permission cleanup
2016-10-01 06:34:45 -04:00
Axel Kohlmeyer
6d200061ca
update colvars library to version 2016-09-30
2016-09-30 08:15:44 -04:00
Axel Kohlmeyer
5b2becd09b
Merge branch 'integration' into new-master
2016-09-29 10:37:09 -04:00
sjplimp
484122b8b6
sync with GH
...
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15592 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-09-16 19:21:34 +00:00
Axel Kohlmeyer
9637a5b530
colvars bugfix. updates colvars library to version 2016-09-14
2016-09-15 19:44:26 -04:00
Axel Kohlmeyer
14bed44743
ignore Makefile.lammps in lib tree
2016-09-13 09:36:48 -04:00
Axel Kohlmeyer
18cacb8e1d
ignore *.mod generated by fortran compilers
2016-09-13 09:36:19 -04:00
sjplimp
b190abea39
sync with GH
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git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15561 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-09-08 20:20:32 +00:00
sjplimp
07e55ef61e
Merge pull request #22 from akohlmey/colvars-update
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accumulated colvars library update and lib "make clean" improvement
2016-09-08 14:14:49 -06:00
Steve Plimpton
236ebf7fab
Kokkos lib update
2016-09-08 13:56:18 -06:00
Axel Kohlmeyer
3a74ccffa2
update colvars library to version 2016-09-03
...
(cherry picked from commit 4181f5ac9d
)
2016-09-06 21:28:59 -04:00
Axel Kohlmeyer
c8cfd53c1b
adjust makefiles in lib tree, so they don't return an error exit code on "make clean" targets.
...
(cherry picked from commit 4117218ca3
)
2016-09-06 21:28:55 -04:00
Axel Kohlmeyer
16607a0132
update colvars library to version 2016-08-19
...
(cherry picked from commit c67326be6d
)
2016-09-06 21:27:46 -04:00
Axel Kohlmeyer
3b476d914f
update colvars to version 2016-08-10
...
(cherry picked from commit eba3ad9abb
)
2016-09-06 21:27:46 -04:00
Axel Kohlmeyer
977b9e542f
update colvars to another set of changes from the upstream repo
...
(cherry picked from commit cb816f8cba
)
2016-09-06 21:27:45 -04:00
Axel Kohlmeyer
1b33d00785
update colvars makefile dependencies
...
(cherry picked from commit df99a85930
)
2016-09-06 21:27:45 -04:00
Axel Kohlmeyer
3d2e5d0a50
suppress compiler warning
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(cherry picked from commit 6f227e194e
)
2016-09-06 21:27:45 -04:00
Axel Kohlmeyer
ec2a6b9f0d
update colvars to version 2016-08-10
...
(cherry picked from commit f2ddf828e4
)
2016-09-06 21:27:41 -04:00
Axel Kohlmeyer
77620106a4
update colvars library to version 2016-08-05
...
(cherry picked from commit 459db2eb6b
)
# Conflicts:
# doc/src/PDF/colvars-refman-lammps.pdf
2016-09-06 21:26:50 -04:00
stamoor
39be4185c4
Updating Kokkos lib
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git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15556 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-09-06 23:06:32 +00:00
stamoor
1ad033ec0c
Updating Kokkos lib
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git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15555 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-09-06 23:02:50 +00:00
sjplimp
083ff54c0c
small bug fixes
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git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15527 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-08-31 20:26:15 +00:00
Steve Plimpton
4051aedf2c
Merge branch 'small' into integration
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Conflicts:
src/compute_omega_chunk.cpp
2016-08-31 13:58:12 -06:00
Steve Plimpton
ec8b9e21db
sync with SVN
2016-08-31 13:28:26 -06:00
stamoor
dbaaf4dbbd
Removing aggressive_vectorization flag due to safety issue
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git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15521 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-08-30 17:52:49 +00:00
Axel Kohlmeyer
493613b495
avoid NaNs in MEAM
2016-08-30 06:54:36 -04:00
Steve Plimpton
2beecd1e73
removal of doc/html/_sources and minor sync with SVN
2016-08-26 11:34:37 -06:00
stamoor
cc4b2dd6ed
Changing default
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git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15503 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-08-26 15:50:25 +00:00
Steve Plimpton
abc5a32c8a
gpu lib sync
2016-08-23 15:30:01 -06:00
sjplimp
efaa84a4ea
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15430 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-08-03 19:32:03 +00:00
sjplimp
b8bf3ae5b0
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15391 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-07-29 14:24:21 +00:00