forked from lijiext/lammps
simplify create/delete_atoms/bonds
This commit is contained in:
parent
ef190962b8
commit
fc216edf10
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@ -20,6 +20,7 @@
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#include "create_bonds.h"
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#include <mpi.h>
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#include <cstring>
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#include <string>
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#include "atom.h"
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#include "domain.h"
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#include "force.h"
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@ -30,6 +31,8 @@
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#include "group.h"
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#include "special.h"
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#include "error.h"
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#include "utils.h"
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#include "fmt/format.h"
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using namespace LAMMPS_NS;
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@ -318,19 +321,9 @@ void CreateBonds::many()
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bigint nadd_bonds = atom->nbonds - nbonds_previous;
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if (comm->me == 0) {
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if (screen) {
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fprintf(screen,"Added " BIGINT_FORMAT
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" bonds, new total = " BIGINT_FORMAT "\n",
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nadd_bonds,atom->nbonds);
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}
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if (logfile) {
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fprintf(logfile,"Added " BIGINT_FORMAT
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" bonds, new total = " BIGINT_FORMAT "\n",
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nadd_bonds,atom->nbonds);
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}
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}
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if (comm->me == 0)
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utils::logmesg(lmp,fmt::format("Added {} bonds, new total = {}\n",
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nadd_bonds,atom->nbonds));
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}
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/* ---------------------------------------------------------------------- */
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@ -34,8 +34,11 @@
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#include "random_mars.h"
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#include "memory.h"
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#include "error.h"
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#include "utils.h"
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#include "fmt/format.h"
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#include <map>
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#include <string>
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using namespace LAMMPS_NS;
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@ -176,53 +179,23 @@ void DeleteAtoms::command(int narg, char **arg)
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bigint ndelete_impropers = nimpropers_previous - atom->nimpropers;
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if (comm->me == 0) {
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if (screen) {
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fprintf(screen,"Deleted " BIGINT_FORMAT
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" atoms, new total = " BIGINT_FORMAT "\n",
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ndelete,atom->natoms);
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if (bond_flag || mol_flag) {
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if (nbonds_previous)
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fprintf(screen,"Deleted " BIGINT_FORMAT
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" bonds, new total = " BIGINT_FORMAT "\n",
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ndelete_bonds,atom->nbonds);
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if (nangles_previous)
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fprintf(screen,"Deleted " BIGINT_FORMAT
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" angles, new total = " BIGINT_FORMAT "\n",
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ndelete_angles,atom->nangles);
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if (ndihedrals_previous)
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fprintf(screen,"Deleted " BIGINT_FORMAT
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" dihedrals, new total = " BIGINT_FORMAT "\n",
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ndelete_dihedrals,atom->ndihedrals);
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if (nimpropers_previous)
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fprintf(screen,"Deleted " BIGINT_FORMAT
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" impropers, new total = " BIGINT_FORMAT "\n",
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ndelete_impropers,atom->nimpropers);
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}
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}
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if (logfile) {
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fprintf(logfile,"Deleted " BIGINT_FORMAT
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" atoms, new total = " BIGINT_FORMAT "\n",
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ndelete,atom->natoms);
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if (bond_flag || mol_flag) {
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if (nbonds_previous)
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fprintf(logfile,"Deleted " BIGINT_FORMAT
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" bonds, new total = " BIGINT_FORMAT "\n",
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ndelete_bonds,atom->nbonds);
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if (nangles_previous)
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fprintf(logfile,"Deleted " BIGINT_FORMAT
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" angles, new total = " BIGINT_FORMAT "\n",
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ndelete_angles,atom->nangles);
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if (ndihedrals_previous)
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fprintf(logfile,"Deleted " BIGINT_FORMAT
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" dihedrals, new total = " BIGINT_FORMAT "\n",
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ndelete_dihedrals,atom->ndihedrals);
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if (nimpropers_previous)
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fprintf(logfile,"Deleted " BIGINT_FORMAT
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" impropers, new total = " BIGINT_FORMAT "\n",
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ndelete_impropers,atom->nimpropers);
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}
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std::string mesg = fmt::format("Deleted {} atoms, new total = {}\n",
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ndelete,atom->natoms);
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if (bond_flag || mol_flag) {
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if (nbonds_previous)
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mesg += fmt::format("Deleted {} bonds, new total = {}\n",
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ndelete_bonds,atom->nbonds);
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if (nangles_previous)
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mesg += fmt::format("Deleted {} angles, new total = {}\n",
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ndelete_angles,atom->nangles);
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if (ndihedrals_previous)
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mesg += fmt::format("Deleted {} dihedrals, new total = {}\n",
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ndelete_dihedrals,atom->ndihedrals);
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if (nimpropers_previous)
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mesg += fmt::format("Deleted {} impropers, new total = {}\n",
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ndelete_impropers,atom->nimpropers);
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}
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utils::logmesg(lmp,mesg);
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}
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}
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@ -15,6 +15,7 @@
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#include <mpi.h>
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#include <cstdlib>
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#include <cstring>
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#include <string>
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#include "atom.h"
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#include "atom_vec.h"
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#include "domain.h"
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@ -23,6 +24,8 @@
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#include "group.h"
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#include "special.h"
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#include "error.h"
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#include "utils.h"
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#include "fmt/format.h"
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using namespace LAMMPS_NS;
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@ -535,50 +538,25 @@ void DeleteBonds::command(int narg, char **arg)
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}
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if (comm->me == 0) {
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if (atom->avec->bonds_allow) {
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if (screen) fprintf(screen,
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" " BIGINT_FORMAT " total bonds, " BIGINT_FORMAT
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" turned on, " BIGINT_FORMAT " turned off\n",
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atom->nbonds,bond_on,bond_off);
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if (logfile) fprintf(logfile,
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" " BIGINT_FORMAT " total bonds, " BIGINT_FORMAT
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" turned on, " BIGINT_FORMAT " turned off\n",
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atom->nbonds,bond_on,bond_off);
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}
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if (atom->avec->angles_allow) {
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if (screen) fprintf(screen,
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" " BIGINT_FORMAT " total angles, " BIGINT_FORMAT
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" turned on, " BIGINT_FORMAT " turned off\n",
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atom->nangles,angle_on,angle_off);
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if (logfile) fprintf(logfile,
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" " BIGINT_FORMAT " total angles, " BIGINT_FORMAT
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" turned on, " BIGINT_FORMAT " turned off\n",
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atom->nangles,angle_on,angle_off);
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}
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if (atom->avec->dihedrals_allow) {
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if (screen) fprintf(screen,
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" " BIGINT_FORMAT " total dihedrals, "
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BIGINT_FORMAT " turned on, " BIGINT_FORMAT
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" turned off\n",
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atom->ndihedrals,dihedral_on,dihedral_off);
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if (logfile) fprintf(logfile,
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" " BIGINT_FORMAT " total dihedrals, "
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BIGINT_FORMAT " turned on, " BIGINT_FORMAT
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" turned off\n",
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atom->ndihedrals,dihedral_on,dihedral_off);
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}
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if (atom->avec->impropers_allow) {
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if (screen) fprintf(screen,
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" " BIGINT_FORMAT " total impropers, "
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BIGINT_FORMAT " turned on, " BIGINT_FORMAT
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" turned off\n",
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atom->nimpropers,improper_on,improper_off);
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if (logfile) fprintf(logfile,
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" " BIGINT_FORMAT " total impropers, "
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BIGINT_FORMAT " turned on, " BIGINT_FORMAT
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" turned off\n",
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atom->nimpropers,improper_on,improper_off);
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}
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if (atom->avec->bonds_allow)
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utils::logmesg(lmp,fmt::format(" {} total bonds, "
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"{} turned on, {} turned off\n",
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atom->nbonds,bond_on,bond_off));
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if (atom->avec->angles_allow)
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utils::logmesg(lmp,fmt::format(" {} total angles, "
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"{} turned on, {} turned off\n",
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atom->nangles,angle_on,angle_off));
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if (atom->avec->dihedrals_allow)
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utils::logmesg(lmp,fmt::format(" {} total dihedrals, "
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"{} turned on, {} turned off\n",
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atom->ndihedrals,dihedral_on,dihedral_off));
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if (atom->avec->impropers_allow)
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utils::logmesg(lmp,fmt::format(" {} total impropers, "
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"{} turned on, {} turned off\n",
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atom->nimpropers,improper_on,improper_off));
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}
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// re-compute special list if requested
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