forked from lijiext/lammps
restore missing links
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Axel Kohlmeyer
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@ -228,3 +228,4 @@ instructions. See the :doc:`Packages\_details <Packages_details>` doc
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page for more info on specific USER packages.
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.. _openkim: https://openkim.org
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.. _lws: http://lammps.sandia.gov
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@ -5,15 +5,9 @@ You can download a current LAMMPS tarball from the `download page <download_>`_
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of the `LAMMPS website <lws_>`_.
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.. _download: http://lammps.sandia.gov/download.html
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.. _bug: http://lammps.sandia.gov/bug.html
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.. _older: http://lammps.sandia.gov/tars
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.. _lws: http://lammps.sandia.gov
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You have two choices of tarballs, either the most recent stable
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@ -11,7 +11,7 @@ University:
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* Richard Berger, richard.berger at temple.edu
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.. _sjp: http://www.cs.sandia.gov/~sjplimp
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.. _lws: http://lammps.sandia.gov
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Past developers include Paul Crozier and Mark Stevens, both at Sandia,
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@ -5,6 +5,8 @@ The `LAMMPS website <lws_>`_ has a variety of additional info about
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LAMMPS, beyond what is in this manual. Some of the other pages in
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this Intr are included in this list.
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.. _lws: http://lammps.sandia.gov
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* `Brief intro and recently added significant features <lws_>`_
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* `List of features <http://lammps.sandia.gov/features.html>`_
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* `List of non-features <http://lammps.sandia.gov/non_features.html>`_
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@ -22,20 +22,16 @@ It includes links to an on-line version of this manual, a `mailing list <http://
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questions, and a `GitHub site <https://github.com/lammps/lammps>`_ where
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all LAMMPS development is coordinated.
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----------
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The content for this manual is part of the LAMMPS distribution. You
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can build a local copy of the Manual as HTML pages or a PDF file, by
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following the steps on the :doc:`Manual build <Manual_build>` doc page.
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There is also a `Developer.pdf <Developer.pdf>`_ document which gives
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a brief description of the basic code structure of LAMMPS.
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----------
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Once you are familiar with LAMMPS, you may want to bookmark :doc:`this page <Commands>` since it gives quick access to a doc page for
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every LAMMPS command.
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@ -69,6 +69,8 @@ unusual event).
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`developers <http://lammps.sandia.gov/authors.html>`_ with info about
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your package and we will post it there.
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.. _lws: http://lammps.sandia.gov
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The previous sections of this doc page describe how to add new "style"
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files of various kinds to LAMMPS. Packages are simply collections of
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one or more new class files which are invoked as a new style within a
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@ -24,6 +24,8 @@ page gives those details.
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pair, bond, angle, etc correspond to commands with the same style name
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as contained in the file name.
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.. _lc: Commands_all.html
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+------------------------------+--------------------------------+--------------------------------+------------------------------+--------------------------------+----------------------------------+
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| :ref:`ASPHERE <PKG-ASPHERE>` | :ref:`BODY <PKG-BODY>` | :ref:`CLASS2 <PKG-CLASS2>` | :ref:`COLLOID <PKG-COLLOID>` | :ref:`COMPRESS <PKG-COMPRESS>` | :ref:`CORESHELL <PKG-CORESHELL>` |
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+------------------------------+--------------------------------+--------------------------------+------------------------------+--------------------------------+----------------------------------+
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@ -2418,21 +2420,10 @@ The expressions and their use are discussed in the following papers
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which discuss the `QuickFF <quickff_>`_ methodology.
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.. _vanduyfhuys2015: http://dx.doi.org/10.1002/jcc.23877
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.. _vanduyfhuys2018: http://dx.doi.org/10.1002/jcc.25173
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.. _quickff: http://molmod.github.io/QuickFF
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.. _yaff: https://github.com/molmod/yaff
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**Author:** Steven Vandenbrande.
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**Supporting info:**
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@ -75,3 +75,5 @@ Phi), you should first measure single node performance. Then you can
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estimate parallel performance for multi-node runs using the same logic
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as for all-MPI mode, except that now you will typically need many more
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atoms/node to achieve good scalability.
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.. _lws: http://lammps.sandia.gov
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@ -27,7 +27,6 @@ standard or user packages:
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| :doc:`OPT Package <Speed_opt>` | generic CPU optimizations |
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+-----------------------------------------+-------------------------------------------------------+
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.. toctree::
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:maxdepth: 1
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:hidden:
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@ -38,6 +37,8 @@ standard or user packages:
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Speed_omp
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Speed_opt
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.. _lc: Commands_all.html
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Inverting this list, LAMMPS currently has acceleration support for
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three kinds of hardware, via the listed packages:
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@ -188,3 +189,4 @@ The individual accelerator package doc pages explain:
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* speed-ups to expect
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* guidelines for best performance
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* restrictions
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@ -14,10 +14,8 @@ The last link for `Pizza.py <pizza_>`_ is a Python-based tool developed at
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Sandia which provides tools for doing setup, analysis, plotting, and
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visualization for LAMMPS simulations.
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.. _lws: http://lammps.sandia.gov
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.. _pizza: http://pizza.sandia.gov
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.. _python: http://www.python.org
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