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git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14998 f3b2605a-c512-4ea7-a41b-209d697bcdaa

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sjplimp 2016-05-10 20:08:22 +00:00
parent 532b5e9787
commit f12fdf7e17
3 changed files with 42 additions and 39 deletions
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40
doc/html/Section_commands.html
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@ -769,12 +769,12 @@ g = GPU, i = USER-INTEL, k = KOKKOS, o = USER-OMP, t = OPT.</p>
<a class="reference internal" href="Section_start.html#start-3"><span class="std std-ref">LAMMPS is built with the appropriate package</span></a>.</p>
<table border="1" class="docutils">
<colgroup>
<col width="15%" />
<col width="15%" />
<col width="15%" />
<col width="20%" />
<col width="14%" />
<col width="22%" />
<col width="14%" />
<col width="15%" />
<col width="15%" />
</colgroup>
<tbody valign="top">
<tr class="row-odd"><td><a class="reference internal" href="fix_adapt_fep.html"><span class="doc">adapt/fep</span></a></td>
@ -802,43 +802,43 @@ g = GPU, i = USER-INTEL, k = KOKKOS, o = USER-OMP, t = OPT.</p>
<td><a class="reference internal" href="fix_lb_rigid_pc_sphere.html"><span class="doc">lb/rigid/pc/sphere</span></a></td>
<td><a class="reference internal" href="fix_lb_viscous.html"><span class="doc">lb/viscous</span></a></td>
<td><a class="reference internal" href="fix_meso.html"><span class="doc">meso</span></a></td>
<td><a class="reference internal" href="fix_manifoldforce.html"><span class="doc">manifoldforce</span></a></td>
<td><a class="reference internal" href="fix_meso_stationary.html"><span class="doc">meso/stationary</span></a></td>
<td><a class="reference internal" href="fix_nh_eff.html"><span class="doc">nph/eff</span></a></td>
</tr>
<tr class="row-odd"><td><a class="reference internal" href="fix_nh_eff.html"><span class="doc">npt/eff</span></a></td>
<tr class="row-odd"><td><a class="reference internal" href="fix_nve_manifold_rattle.html"><span class="doc">nve/manifold/rattle</span></a></td>
<td><a class="reference internal" href="fix_nvt_manifold_rattle.html"><span class="doc">nvt/manifold/rattle</span></a></td>
<td><a class="reference internal" href="fix_nh_eff.html"><span class="doc">nph/eff</span></a></td>
<td><a class="reference internal" href="fix_nh_eff.html"><span class="doc">npt/eff</span></a></td>
<td><a class="reference internal" href="fix_nve_eff.html"><span class="doc">nve/eff</span></a></td>
<td><a class="reference internal" href="fix_nh_eff.html"><span class="doc">nvt/eff</span></a></td>
<td><a class="reference internal" href="fix_nvt_sllod_eff.html"><span class="doc">nvt/sllod/eff</span></a></td>
</tr>
<tr class="row-even"><td><a class="reference internal" href="fix_nvt_sllod_eff.html"><span class="doc">nvt/sllod/eff</span></a></td>
<td><a class="reference internal" href="fix_phonon.html"><span class="doc">phonon</span></a></td>
<td><a class="reference internal" href="fix_pimd.html"><span class="doc">pimd</span></a></td>
</tr>
<tr class="row-even"><td><a class="reference internal" href="fix_qbmsst.html"><span class="doc">qbmsst</span></a></td>
<td><a class="reference internal" href="fix_qbmsst.html"><span class="doc">qbmsst</span></a></td>
<td><a class="reference internal" href="fix_qeq_reax.html"><span class="doc">qeq/reax</span></a></td>
<td><a class="reference internal" href="fix_qmmm.html"><span class="doc">qmmm</span></a></td>
<td><a class="reference internal" href="fix_qtb.html"><span class="doc">qtb</span></a></td>
</tr>
<tr class="row-odd"><td><a class="reference internal" href="fix_qtb.html"><span class="doc">qtb</span></a></td>
<td><a class="reference internal" href="fix_reax_bonds.html"><span class="doc">reax/c/bonds</span></a></td>
<td><a class="reference internal" href="fix_reaxc_species.html"><span class="doc">reax/c/species</span></a></td>
</tr>
<tr class="row-odd"><td><a class="reference internal" href="fix_saed_vtk.html"><span class="doc">saed/vtk</span></a></td>
<td><a class="reference internal" href="fix_saed_vtk.html"><span class="doc">saed/vtk</span></a></td>
<td><a class="reference internal" href="fix_shardlow.html"><span class="doc">shardlow</span></a></td>
<td><a class="reference internal" href="fix_smd.html"><span class="doc">smd</span></a></td>
<td><a class="reference internal" href="fix_smd_adjust_dt.html"><span class="doc">smd/adjust/dt</span></a></td>
</tr>
<tr class="row-even"><td><a class="reference internal" href="fix_smd_adjust_dt.html"><span class="doc">smd/adjust/dt</span></a></td>
<td><a class="reference internal" href="fix_smd_integrate_tlsph.html"><span class="doc">smd/integrate/tlsph</span></a></td>
<td><a class="reference internal" href="fix_smd_integrate_ulsph.html"><span class="doc">smd/integrate/ulsph</span></a></td>
</tr>
<tr class="row-even"><td><a class="reference internal" href="fix_smd_move_triangulated_surface.html"><span class="doc">smd/move/triangulated/surface</span></a></td>
<td><a class="reference internal" href="fix_smd_move_triangulated_surface.html"><span class="doc">smd/move/triangulated/surface</span></a></td>
<td><a class="reference internal" href="fix_smd_setvel.html"><span class="doc">smd/setvel</span></a></td>
<td><a class="reference internal" href="fix_smd_tlsph_reference_configuration.html"><span class="doc">smd/tlsph/reference/configuration</span></a></td>
<td><a class="reference internal" href="fix_smd_wall_surface.html"><span class="doc">smd/wall/surface</span></a></td>
</tr>
<tr class="row-odd"><td><a class="reference internal" href="fix_smd_wall_surface.html"><span class="doc">smd/wall/surface</span></a></td>
<td><a class="reference internal" href="fix_temp_rescale_eff.html"><span class="doc">temp/rescale/eff</span></a></td>
<td><a class="reference internal" href="fix_ti_rs.html"><span class="doc">ti/rs</span></a></td>
</tr>
<tr class="row-odd"><td><a class="reference internal" href="fix_ti_spring.html"><span class="doc">ti/spring</span></a></td>
<td><a class="reference internal" href="fix_ti_spring.html"><span class="doc">ti/spring</span></a></td>
<td><a class="reference internal" href="fix_ttm.html"><span class="doc">ttm/mod</span></a></td>
<td>&nbsp;</td>
<td>&nbsp;</td>
<td>&nbsp;</td>
<td>&nbsp;</td>
</tr>
</tbody>
</table>

38
doc/html/_sources/Section_commands.txt
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@ -492,25 +492,25 @@ g = GPU, i = USER-INTEL, k = KOKKOS, o = USER-OMP, t = OPT.
These are additional fix styles in USER packages, which can be used if
:ref:`LAMMPS is built with the appropriate package <start_3>`.
+--------------------------------------------------------------------------+-----------------------------------------------------+----------------------------------------------------------------------------------+----------------------------------------------------+------------------------------------------------------+------------------------------------------------------+
| :doc:`adapt/fep <fix_adapt_fep>` | :doc:`addtorque <fix_addtorque>` | :doc:`atc <fix_atc>` | :doc:`ave/correlate/long <fix_ave_correlate_long>` | :doc:`ave/spatial/sphere <fix_ave_spatial_sphere>` | :doc:`colvars <fix_colvars>` |
+--------------------------------------------------------------------------+-----------------------------------------------------+----------------------------------------------------------------------------------+----------------------------------------------------+------------------------------------------------------+------------------------------------------------------+
| :doc:`drude <fix_drude>` | :doc:`drude/transform/direct <fix_drude_transform>` | :doc:`drude/transform/reverse <fix_drude_transform>` | :doc:`eos/cv <fix_eos_cv>` | :doc:`eos/table <fix_eos_table>` | :doc:`gle <fix_gle>` |
+--------------------------------------------------------------------------+-----------------------------------------------------+----------------------------------------------------------------------------------+----------------------------------------------------+------------------------------------------------------+------------------------------------------------------+
| :doc:`imd <fix_imd>` | :doc:`ipi <fix_ipi>` | :doc:`langevin/drude <fix_langevin_drude>` | :doc:`langevin/eff <fix_langevin_eff>` | :doc:`lb/fluid <fix_lb_fluid>` | :doc:`lb/momentum <fix_lb_momentum>` |
+--------------------------------------------------------------------------+-----------------------------------------------------+----------------------------------------------------------------------------------+----------------------------------------------------+------------------------------------------------------+------------------------------------------------------+
| :doc:`lb/pc <fix_lb_pc>` | :doc:`lb/rigid/pc/sphere <fix_lb_rigid_pc_sphere>` | :doc:`lb/viscous <fix_lb_viscous>` | :doc:`meso <fix_meso>` | :doc:`meso/stationary <fix_meso_stationary>` | :doc:`nph/eff <fix_nh_eff>` |
+--------------------------------------------------------------------------+-----------------------------------------------------+----------------------------------------------------------------------------------+----------------------------------------------------+------------------------------------------------------+------------------------------------------------------+
| :doc:`npt/eff <fix_nh_eff>` | :doc:`nve/eff <fix_nve_eff>` | :doc:`nvt/eff <fix_nh_eff>` | :doc:`nvt/sllod/eff <fix_nvt_sllod_eff>` | :doc:`phonon <fix_phonon>` | :doc:`pimd <fix_pimd>` |
+--------------------------------------------------------------------------+-----------------------------------------------------+----------------------------------------------------------------------------------+----------------------------------------------------+------------------------------------------------------+------------------------------------------------------+
| :doc:`qbmsst <fix_qbmsst>` | :doc:`qeq/reax <fix_qeq_reax>` | :doc:`qmmm <fix_qmmm>` | :doc:`qtb <fix_qtb>` | :doc:`reax/c/bonds <fix_reax_bonds>` | :doc:`reax/c/species <fix_reaxc_species>` |
+--------------------------------------------------------------------------+-----------------------------------------------------+----------------------------------------------------------------------------------+----------------------------------------------------+------------------------------------------------------+------------------------------------------------------+
| :doc:`saed/vtk <fix_saed_vtk>` | :doc:`shardlow <fix_shardlow>` | :doc:`smd <fix_smd>` | :doc:`smd/adjust/dt <fix_smd_adjust_dt>` | :doc:`smd/integrate/tlsph <fix_smd_integrate_tlsph>` | :doc:`smd/integrate/ulsph <fix_smd_integrate_ulsph>` |
+--------------------------------------------------------------------------+-----------------------------------------------------+----------------------------------------------------------------------------------+----------------------------------------------------+------------------------------------------------------+------------------------------------------------------+
| :doc:`smd/move/triangulated/surface <fix_smd_move_triangulated_surface>` | :doc:`smd/setvel <fix_smd_setvel>` | :doc:`smd/tlsph/reference/configuration <fix_smd_tlsph_reference_configuration>` | :doc:`smd/wall/surface <fix_smd_wall_surface>` | :doc:`temp/rescale/eff <fix_temp_rescale_eff>` | :doc:`ti/rs <fix_ti_rs>` |
+--------------------------------------------------------------------------+-----------------------------------------------------+----------------------------------------------------------------------------------+----------------------------------------------------+------------------------------------------------------+------------------------------------------------------+
| :doc:`ti/spring <fix_ti_spring>` | :doc:`ttm/mod <fix_ttm>` | | | | |
+--------------------------------------------------------------------------+-----------------------------------------------------+----------------------------------------------------------------------------------+----------------------------------------------------+------------------------------------------------------+------------------------------------------------------+
+------------------------------------------------------+------------------------------------------------------+------------------------------------------------------+--------------------------------------------------------------------------+----------------------------------------------------+----------------------------------------------------------------------------------+
| :doc:`adapt/fep <fix_adapt_fep>` | :doc:`addtorque <fix_addtorque>` | :doc:`atc <fix_atc>` | :doc:`ave/correlate/long <fix_ave_correlate_long>` | :doc:`ave/spatial/sphere <fix_ave_spatial_sphere>` | :doc:`colvars <fix_colvars>` |
+------------------------------------------------------+------------------------------------------------------+------------------------------------------------------+--------------------------------------------------------------------------+----------------------------------------------------+----------------------------------------------------------------------------------+
| :doc:`drude <fix_drude>` | :doc:`drude/transform/direct <fix_drude_transform>` | :doc:`drude/transform/reverse <fix_drude_transform>` | :doc:`eos/cv <fix_eos_cv>` | :doc:`eos/table <fix_eos_table>` | :doc:`gle <fix_gle>` |
+------------------------------------------------------+------------------------------------------------------+------------------------------------------------------+--------------------------------------------------------------------------+----------------------------------------------------+----------------------------------------------------------------------------------+
| :doc:`imd <fix_imd>` | :doc:`ipi <fix_ipi>` | :doc:`langevin/drude <fix_langevin_drude>` | :doc:`langevin/eff <fix_langevin_eff>` | :doc:`lb/fluid <fix_lb_fluid>` | :doc:`lb/momentum <fix_lb_momentum>` |
+------------------------------------------------------+------------------------------------------------------+------------------------------------------------------+--------------------------------------------------------------------------+----------------------------------------------------+----------------------------------------------------------------------------------+
| :doc:`lb/pc <fix_lb_pc>` | :doc:`lb/rigid/pc/sphere <fix_lb_rigid_pc_sphere>` | :doc:`lb/viscous <fix_lb_viscous>` | :doc:`meso <fix_meso>` | :doc:`manifoldforce <fix_manifoldforce>` | :doc:`meso/stationary <fix_meso_stationary>` |
+------------------------------------------------------+------------------------------------------------------+------------------------------------------------------+--------------------------------------------------------------------------+----------------------------------------------------+----------------------------------------------------------------------------------+
| :doc:`nve/manifold/rattle <fix_nve_manifold_rattle>` | :doc:`nvt/manifold/rattle <fix_nvt_manifold_rattle>` | :doc:`nph/eff <fix_nh_eff>` | :doc:`npt/eff <fix_nh_eff>` | :doc:`nve/eff <fix_nve_eff>` | :doc:`nvt/eff <fix_nh_eff>` |
+------------------------------------------------------+------------------------------------------------------+------------------------------------------------------+--------------------------------------------------------------------------+----------------------------------------------------+----------------------------------------------------------------------------------+
| :doc:`nvt/sllod/eff <fix_nvt_sllod_eff>` | :doc:`phonon <fix_phonon>` | :doc:`pimd <fix_pimd>` | :doc:`qbmsst <fix_qbmsst>` | :doc:`qeq/reax <fix_qeq_reax>` | :doc:`qmmm <fix_qmmm>` |
+------------------------------------------------------+------------------------------------------------------+------------------------------------------------------+--------------------------------------------------------------------------+----------------------------------------------------+----------------------------------------------------------------------------------+
| :doc:`qtb <fix_qtb>` | :doc:`reax/c/bonds <fix_reax_bonds>` | :doc:`reax/c/species <fix_reaxc_species>` | :doc:`saed/vtk <fix_saed_vtk>` | :doc:`shardlow <fix_shardlow>` | :doc:`smd <fix_smd>` |
+------------------------------------------------------+------------------------------------------------------+------------------------------------------------------+--------------------------------------------------------------------------+----------------------------------------------------+----------------------------------------------------------------------------------+
| :doc:`smd/adjust/dt <fix_smd_adjust_dt>` | :doc:`smd/integrate/tlsph <fix_smd_integrate_tlsph>` | :doc:`smd/integrate/ulsph <fix_smd_integrate_ulsph>` | :doc:`smd/move/triangulated/surface <fix_smd_move_triangulated_surface>` | :doc:`smd/setvel <fix_smd_setvel>` | :doc:`smd/tlsph/reference/configuration <fix_smd_tlsph_reference_configuration>` |
+------------------------------------------------------+------------------------------------------------------+------------------------------------------------------+--------------------------------------------------------------------------+----------------------------------------------------+----------------------------------------------------------------------------------+
| :doc:`smd/wall/surface <fix_smd_wall_surface>` | :doc:`temp/rescale/eff <fix_temp_rescale_eff>` | :doc:`ti/rs <fix_ti_rs>` | :doc:`ti/spring <fix_ti_spring>` | :doc:`ttm/mod <fix_ttm>` | |
+------------------------------------------------------+------------------------------------------------------+------------------------------------------------------+--------------------------------------------------------------------------+----------------------------------------------------+----------------------------------------------------------------------------------+
----------

3
doc/src/Section_commands.txt
View File

@ -630,7 +630,10 @@ package"_Section_start.html#start_3.
"lb/rigid/pc/sphere"_fix_lb_rigid_pc_sphere.html,
"lb/viscous"_fix_lb_viscous.html,
"meso"_fix_meso.html,
"manifoldforce"_fix_manifoldforce.html,
"meso/stationary"_fix_meso_stationary.html,
"nve/manifold/rattle"_fix_nve_manifold_rattle.html,
"nvt/manifold/rattle"_fix_nvt_manifold_rattle.html,
"nph/eff"_fix_nh_eff.html,
"npt/eff"_fix_nh_eff.html,
"nve/eff"_fix_nve_eff.html,