forked from lijiext/lammps
Added flag to make only fix_nphug use constant eta_mass
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@6943 f3b2605a-c512-4ea7-a41b-209d697bcdaa
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@ -36,6 +36,10 @@ FixNPHug::FixNPHug(LAMMPS *lmp, int narg, char **arg) :
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FixNH(lmp, narg, arg)
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{
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// Prevent eta_mass from being updated every timestep
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eta_mass_flag = 0;
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// extend vector of base-class computes
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size_vector += 3;
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@ -72,6 +72,7 @@ FixNH::FixNH(LAMMPS *lmp, int narg, char **arg) : Fix(lmp, narg, arg)
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mtk_flag = 1;
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deviatoric_flag = 0;
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nreset_h0 = 0;
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eta_mass_flag = 1;
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// turn on tilt factor scaling, whenever applicable
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@ -731,6 +732,11 @@ void FixNH::initial_integrate(int vflag)
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if (tstat_flag) {
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compute_temp_target();
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if (eta_mass_flag) {
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eta_mass[0] = tdof * boltz * t_target / (t_freq*t_freq);
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for (int ich = 1; ich < mtchain; ich++)
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eta_mass[ich] = boltz * t_target / (t_freq*t_freq);
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}
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nhc_temp_integrate();
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}
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@ -827,6 +833,11 @@ void FixNH::initial_integrate_respa(int vflag, int ilevel, int iloop)
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if (tstat_flag) {
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compute_temp_target();
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if (eta_mass_flag) {
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eta_mass[0] = tdof * boltz * t_target / (t_freq*t_freq);
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for (int ich = 1; ich < mtchain; ich++)
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eta_mass[ich] = boltz * t_target / (t_freq*t_freq);
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}
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nhc_temp_integrate();
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}
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@ -1570,48 +1581,11 @@ void FixNH::reset_dt()
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if (strstr(update->integrate_style,"respa"))
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dto = 0.5*step_respa[0];
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p_freq_max = 0.0;
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if (pstat_flag) {
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p_freq_max = MAX(p_freq[0],p_freq[1]);
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p_freq_max = MAX(p_freq_max,p_freq[2]);
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if (pstyle == TRICLINIC) {
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p_freq_max = MAX(p_freq_max,p_freq[3]);
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p_freq_max = MAX(p_freq_max,p_freq[4]);
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p_freq_max = MAX(p_freq_max,p_freq[5]);
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}
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double kt = boltz * t_target;
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double nkt = atom->natoms * kt;
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for (int i = 0; i < 3; i++)
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if (p_flag[i])
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omega_mass[i] = nkt/(p_freq[i]*p_freq[i]);
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if (pstyle == TRICLINIC) {
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for (int i = 3; i < 6; i++)
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if (p_flag[i]) omega_mass[i] = nkt/(p_freq[i]*p_freq[i]);
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}
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// masses and initial forces on barostat thermostat variables
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if (mpchain) {
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etap_mass[0] = boltz * t_target / (p_freq_max*p_freq_max);
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for (int ich = 1; ich < mpchain; ich++)
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etap_mass[ich] = boltz * t_target / (p_freq_max*p_freq_max);
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for (int ich = 1; ich < mpchain; ich++)
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etap_dotdot[ich] =
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(etap_mass[ich-1]*etap_dot[ich-1]*etap_dot[ich-1] -
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boltz * t_target) / etap_mass[ich];
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}
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if (pstat_flag)
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pdrag_factor = 1.0 - (update->dt * p_freq_max * drag / nc_pchain);
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}
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if (tstat_flag)
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eta_mass[0] = tdof * boltz * t_target / (t_freq*t_freq);
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for (int ich = 1; ich < mtchain; ich++)
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eta_mass[ich] = boltz * t_target / (t_freq*t_freq);
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tdrag_factor = 1.0 - (update->dt * t_freq * drag / nc_tchain);
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}
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@ -104,6 +104,8 @@ class FixNH : public Fix {
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double mtk_term1,mtk_term2; // Martyna-Tobias-Klein corrections
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int eta_mass_flag; // 1 if eta_mass updated, 0 if not.
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int scaleyz; // 1 if yz scaled with lz
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int scalexz; // 1 if xz scaled with lz
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int scalexy; // 1 if xy scaled with ly
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