got fix_momentum_kokkos to compile

there are likely still some compile
errors for Kokkos+CUDA...
This commit is contained in:
Dan Ibanez 2016-12-19 13:08:09 -07:00
parent a1b441a71f
commit ca30c1ec88
5 changed files with 27 additions and 13 deletions

View File

@ -15,6 +15,7 @@
#include <string.h>
#include "fix_momentum_kokkos.h"
#include "atom_kokkos.h"
#include "atom_masks.h"
#include "domain.h"
#include "group.h"
#include "error.h"
@ -54,6 +55,7 @@ void FixMomentumKokkos<DeviceType>::init()
template<class DeviceType>
double FixMomentumKokkos<DeviceType>::get_kinetic_energy(
int nlocal,
typename AT::t_v_array_randomread v,
typename AT::t_int_1d_randomread mask)
{
@ -61,7 +63,7 @@ double FixMomentumKokkos<DeviceType>::get_kinetic_energy(
// D.I. : does this rmass check make sense in Kokkos mode ?
if (atom->rmass) {
atomKK->sync(execution_space, RMASS_MASK);
typename AT::t_float_1d_randomread rmass = atomKK->k_rmass;
typename AT::t_float_1d_randomread rmass = atomKK->k_rmass.view<DeviceType>();
Kokkos::parallel_reduce(nlocal, LAMMPS_LAMBDA(int i, double& update) {
if (mask(i) & groupbit)
update += rmass(i) *
@ -70,8 +72,8 @@ double FixMomentumKokkos<DeviceType>::get_kinetic_energy(
} else {
// D.I. : why is there no MASS_MASK ?
atomKK->sync(execution_space, TYPE_MASK);
typename AT::t_int_1d_randomread type = atomKK->k_type;
typename AT::t_float_1d_randomread mass = atomKK->k_mass;
typename AT::t_int_1d_randomread type = atomKK->k_type.view<DeviceType>();
typename AT::t_float_1d_randomread mass = atomKK->k_mass.view<DeviceType>();
Kokkos::parallel_reduce(nlocal, LAMMPS_LAMBDA(int i, double& update) {
if (mask(i) & groupbit)
update += mass(type(i)) *
@ -104,7 +106,7 @@ void FixMomentumKokkos<DeviceType>::end_of_step()
// compute kinetic energy before momentum removal, if needed
if (rescale) ekin_old = get_kinetic_energy(v, mask);
if (rescale) ekin_old = get_kinetic_energy(nlocal, v, mask);
if (linear) {
double vcm[3];
@ -115,9 +117,9 @@ void FixMomentumKokkos<DeviceType>::end_of_step()
Kokkos::parallel_for(nlocal, LAMMPS_LAMBDA(int i) {
if (mask(i) & groupbit) {
if (xflag) v(i,0) -= vcm(0);
if (yflag) v(i,1) -= vcm(1);
if (zflag) v(i,2) -= vcm(2);
if (xflag) v(i,0) -= vcm[0];
if (yflag) v(i,1) -= vcm[1];
if (zflag) v(i,2) -= vcm[2];
}
});
}
@ -142,7 +144,7 @@ void FixMomentumKokkos<DeviceType>::end_of_step()
if (mask[i] & groupbit) {
double dx,dy,dz;
double unwrap[3];
domain->unmap(x[i],image[i],unwrap);
domain->unmap(&x(i,0),image(i),unwrap); // this will not work in CUDA !!!
dx = unwrap[0] - xcm[0];
dy = unwrap[1] - xcm[1];
dz = unwrap[2] - xcm[2];
@ -157,7 +159,7 @@ void FixMomentumKokkos<DeviceType>::end_of_step()
if (rescale) {
ekin_new = get_kinetic_energy(v, mask);
ekin_new = get_kinetic_energy(nlocal, v, mask);
double factor = 1.0;
if (ekin_new != 0.0) factor = sqrt(ekin_old/ekin_new);
@ -171,3 +173,10 @@ void FixMomentumKokkos<DeviceType>::end_of_step()
}
}
namespace LAMMPS_NS {
template class FixMomentumKokkos<LMPDeviceType>;
#ifdef KOKKOS_HAVE_CUDA
template class FixMomentumKokkos<LMPHostType>;
#endif
}

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@ -23,6 +23,7 @@ FixStyle(momentum/kk/host,FixMomentumKokkos<LMPHostType>)
#define LMP_FIX_MOMENTUM_KOKKOS_H
#include "fix_momentum.h"
#include "kokkos_type.h"
namespace LAMMPS_NS {
@ -31,11 +32,15 @@ class FixMomentumKokkos : public FixMomentum {
public:
typedef ArrayTypes<DeviceType> AT;
FixMomentum(class LAMMPS *, int, char **);
FixMomentumKokkos(class LAMMPS *, int, char **);
void init();
void end_of_step();
private:
double get_kinetic_energy(
int nlocal,
typename AT::t_v_array_randomread v,
typename AT::t_int_1d_randomread mask);
};
}

View File

@ -1441,7 +1441,7 @@ void Domain::unmap(double *x, imageint image)
for triclinic, use h[] to add in tilt factors in other dims as needed
------------------------------------------------------------------------- */
void Domain::unmap(double *x, imageint image, double *y)
void Domain::unmap(const double *x, imageint image, double *y)
{
int xbox = (image & IMGMASK) - IMGMAX;
int ybox = (image >> IMGBITS & IMGMASK) - IMGMAX;

View File

@ -119,7 +119,7 @@ class Domain : protected Pointers {
void remap(double *);
void remap_near(double *, double *);
void unmap(double *, imageint);
void unmap(double *, imageint, double *);
void unmap(const double *, imageint, double *);
void image_flip(int, int, int);
int ownatom(int, double *, imageint *, int);

View File

@ -31,7 +31,7 @@ class FixMomentum : public Fix {
void init();
void end_of_step();
private:
protected:
int linear,angular,rescale;
int xflag,yflag,zflag;
int dynamic;