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git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@36 f3b2605a-c512-4ea7-a41b-209d697bcdaa

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pscrozi 2006-09-27 23:56:03 +00:00
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2 changed files with 12 additions and 12 deletions
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12
doc/Section_howto.html
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@ -503,14 +503,14 @@ which has been linked to LAMMPS as a library. This is the way the
<A HREF = "http://www.rpi.edu/~anderk5/lab">POEMS</A> package that performs constrained rigid-body motion on
groups of atoms is hooked to LAMMPS. See the
<A HREF = "fix_poems.html">fix_poems</A> command for more details. See <A HREF = "Section_modify.html">this
section</A> of the documention for info on how to add
section</A> of the documentation for info on how to add
a new fix to LAMMPS.
</P>
<P>(2) Define a new LAMMPS command that calls the other code. This is
conceptually similar to method (1), but in this case LAMMPS and the
the other code are on a more equal footing. Note that now the other
other code are on a more equal footing. Note that now the other
code is not called during the timesteps of a LAMMPS run, but between
runs. The LAMMPS input script can be used to alternate LAMMPS runs
with calls to the other code, invoked via the new command. The
@ -525,7 +525,7 @@ processors to start up another program). In the latter case the
stand-alone code could communicate with LAMMPS thru files that the
command writes and reads.
</P>
<P>See <A HREF = "Section_modify.html">this section</A> of the documention for how to
<P>See <A HREF = "Section_modify.html">this section</A> of the documentation for how to
add a new command to LAMMPS.
</P>
<P>(3) Use LAMMPS as a library called by another code. In this case the
@ -535,8 +535,8 @@ Again, the <A HREF = "run.html">run</A> command has options that allow it to be
invoked with minimal overhead (no setup or clean-up) if you wish to do
multiple short runs, driven by another program.
</P>
<P><A HREF = "Section_start.html#2_2">This section</A> of the documention describes how
to build LAMMPS as a library. Once this is done, you can interface
<P><A HREF = "Section_start.html#2_2">This section</A> of the documentation describes
how to build LAMMPS as a library. Once this is done, you can interface
with LAMMPS either via C++, C, or Fortran (or any other language that
supports a vanilla C-like interface, e.g. a scripting language). For
example, from C++ you could create an "instance" of LAMMPS, and
@ -583,7 +583,7 @@ back into LAMMPS.
<A NAME = "Cornell"></A>
<P><B>(Cornell)</B> Corenll, Cieplak, Bayly, Gould, Merz, Ferguson,
<P><B>(Cornell)</B> Cornell, Cieplak, Bayly, Gould, Merz, Ferguson,
Spellmeyer, Fox, Caldwell, Kollman, JACS 117, 5179-5197 (1995).
</P>
<A NAME = "Horn"></A>

12
doc/Section_howto.txt
View File

@ -499,14 +499,14 @@ which has been linked to LAMMPS as a library. This is the way the
"POEMS"_poems package that performs constrained rigid-body motion on
groups of atoms is hooked to LAMMPS. See the
"fix_poems"_fix_poems.html command for more details. See "this
section"_Section_modify.html of the documention for info on how to add
section"_Section_modify.html of the documentation for info on how to add
a new fix to LAMMPS.
:link(poems,http://www.rpi.edu/~anderk5/lab)
(2) Define a new LAMMPS command that calls the other code. This is
conceptually similar to method (1), but in this case LAMMPS and the
the other code are on a more equal footing. Note that now the other
other code are on a more equal footing. Note that now the other
code is not called during the timesteps of a LAMMPS run, but between
runs. The LAMMPS input script can be used to alternate LAMMPS runs
with calls to the other code, invoked via the new command. The
@ -521,7 +521,7 @@ processors to start up another program). In the latter case the
stand-alone code could communicate with LAMMPS thru files that the
command writes and reads.
See "this section"_Section_modify.html of the documention for how to
See "this section"_Section_modify.html of the documentation for how to
add a new command to LAMMPS.
(3) Use LAMMPS as a library called by another code. In this case the
@ -531,8 +531,8 @@ Again, the "run"_run.html command has options that allow it to be
invoked with minimal overhead (no setup or clean-up) if you wish to do
multiple short runs, driven by another program.
"This section"_Section_start.html#2_2 of the documention describes how
to build LAMMPS as a library. Once this is done, you can interface
"This section"_Section_start.html#2_2 of the documentation describes
how to build LAMMPS as a library. Once this is done, you can interface
with LAMMPS either via C++, C, or Fortran (or any other language that
supports a vanilla C-like interface, e.g. a scripting language). For
example, from C++ you could create an "instance" of LAMMPS, and
@ -578,7 +578,7 @@ back into LAMMPS.
:line
:link(Cornell)
[(Cornell)] Corenll, Cieplak, Bayly, Gould, Merz, Ferguson,
[(Cornell)] Cornell, Cieplak, Bayly, Gould, Merz, Ferguson,
Spellmeyer, Fox, Caldwell, Kollman, JACS 117, 5179-5197 (1995).
:link(Horn)