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git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@36 f3b2605a-c512-4ea7-a41b-209d697bcdaa

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pscrozi 2006-09-27 23:56:03 +00:00
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12
doc/Section_howto.html
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@ -503,14 +503,14 @@ which has been linked to LAMMPS as a library. This is the way the
<A HREF = "http://www.rpi.edu/~anderk5/lab">POEMS</A> package that performs constrained rigid-body motion on <A HREF = "http://www.rpi.edu/~anderk5/lab">POEMS</A> package that performs constrained rigid-body motion on
groups of atoms is hooked to LAMMPS. See the groups of atoms is hooked to LAMMPS. See the
<A HREF = "fix_poems.html">fix_poems</A> command for more details. See <A HREF = "Section_modify.html">this <A HREF = "fix_poems.html">fix_poems</A> command for more details. See <A HREF = "Section_modify.html">this
section</A> of the documention for info on how to add section</A> of the documentation for info on how to add
a new fix to LAMMPS. a new fix to LAMMPS.
</P> </P>
<P>(2) Define a new LAMMPS command that calls the other code. This is <P>(2) Define a new LAMMPS command that calls the other code. This is
conceptually similar to method (1), but in this case LAMMPS and the conceptually similar to method (1), but in this case LAMMPS and the
the other code are on a more equal footing. Note that now the other other code are on a more equal footing. Note that now the other
code is not called during the timesteps of a LAMMPS run, but between code is not called during the timesteps of a LAMMPS run, but between
runs. The LAMMPS input script can be used to alternate LAMMPS runs runs. The LAMMPS input script can be used to alternate LAMMPS runs
with calls to the other code, invoked via the new command. The with calls to the other code, invoked via the new command. The
@ -525,7 +525,7 @@ processors to start up another program). In the latter case the
stand-alone code could communicate with LAMMPS thru files that the stand-alone code could communicate with LAMMPS thru files that the
command writes and reads. command writes and reads.
</P> </P>
<P>See <A HREF = "Section_modify.html">this section</A> of the documention for how to <P>See <A HREF = "Section_modify.html">this section</A> of the documentation for how to
add a new command to LAMMPS. add a new command to LAMMPS.
</P> </P>
<P>(3) Use LAMMPS as a library called by another code. In this case the <P>(3) Use LAMMPS as a library called by another code. In this case the
@ -535,8 +535,8 @@ Again, the <A HREF = "run.html">run</A> command has options that allow it to be
invoked with minimal overhead (no setup or clean-up) if you wish to do invoked with minimal overhead (no setup or clean-up) if you wish to do
multiple short runs, driven by another program. multiple short runs, driven by another program.
</P> </P>
<P><A HREF = "Section_start.html#2_2">This section</A> of the documention describes how <P><A HREF = "Section_start.html#2_2">This section</A> of the documentation describes
to build LAMMPS as a library. Once this is done, you can interface how to build LAMMPS as a library. Once this is done, you can interface
with LAMMPS either via C++, C, or Fortran (or any other language that with LAMMPS either via C++, C, or Fortran (or any other language that
supports a vanilla C-like interface, e.g. a scripting language). For supports a vanilla C-like interface, e.g. a scripting language). For
example, from C++ you could create an "instance" of LAMMPS, and example, from C++ you could create an "instance" of LAMMPS, and
@ -583,7 +583,7 @@ back into LAMMPS.
<A NAME = "Cornell"></A> <A NAME = "Cornell"></A>
<P><B>(Cornell)</B> Corenll, Cieplak, Bayly, Gould, Merz, Ferguson, <P><B>(Cornell)</B> Cornell, Cieplak, Bayly, Gould, Merz, Ferguson,
Spellmeyer, Fox, Caldwell, Kollman, JACS 117, 5179-5197 (1995). Spellmeyer, Fox, Caldwell, Kollman, JACS 117, 5179-5197 (1995).
</P> </P>
<A NAME = "Horn"></A> <A NAME = "Horn"></A>

12
doc/Section_howto.txt
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@ -499,14 +499,14 @@ which has been linked to LAMMPS as a library. This is the way the
"POEMS"_poems package that performs constrained rigid-body motion on "POEMS"_poems package that performs constrained rigid-body motion on
groups of atoms is hooked to LAMMPS. See the groups of atoms is hooked to LAMMPS. See the
"fix_poems"_fix_poems.html command for more details. See "this "fix_poems"_fix_poems.html command for more details. See "this
section"_Section_modify.html of the documention for info on how to add section"_Section_modify.html of the documentation for info on how to add
a new fix to LAMMPS. a new fix to LAMMPS.
:link(poems,http://www.rpi.edu/~anderk5/lab) :link(poems,http://www.rpi.edu/~anderk5/lab)
(2) Define a new LAMMPS command that calls the other code. This is (2) Define a new LAMMPS command that calls the other code. This is
conceptually similar to method (1), but in this case LAMMPS and the conceptually similar to method (1), but in this case LAMMPS and the
the other code are on a more equal footing. Note that now the other other code are on a more equal footing. Note that now the other
code is not called during the timesteps of a LAMMPS run, but between code is not called during the timesteps of a LAMMPS run, but between
runs. The LAMMPS input script can be used to alternate LAMMPS runs runs. The LAMMPS input script can be used to alternate LAMMPS runs
with calls to the other code, invoked via the new command. The with calls to the other code, invoked via the new command. The
@ -521,7 +521,7 @@ processors to start up another program). In the latter case the
stand-alone code could communicate with LAMMPS thru files that the stand-alone code could communicate with LAMMPS thru files that the
command writes and reads. command writes and reads.
See "this section"_Section_modify.html of the documention for how to See "this section"_Section_modify.html of the documentation for how to
add a new command to LAMMPS. add a new command to LAMMPS.
(3) Use LAMMPS as a library called by another code. In this case the (3) Use LAMMPS as a library called by another code. In this case the
@ -531,8 +531,8 @@ Again, the "run"_run.html command has options that allow it to be
invoked with minimal overhead (no setup or clean-up) if you wish to do invoked with minimal overhead (no setup or clean-up) if you wish to do
multiple short runs, driven by another program. multiple short runs, driven by another program.
"This section"_Section_start.html#2_2 of the documention describes how "This section"_Section_start.html#2_2 of the documentation describes
to build LAMMPS as a library. Once this is done, you can interface how to build LAMMPS as a library. Once this is done, you can interface
with LAMMPS either via C++, C, or Fortran (or any other language that with LAMMPS either via C++, C, or Fortran (or any other language that
supports a vanilla C-like interface, e.g. a scripting language). For supports a vanilla C-like interface, e.g. a scripting language). For
example, from C++ you could create an "instance" of LAMMPS, and example, from C++ you could create an "instance" of LAMMPS, and
@ -578,7 +578,7 @@ back into LAMMPS.
:line :line
:link(Cornell) :link(Cornell)
[(Cornell)] Corenll, Cieplak, Bayly, Gould, Merz, Ferguson, [(Cornell)] Cornell, Cieplak, Bayly, Gould, Merz, Ferguson,
Spellmeyer, Fox, Caldwell, Kollman, JACS 117, 5179-5197 (1995). Spellmeyer, Fox, Caldwell, Kollman, JACS 117, 5179-5197 (1995).
:link(Horn) :link(Horn)