From b6e626bc5b55445a3fe96d2ff63106b3aa1ee6df Mon Sep 17 00:00:00 2001 From: sjplimp Date: Fri, 8 Jun 2012 17:08:04 +0000 Subject: [PATCH] git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@8249 f3b2605a-c512-4ea7-a41b-209d697bcdaa --- doc/Section_intro.html | 3 ++- doc/Section_intro.txt | 3 ++- doc/compute_rdf.html | 3 ++- doc/compute_rdf.txt | 3 ++- doc/dump.html | 4 ++-- doc/dump.txt | 4 ++-- 6 files changed, 12 insertions(+), 8 deletions(-) diff --git a/doc/Section_intro.html b/doc/Section_intro.html index 434b0a226a..3ce8ad865a 100644 --- a/doc/Section_intro.html +++ b/doc/Section_intro.html @@ -200,7 +200,8 @@ commands)
  • Brownian dynamics
  • rigid body integration
  • energy minimization via conjugate gradient or steepest descent relaxation -
  • rRESPA hierarchical timestepping +
  • rRESPA hierarchical timestepping +
  • rerun command for post-processing of dump files

    Diagnostics

    diff --git a/doc/Section_intro.txt b/doc/Section_intro.txt index aae41e9728..360089c5ac 100644 --- a/doc/Section_intro.txt +++ b/doc/Section_intro.txt @@ -198,7 +198,8 @@ Integrators :h4 Brownian dynamics rigid body integration energy minimization via conjugate gradient or steepest descent relaxation - rRESPA hierarchical timestepping :ul + rRESPA hierarchical timestepping + rerun command for post-processing of dump files :ul Diagnostics :h4 diff --git a/doc/compute_rdf.html b/doc/compute_rdf.html index 50bb94428a..1815a57e80 100644 --- a/doc/compute_rdf.html +++ b/doc/compute_rdf.html @@ -119,7 +119,8 @@ also numbers >= 0.0.

    The RDF is not computed for distances longer than the force cutoff, since processors (in parallel) don't know about atom coordinates for atoms further away than that distance. If you want an RDF for larger -distances, you'll need to post-process a dump file. +distances, you can use the rerun command to post-process +a dump file.

    Related commands:

    diff --git a/doc/compute_rdf.txt b/doc/compute_rdf.txt index afda1a28b7..0c3db53305 100644 --- a/doc/compute_rdf.txt +++ b/doc/compute_rdf.txt @@ -116,7 +116,8 @@ also numbers >= 0.0. The RDF is not computed for distances longer than the force cutoff, since processors (in parallel) don't know about atom coordinates for atoms further away than that distance. If you want an RDF for larger -distances, you'll need to post-process a dump file. +distances, you can use the "rerun"_rerun.html command to post-process +a dump file. [Related commands:] diff --git a/doc/dump.html b/doc/dump.html index a18bbfd895..f3102912e0 100644 --- a/doc/dump.html +++ b/doc/dump.html @@ -147,8 +147,8 @@ individual values and the file itself.

    The atom, local, and custom styles create files in a simple text format that is self-explanatory when viewing a dump file. Many of the LAMMPS post-processing tools, including -Pizza.py, work with -this format. +Pizza.py, work with this +format, as does the rerun fommand.

    For post-processing purposes the atom and custom text files are self-describing in the following sense. diff --git a/doc/dump.txt b/doc/dump.txt index d11a64c877..d7c89908f2 100644 --- a/doc/dump.txt +++ b/doc/dump.txt @@ -136,8 +136,8 @@ individual values and the file itself. The {atom}, {local}, and {custom} styles create files in a simple text format that is self-explanatory when viewing a dump file. Many of the LAMMPS "post-processing tools"_Section_tools.html, including -"Pizza.py"_http://www.sandia.gov/~sjplimp/pizza.html, work with -this format. +"Pizza.py"_http://www.sandia.gov/~sjplimp/pizza.html, work with this +format, as does the "rerun"_rerun.html fommand. For post-processing purposes the {atom} and {custom} text files are self-describing in the following sense.