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rename references to USER-CG-CMM to USER-CGSDK

This commit is contained in:
Axel Kohlmeyer 2017-04-26 19:27:13 -04:00
parent 949d61e01e
commit af74874516
4 changed files with 20 additions and 18 deletions
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2
doc/src/Section_intro.txt
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@ -515,7 +515,7 @@ the packages they have written are somewhat unique to LAMMPS and the
code would not be as general-purpose as it is without their expertise
and efforts.
Axel Kohlmeyer (Temple U), akohlmey at gmail.com, SVN and Git repositories, indefatigable mail list responder, USER-CG-CMM and USER-OMP packages
Axel Kohlmeyer (Temple U), akohlmey at gmail.com, SVN and Git repositories, indefatigable mail list responder, USER-CGSDK and USER-OMP packages
Roy Pollock (LLNL), Ewald and PPPM solvers
Mike Brown (ORNL), brownw at ornl.gov, GPU package
Greg Wagner (Sandia), gjwagne at sandia.gov, MEAM package for MEAM potential

32
doc/src/Section_packages.txt
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@ -1139,8 +1139,8 @@ The current list of user-contributed packages is as follows:
Package, Description, Author(s), Doc page, Example, Pic/movie, Library
"USER-ATC"_#USER-ATC, atom-to-continuum coupling, Jones & Templeton & Zimmerman (1), "fix atc"_fix_atc.html, USER/atc, "atc"_atc, lib/atc
"USER-AWPMD"_#USER-AWPMD, wave-packet MD, Ilya Valuev (JIHT), "pair_style awpmd/cut"_pair_awpmd.html, USER/awpmd, -, lib/awpmd
"USER-CG-CMM"_#USER-CG-CMM, coarse-graining model, Axel Kohlmeyer (Temple U), "pair_style lj/sdk"_pair_sdk.html, USER/cg-cmm, "cg"_cg, -
"USER-CGDNA"_#USER-CGDNA, coarse-grained DNA force fields, Oliver Henrich (U Strathclyde Glasgow), src/USER-CGDNA/README, USER/cgdna, -, -
"USER-CGSDK"_#USER-CGSDK, SDK coarse-graining model, Axel Kohlmeyer (Temple U), "pair_style lj/sdk"_pair_sdk.html, USER/cgsdk, "cgsdk"_cgsdk, -
"USER-COLVARS"_#USER-COLVARS, collective variables, Fiorin & Henin & Kohlmeyer (2), "fix colvars"_fix_colvars.html, USER/colvars, "colvars"_colvars, lib/colvars
"USER-DIFFRACTION"_#USER-DIFFRACTION, virutal x-ray and electron diffraction, Shawn Coleman (ARL),"compute xrd"_compute_xrd.html, USER/diffraction, -, -
"USER-DPD"_#USER-DPD, reactive dissipative particle dynamics (DPD), Larentzos & Mattox & Brennan (5), src/USER-DPD/README, USER/dpd, -, -
@ -1169,7 +1169,7 @@ Package, Description, Author(s), Doc page, Example, Pic/movie, Library
:tb(ea=c)
:link(atc,http://lammps.sandia.gov/pictures.html#atc)
:link(cg,http://lammps.sandia.gov/pictures.html#cg)
:link(cgsdk,http://lammps.sandia.gov/pictures.html#cg)
:link(eff,http://lammps.sandia.gov/movies.html#eff)
:link(manifold,http://lammps.sandia.gov/movies.html#manifold)
:link(sph,http://lammps.sandia.gov/movies.html#sph)
@ -1267,18 +1267,18 @@ physik.hu-berlin.de). Contact him directly if you have questions.
:line
USER-CG-CMM package :link(USER-CG-CMM),h5
USER-CGSDK package :link(USER-CGSDK),h5
Contents: CG-CMM stands for coarse-grained ??. This package
implements several pair styles and an angle style using the coarse
grained parametrization of Shinoda, DeVane, Klein, Mol Sim, 33, 27
(2007) (SDK), with extensions to simulate ionic liquids, electrolytes,
lipids and charged amino acids. See src/USER-CG-CMM/README for more
details.
Contents: CGSDK stands for Shinoda-DeVane-Klein (SDK) coarse-grained
molecular dynamics force field. This package implements several pair
styles and an angle style using the coarse grained parametrization of
Shinoda, DeVane, Klein, Mol Sim, 33, 27 (2007) (SDK), with extensions
to simulate ionic liquids, electrolytes, lipids and charged amino acids.
See src/USER-CGSDK/README for more details.
Supporting info: src/USER-CG-CMM/README, "pair lj/sdk"_pair_sdk.html,
Supporting info: src/USER-CGSDK/README, "pair lj/sdk"_pair_sdk.html,
"pair lj/sdk/coul/long"_pair_sdk.html, "angle sdk"_angle_sdk.html,
examples/USER/cg-cmm
examples/USER/cgsdk
Author: Axel Kohlmeyer at Temple U (akohlmey at gmail.com). Contact
him directly if you have questions.
@ -1329,10 +1329,12 @@ src/USER-COLVARS/README, lib/colvars/README, "fix
colvars"_fix_colvars.html, examples/USER/colvars
Authors: Axel Kohlmeyer at Temple U (akohlmey at gmail.com) wrote the
fix. The COLVARS library itself is written and maintained by Giacomo
Fiorin (ICMS, Temple University, Philadelphia, PA, USA) and Jerome
Henin (LISM, CNRS, Marseille, France). Contact them directly if you
have questions.
interface that integrates colvars into LAMMPS. The COLVARS library
itself is written and maintained by Giacomo Fiorin (ICMS, Temple
University, Philadelphia, PA, USA) and Jerome Henin (LISM, CNRS,
Marseille, France). For more info, and to communicate with the COLVARS
developers, please go to COLVARS home page at
"http://colvars.github.io"_http://colvars.github.io/.
:line

2
doc/src/angle_sdk.txt
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@ -46,7 +46,7 @@ from the pair_style.
[Restrictions:]
This angle style can only be used if LAMMPS was built with the
USER-CG-CMM package. See the "Making
USER-CGSDK package. See the "Making
LAMMPS"_Section_start.html#start_3 section for more info on packages.
[Related commands:]

2
doc/src/pair_sdk.txt
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@ -134,7 +134,7 @@ respa"_run_style.html command.
[Restrictions:]
All of the lj/sdk pair styles are part of the USER-CG-CMM package.
All of the lj/sdk pair styles are part of the USER-CGSDK package.
The {lj/sdk/coul/long} style also requires the KSPACE package to be
built (which is enabled by default). They are only enabled if LAMMPS
was built with that package. See the "Making