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git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13659 f3b2605a-c512-4ea7-a41b-209d697bcdaa

This commit is contained in:
sjplimp 2015-07-21 22:48:09 +00:00
parent 62d15abd2a
commit adc94ddaef
6 changed files with 12 additions and 12 deletions
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2
doc/atom_modify.html
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@ -99,7 +99,7 @@ small fraction of all the atoms, and there are other operations LAMMPS
is performing that will be sped-up significantly by being able to loop
over the smaller set of atoms. Otherwise the reordering required by
this option will be a net slow-down. The <A HREF = "neigh_modify.html">neigh_modify
include</A> and <A HREF = "communicate.html">communicate group</A>
include</A> and <A HREF = "comm_modify.html">comm_modify group</A>
commands are two examples of commands that require this setting to
work efficiently. Several <A HREF = "fix.html">fixes</A>, most notably time
integration fixes like <A HREF = "fix_nve.html">fix nve</A>, also take advantage of

2
doc/atom_modify.txt
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@ -93,7 +93,7 @@ small fraction of all the atoms, and there are other operations LAMMPS
is performing that will be sped-up significantly by being able to loop
over the smaller set of atoms. Otherwise the reordering required by
this option will be a net slow-down. The "neigh_modify
include"_neigh_modify.html and "communicate group"_communicate.html
include"_neigh_modify.html and "comm_modify group"_comm_modify.html
commands are two examples of commands that require this setting to
work efficiently. Several "fixes"_fix.html, most notably time
integration fixes like "fix nve"_fix_nve.html, also take advantage of

2
doc/neigh_modify.html
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@ -103,7 +103,7 @@ nearby periodic images. The only way this should happen is if the
pairwise cutoff is so short that atoms that are part of the same
interaction are not communicated as ghost atoms. This is an unusual
model (e.g. no pair interactions at all) and the problem can be fixed
by use of the <A HREF = "communicate.html">communicate cutoff</A> command. Note
by use of the <A HREF = "comm_modify.html">comm_modify cutoff</A> command. Note
that to save time, the default <I>cluster</I> setting is <I>no</I>, so that this
check is not performed.
</P>

2
doc/neigh_modify.txt
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@ -98,7 +98,7 @@ nearby periodic images. The only way this should happen is if the
pairwise cutoff is so short that atoms that are part of the same
interaction are not communicated as ghost atoms. This is an unusual
model (e.g. no pair interactions at all) and the problem can be fixed
by use of the "communicate cutoff"_communicate.html command. Note
by use of the "comm_modify cutoff"_comm_modify.html command. Note
that to save time, the default {cluster} setting is {no}, so that this
check is not performed.

8
doc/neighbor.html
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@ -58,9 +58,9 @@ other type pairs have a much shorter cutoff. For style <I>multi</I> the
bin size is set to 1/2 of the shortest cutoff distance and multiple
sets of bins are defined to search over for different atom types.
This imposes some extra setup overhead, but the searches themselves
may be much faster for the short-cutoff cases. See the <A HREF = "communicate.html">communicate
multi</A> command for a communication option option that
may also be beneficial for simulations of this kind.
may be much faster for the short-cutoff cases. See the <A HREF = "comm_modify.html">comm_modify
mode multi</A> command for a communication option option
that may also be beneficial for simulations of this kind.
</P>
<P>The <A HREF = "neigh_modify.html">neigh_modify</A> command has additional options
that control how often neighbor lists are built and which pairs are
@ -76,7 +76,7 @@ section</A> for details.
<P><B>Related commands:</B>
</P>
<P><A HREF = "neigh_modify.html">neigh_modify</A>, <A HREF = "units.html">units</A>,
<A HREF = "communicate.html">communicate</A>
<A HREF = "cmom_modify.html">comm_modify</A>
</P>
<P><B>Default:</B>
</P>

8
doc/neighbor.txt
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@ -55,9 +55,9 @@ other type pairs have a much shorter cutoff. For style {multi} the
bin size is set to 1/2 of the shortest cutoff distance and multiple
sets of bins are defined to search over for different atom types.
This imposes some extra setup overhead, but the searches themselves
may be much faster for the short-cutoff cases. See the "communicate
multi"_communicate.html command for a communication option option that
may also be beneficial for simulations of this kind.
may be much faster for the short-cutoff cases. See the "comm_modify
mode multi"_comm_modify.html command for a communication option option
that may also be beneficial for simulations of this kind.
The "neigh_modify"_neigh_modify.html command has additional options
that control how often neighbor lists are built and which pairs are
@ -73,7 +73,7 @@ section"_Section_start.html#start_8 for details.
[Related commands:]
"neigh_modify"_neigh_modify.html, "units"_units.html,
"communicate"_communicate.html
"comm_modify"_cmom_modify.html
[Default:]