git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@2814 f3b2605a-c512-4ea7-a41b-209d697bcdaa

doc/fix_nph.html

@@ -187,7 +187,7 @@ fix to add the energy change induced by Nose/Hoover barostatting to
 the system's potential energy as part of <A HREF = "thermo_style.html">thermodynamic
 output</A>.
 </P>
-<P>The potential energy change due to this fix is stored as a scalar
+<P>The cummulative energy change due to this fix is stored as a scalar
 quantity, which can be accessed by various <A HREF = "Section_howto.html#4_15">output
 commands</A>.  The scalar value calculated by
 this fix is "extensive", meaning it scales with the number of atoms in

doc/fix_nph.txt

@@ -177,7 +177,7 @@ fix to add the energy change induced by Nose/Hoover barostatting to
 the system's potential energy as part of "thermodynamic
 output"_thermo_style.html.
 
-The potential energy change due to this fix is stored as a scalar
+The cummulative energy change due to this fix is stored as a scalar
 quantity, which can be accessed by various "output
 commands"_Section_howto.html#4_15.  The scalar value calculated by
 this fix is "extensive", meaning it scales with the number of atoms in

doc/fix_npt.html

@@ -224,7 +224,7 @@ fix to add the energy change induced by Nose/Hoover thermostatting and
 barostatting to the system's potential energy as part of
 <A HREF = "thermo_style.html">thermodynamic output</A>.
 </P>
-<P>The potential energy change due to this fix is stored as a scalar
+<P>The cummulative energy change due to this fix is stored as a scalar
 quantity, which can be accessed by various <A HREF = "Section_howto.html#4_15">output
 commands</A>.  The scalar value calculated by
 this fix is "extensive", meaning it scales with the number of atoms in

doc/fix_npt.txt

@@ -213,7 +213,7 @@ fix to add the energy change induced by Nose/Hoover thermostatting and
 barostatting to the system's potential energy as part of
 "thermodynamic output"_thermo_style.html.
 
-The potential energy change due to this fix is stored as a scalar
+The cummulative energy change due to this fix is stored as a scalar
 quantity, which can be accessed by various "output
 commands"_Section_howto.html#4_15.  The scalar value calculated by
 this fix is "extensive", meaning it scales with the number of atoms in

doc/fix_npt_asphere.html

@@ -198,9 +198,11 @@ fix to add the energy change induced by Nose/Hoover thermostatting and
 barostatting to the system's potential energy as part of
 <A HREF = "thermo_style.html">thermodynamic output</A>.
 </P>
-<P>The potential energy change due to this fix is stored as a scalar
+<P>The cummulative energy change due to this fix is stored as a scalar
 quantity, which can be accessed by various <A HREF = "Section_howto.html#4_15">output
-commands</A>.
+commands</A>.  The scalar value calculated by
+this fix is "extensive", meaning it scales with the number of atoms in
+the simulation.
 </P>
 <P>This fix can ramp its target temperature and pressure over multiple
 runs, using the <I>start</I> and <I>stop</I> keywords of the <A HREF = "run.html">run</A>

doc/fix_npt_asphere.txt

@@ -187,9 +187,11 @@ fix to add the energy change induced by Nose/Hoover thermostatting and
 barostatting to the system's potential energy as part of
 "thermodynamic output"_thermo_style.html.
 
-The potential energy change due to this fix is stored as a scalar
+The cummulative energy change due to this fix is stored as a scalar
 quantity, which can be accessed by various "output
-commands"_Section_howto.html#4_15.
+commands"_Section_howto.html#4_15.  The scalar value calculated by
+this fix is "extensive", meaning it scales with the number of atoms in
+the simulation.
 
 This fix can ramp its target temperature and pressure over multiple
 runs, using the {start} and {stop} keywords of the "run"_run.html

doc/fix_npt_sphere.html

@@ -200,9 +200,11 @@ fix to add the energy change induced by Nose/Hoover thermostatting and
 barostatting to the system's potential energy as part of
 <A HREF = "thermo_style.html">thermodynamic output</A>.
 </P>
-<P>The potential energy change due to this fix is stored as a scalar
-quantity, which can be accessed by various <A HREF = "Section_howto.html#4_15">output
-commands</A>.
+<P>The potential cummulative energy change due to this fix is stored as a
+scalar quantity, which can be accessed by various <A HREF = "Section_howto.html#4_15">output
+commands</A>.  The scalar value calculated by
+this fix is "extensive", meaning it scales with the number of atoms in
+the simulation.
 </P>
 <P>This fix can ramp its target temperature and pressure over multiple
 runs, using the <I>start</I> and <I>stop</I> keywords of the <A HREF = "run.html">run</A>

doc/fix_npt_sphere.txt

@@ -189,9 +189,11 @@ fix to add the energy change induced by Nose/Hoover thermostatting and
 barostatting to the system's potential energy as part of
 "thermodynamic output"_thermo_style.html.
 
-The potential energy change due to this fix is stored as a scalar
-quantity, which can be accessed by various "output
-commands"_Section_howto.html#4_15.
+The potential cummulative energy change due to this fix is stored as a
+scalar quantity, which can be accessed by various "output
+commands"_Section_howto.html#4_15.  The scalar value calculated by
+this fix is "extensive", meaning it scales with the number of atoms in
+the simulation.
 
 This fix can ramp its target temperature and pressure over multiple
 runs, using the {start} and {stop} keywords of the "run"_run.html

doc/fix_nvt.html

@@ -133,7 +133,7 @@ fix to add the energy change induced by Nose/Hoover thermostatting to
 the system's potential energy as part of <A HREF = "thermo_style.html">thermodynamic
 output</A>.
 </P>
-<P>The potential energy change due to this fix is stored as a scalar
+<P>The cummulative energy change due to this fix is stored as a scalar
 quantity, which can be accessed by various <A HREF = "Section_howto.html#4_15">output
 commands</A>.  The scalar value calculated by
 this fix is "extensive", meaning it scales with the number of atoms in

doc/fix_nvt.txt

@@ -124,7 +124,7 @@ fix to add the energy change induced by Nose/Hoover thermostatting to
 the system's potential energy as part of "thermodynamic
 output"_thermo_style.html.
 
-The potential energy change due to this fix is stored as a scalar
+The cummulative energy change due to this fix is stored as a scalar
 quantity, which can be accessed by various "output
 commands"_Section_howto.html#4_15.  The scalar value calculated by
 this fix is "extensive", meaning it scales with the number of atoms in

doc/fix_nvt_asphere.html

@@ -122,9 +122,11 @@ fix to add the energy change induced by Nose/Hoover thermostatting to
 the system's potential energy as part of <A HREF = "thermo_style.html">thermodynamic
 output</A>.
 </P>
-<P>The potential energy change due to this fix is stored as a scalar
+<P>The cummulative energy change due to this fix is stored as a scalar
 quantity, which can be accessed by various <A HREF = "Section_howto.html#4_15">output
-commands</A>.
+commands</A>.  The scalar value calculated by
+this fix is "extensive", meaning it scales with the number of atoms in
+the simulation.
 </P>
 <P>This fix can ramp its target temperature over multiple runs, using the
 <I>start</I> and <I>stop</I> keywords of the <A HREF = "run.html">run</A> command.  See the

doc/fix_nvt_asphere.txt

@@ -113,9 +113,11 @@ fix to add the energy change induced by Nose/Hoover thermostatting to
 the system's potential energy as part of "thermodynamic
 output"_thermo_style.html.
 
-The potential energy change due to this fix is stored as a scalar
+The cummulative energy change due to this fix is stored as a scalar
 quantity, which can be accessed by various "output
-commands"_Section_howto.html#4_15.
+commands"_Section_howto.html#4_15.  The scalar value calculated by
+this fix is "extensive", meaning it scales with the number of atoms in
+the simulation.
 
 This fix can ramp its target temperature over multiple runs, using the
 {start} and {stop} keywords of the "run"_run.html command.  See the

doc/fix_nvt_sllod.html

@@ -141,9 +141,11 @@ fix to add the energy change induced by Nose/Hoover thermostatting to
 the system's potential energy as part of <A HREF = "thermo_style.html">thermodynamic
 output</A>.
 </P>
-<P>The potential energy change due to this fix is stored as a scalar
+<P>The cummulative energy change due to this fix is stored as a scalar
 quantity, which can be accessed by various <A HREF = "Section_howto.html#4_15">output
-commands</A>.
+commands</A>.  The scalar value calculated by
+this fix is "extensive", meaning it scales with the number of atoms in
+the simulation.
 </P>
 <P>This fix can ramp its target temperature over multiple runs, using the
 <I>start</I> and <I>stop</I> keywords of the <A HREF = "run.html">run</A> command.  See the

doc/fix_nvt_sllod.txt

@@ -132,9 +132,11 @@ fix to add the energy change induced by Nose/Hoover thermostatting to
 the system's potential energy as part of "thermodynamic
 output"_thermo_style.html.
 
-The potential energy change due to this fix is stored as a scalar
+The cummulative energy change due to this fix is stored as a scalar
 quantity, which can be accessed by various "output
-commands"_Section_howto.html#4_15.
+commands"_Section_howto.html#4_15.  The scalar value calculated by
+this fix is "extensive", meaning it scales with the number of atoms in
+the simulation.
 
 This fix can ramp its target temperature over multiple runs, using the
 {start} and {stop} keywords of the "run"_run.html command.  See the

doc/fix_nvt_sphere.html

@@ -125,9 +125,11 @@ fix to add the energy change induced by Nose/Hoover thermostatting to
 the system's potential energy as part of <A HREF = "thermo_style.html">thermodynamic
 output</A>.
 </P>
-<P>The potential energy change due to this fix is stored as a scalar
+<P>The cummulative energy change due to this fix is stored as a scalar
 quantity, which can be accessed by various <A HREF = "Section_howto.html#4_15">output
-commands</A>.
+commands</A>.  The scalar value calculated by
+this fix is "extensive", meaning it scales with the number of atoms in
+the simulation.
 </P>
 <P>This fix can ramp its target temperature over multiple runs, using the
 <I>start</I> and <I>stop</I> keywords of the <A HREF = "run.html">run</A> command.  See the

doc/fix_nvt_sphere.txt

@@ -116,9 +116,11 @@ fix to add the energy change induced by Nose/Hoover thermostatting to
 the system's potential energy as part of "thermodynamic
 output"_thermo_style.html.
 
-The potential energy change due to this fix is stored as a scalar
+The cummulative energy change due to this fix is stored as a scalar
 quantity, which can be accessed by various "output
-commands"_Section_howto.html#4_15.
+commands"_Section_howto.html#4_15.  The scalar value calculated by
+this fix is "extensive", meaning it scales with the number of atoms in
+the simulation.
 
 This fix can ramp its target temperature over multiple runs, using the
 {start} and {stop} keywords of the "run"_run.html command.  See the

doc/fix_temp_rescale.html

@@ -114,20 +114,14 @@ this fix and by the compute should be the same.
 <P>The <A HREF = "fix_modify.html">fix_modify</A> <I>energy</I> option is supported by this
 fix to add the energy change implied by a velocity rescaling to the
 system's potential energy as part of <A HREF = "thermo_style.html">thermodynamic
-output</A>.  Note that because this fix is invoked
-every N steps and thermodynamic info is printed every M steps, that
-unless M is a multiple of N, the energy contribution will be zero.
+output</A>.
 </P>
-<P>The potential energy change due to this fix is stored as a scalar
+<P>The cummulative energy change due to this fix is stored as a scalar
 quantity, which can be accessed by various <A HREF = "Section_howto.html#4_15">output
 commands</A>.  The scalar value calculated by
 this fix is "extensive", meaning it scales with the number of atoms in
 the simulation.
 </P>
-<P>The energy change can be printed as part of thermodynamic output via
-the keyword f_ID, where ID is the fix-ID of this fix.  See the
-<A HREF = "thermo_style.html">thermo_style custom</A> command for details.
-</P>
 <P>This fix can ramp its target temperature over multiple runs, using the
 <I>start</I> and <I>stop</I> keywords of the <A HREF = "run.html">run</A> command.  See the
 <A HREF = "run.html">run</A> command for details of how to do this.

doc/fix_temp_rescale.txt

@@ -111,20 +111,14 @@ this fix and by the compute should be the same.
 The "fix_modify"_fix_modify.html {energy} option is supported by this
 fix to add the energy change implied by a velocity rescaling to the
 system's potential energy as part of "thermodynamic
-output"_thermo_style.html.  Note that because this fix is invoked
-every N steps and thermodynamic info is printed every M steps, that
-unless M is a multiple of N, the energy contribution will be zero.
+output"_thermo_style.html.
 
-The potential energy change due to this fix is stored as a scalar
+The cummulative energy change due to this fix is stored as a scalar
 quantity, which can be accessed by various "output
 commands"_Section_howto.html#4_15.  The scalar value calculated by
 this fix is "extensive", meaning it scales with the number of atoms in
 the simulation.
 
-The energy change can be printed as part of thermodynamic output via
-the keyword f_ID, where ID is the fix-ID of this fix.  See the
-"thermo_style custom"_thermo_style.html command for details.
-
 This fix can ramp its target temperature over multiple runs, using the
 {start} and {stop} keywords of the "run"_run.html command.  See the
 "run"_run.html command for details of how to do this.