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git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@7186 f3b2605a-c512-4ea7-a41b-209d697bcdaa

This commit is contained in:
sjplimp 2011-10-25 15:07:42 +00:00
parent 424fd114d7
commit ac624c1f82
8 changed files with 23 additions and 22 deletions
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2
doc/Section_accelerate.html
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@ -150,7 +150,7 @@ it as follows:
</P> </P>
<PRE>env OMP_NUM_THREADS=4 lmp_serial -sf omp -in in.script <PRE>env OMP_NUM_THREADS=4 lmp_serial -sf omp -in in.script
env OMP_NUM_THREADS=2 mpirun -np 2 lmp_machine -sf omp -in in.script env OMP_NUM_THREADS=2 mpirun -np 2 lmp_machine -sf omp -in in.script
mpirun -x OMP_NUM_THRADS=2 -np 2 lmp_machine -sf omp -in in.script mpirun -x OMP_NUM_THREADS=2 -np 2 lmp_machine -sf omp -in in.script
</PRE> </PRE>
<P>The value of the environment variable OMP_NUM_THREADS determines how <P>The value of the environment variable OMP_NUM_THREADS determines how
many threads per MPI task are launched. All three examples above use many threads per MPI task are launched. All three examples above use

2
doc/Section_accelerate.txt
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@ -145,7 +145,7 @@ it as follows:
env OMP_NUM_THREADS=4 lmp_serial -sf omp -in in.script env OMP_NUM_THREADS=4 lmp_serial -sf omp -in in.script
env OMP_NUM_THREADS=2 mpirun -np 2 lmp_machine -sf omp -in in.script env OMP_NUM_THREADS=2 mpirun -np 2 lmp_machine -sf omp -in in.script
mpirun -x OMP_NUM_THRADS=2 -np 2 lmp_machine -sf omp -in in.script :pre mpirun -x OMP_NUM_THREADS=2 -np 2 lmp_machine -sf omp -in in.script :pre
The value of the environment variable OMP_NUM_THREADS determines how The value of the environment variable OMP_NUM_THREADS determines how
many threads per MPI task are launched. All three examples above use many threads per MPI task are launched. All three examples above use

6
doc/Section_commands.html
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@ -438,9 +438,9 @@ package</A>.
<DIV ALIGN=center><TABLE BORDER=1 > <DIV ALIGN=center><TABLE BORDER=1 >
<TR ALIGN="center"><TD ><A HREF = "pair_awpmd.html">awpmd/cut</A></TD><TD ><A HREF = "pair_buck_coul.html">buck/coul</A></TD><TD ><A HREF = "pair_cmm.html">cg/cmm</A></TD><TD ><A HREF = "pair_cmm.html">cg/cmm/coul/cut</A></TD></TR> <TR ALIGN="center"><TD ><A HREF = "pair_awpmd.html">awpmd/cut</A></TD><TD ><A HREF = "pair_buck_coul.html">buck/coul</A></TD><TD ><A HREF = "pair_cmm.html">cg/cmm</A></TD><TD ><A HREF = "pair_cmm.html">cg/cmm/coul/cut</A></TD></TR>
<TR ALIGN="center"><TD ><A HREF = "pair_cmm.html">cg/cmm/coul/long</A></TD><TD ><A HREF = "pair_dipole.html">dipole/sf</A></TD><TD ><A HREF = "pair_eam.html">eam/cd</A></TD><TD ><A HREF = "pair_edip.html">edip</A></TD></TR> <TR ALIGN="center"><TD ><A HREF = "pair_cmm.html">cg/cmm/coul/long</A></TD><TD ><A HREF = "pair_dipole.html">dipole/sf</A></TD><TD ><A HREF = "pair_eam.html">eam/cd</A></TD><TD ><A HREF = "pair_edip.html">edip</A></TD></TR>
<TR ALIGN="center"><TD ><A HREF = "pair_eff.html">eff/cut</A></TD><TD ><A HREF = "pair_lj_coul.html">lj/coul</A></TD><TD ><A HREF = "pair_lj_sf.html">lj/sf</A></TD><TD ><A HREF = "pair_reax_c.html">reax/c</A><A HREF = "pair_heatconduction.html">sph/heatconduction</A></TD></TR> <TR ALIGN="center"><TD ><A HREF = "pair_eff.html">eff/cut</A></TD><TD ><A HREF = "pair_lj_coul.html">lj/coul</A></TD><TD ><A HREF = "pair_lj_sf.html">lj/sf</A></TD><TD ><A HREF = "pair_reax_c.html">reax/c</A></TD></TR>
<TR ALIGN="center"><TD ><A HREF = "pair_idealgas.html">sph/idealgas</A></TD><TD ><A HREF = "pair_lj.html">sph/lj</A></TD><TD ><A HREF = "pair_rhosum.html">sph/rhosum</A></TD><TD ><A HREF = "pair_taitwater.html">sph/taitwater</A></TD></TR> <TR ALIGN="center"><TD ><A HREF = "pair_heatconduction.html">sph/heatconduction</A></TD><TD ><A HREF = "pair_idealgas.html">sph/idealgas</A></TD><TD ><A HREF = "pair_lj.html">sph/lj</A></TD><TD ><A HREF = "pair_rhosum.html">sph/rhosum</A></TD></TR>
<TR ALIGN="center"><TD ><A HREF = "pair_taitwater_morris.html">sph/taitwater/morris</A> <TR ALIGN="center"><TD ><A HREF = "pair_taitwater.html">sph/taitwater</A></TD><TD ><A HREF = "pair_taitwater_morris.html">sph/taitwater/morris</A>
</TD></TR></TABLE></DIV> </TD></TR></TABLE></DIV>
<P>These are accelerated pair styles, which can be used if LAMMPS is <P>These are accelerated pair styles, which can be used if LAMMPS is

2
doc/Section_commands.txt
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@ -695,7 +695,7 @@ package"_Section_start.html#start_3.
"eff/cut"_pair_eff.html, "eff/cut"_pair_eff.html,
"lj/coul"_pair_lj_coul.html, "lj/coul"_pair_lj_coul.html,
"lj/sf"_pair_lj_sf.html, "lj/sf"_pair_lj_sf.html,
"reax/c"_pair_reax_c.html "reax/c"_pair_reax_c.html,
"sph/heatconduction"_pair_heatconduction.html, "sph/heatconduction"_pair_heatconduction.html,
"sph/idealgas"_pair_idealgas.html, "sph/idealgas"_pair_idealgas.html,
"sph/lj"_pair_lj.html, "sph/lj"_pair_lj.html,

8
doc/fix_wall_reflect.html
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@ -105,16 +105,16 @@ in a time-dependent fashion using equal-style
<A HREF = "variable.html">variables</A>. <A HREF = "variable.html">variables</A>.
</P> </P>
<PRE>variable ramp equal ramp(0,10) <PRE>variable ramp equal ramp(0,10)
fix 1 all wall xlo v_ramp 1.0 1.0 2.5 fix 1 all wall/reflect xlo v_ramp
</PRE> </PRE>
<PRE>variable linear equal vlinear(0,20) <PRE>variable linear equal vlinear(0,20)
fix 1 all wall xlo v_linear 1.0 1.0 2.5 fix 1 all wall/reflect xlo v_linear
</PRE> </PRE>
<PRE>variable wiggle equal swiggle(0.0,5.0,3.0) <PRE>variable wiggle equal swiggle(0.0,5.0,3.0)
fix 1 all wall xlo v_wiggle 1.0 1.0 2.5 fix 1 all wall/reflect xlo v_wiggle
</PRE> </PRE>
<PRE>variable wiggle equal cwiggle(0.0,5.0,3.0) <PRE>variable wiggle equal cwiggle(0.0,5.0,3.0)
fix 1 all wall xlo v_wiggle 1.0 1.0 2.5 fix 1 all wall/reflect xlo v_wiggle
</PRE> </PRE>
<P>The ramp(lo,hi) function adjusts the wall position linearly from lo to <P>The ramp(lo,hi) function adjusts the wall position linearly from lo to
hi over the course of a run. The linear(c0,velocity) function does hi over the course of a run. The linear(c0,velocity) function does

8
doc/fix_wall_reflect.txt
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@ -94,16 +94,16 @@ in a time-dependent fashion using equal-style
"variables"_variable.html. "variables"_variable.html.
variable ramp equal ramp(0,10) variable ramp equal ramp(0,10)
fix 1 all wall xlo v_ramp :pre fix 1 all wall/reflect xlo v_ramp :pre
variable linear equal vlinear(0,20) variable linear equal vlinear(0,20)
fix 1 all wall xlo v_linear :pre fix 1 all wall/reflect xlo v_linear :pre
variable wiggle equal swiggle(0.0,5.0,3.0) variable wiggle equal swiggle(0.0,5.0,3.0)
fix 1 all wall xlo v_wiggle :pre fix 1 all wall/reflect xlo v_wiggle :pre
variable wiggle equal cwiggle(0.0,5.0,3.0) variable wiggle equal cwiggle(0.0,5.0,3.0)
fix 1 all wall xlo v_wiggle :pre fix 1 all wall/reflect xlo v_wiggle :pre
The ramp(lo,hi) function adjusts the wall position linearly from lo to The ramp(lo,hi) function adjusts the wall position linearly from lo to
hi over the course of a run. The linear(c0,velocity) function does hi over the course of a run. The linear(c0,velocity) function does

8
doc/fix_wall_srd.html
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@ -139,16 +139,16 @@ in a time-dependent fashion using equal-style
<A HREF = "variable.html">variables</A>. <A HREF = "variable.html">variables</A>.
</P> </P>
<PRE>variable ramp equal ramp(0,10) <PRE>variable ramp equal ramp(0,10)
fix 1 all wall xlo v_ramp 1.0 1.0 2.5 fix 1 all wall/srd xlo v_ramp
</PRE> </PRE>
<PRE>variable linear equal vlinear(0,20) <PRE>variable linear equal vlinear(0,20)
fix 1 all wall xlo v_linear 1.0 1.0 2.5 fix 1 all wall/srd xlo v_linear
</PRE> </PRE>
<PRE>variable wiggle equal swiggle(0.0,5.0,3.0) <PRE>variable wiggle equal swiggle(0.0,5.0,3.0)
fix 1 all wall xlo v_wiggle 1.0 1.0 2.5 fix 1 all wall/srd xlo v_wiggle
</PRE> </PRE>
<PRE>variable wiggle equal cwiggle(0.0,5.0,3.0) <PRE>variable wiggle equal cwiggle(0.0,5.0,3.0)
fix 1 all wall xlo v_wiggle 1.0 1.0 2.5 fix 1 all wall/srd xlo v_wiggle
</PRE> </PRE>
<P>The ramp(lo,hi) function adjusts the wall position linearly from lo to <P>The ramp(lo,hi) function adjusts the wall position linearly from lo to
hi over the course of a run. The linear(c0,velocity) function does hi over the course of a run. The linear(c0,velocity) function does

9
doc/fix_wall_srd.txt
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@ -127,17 +127,18 @@ Here are examples of variable definitions that move the wall position
in a time-dependent fashion using equal-style in a time-dependent fashion using equal-style
"variables"_variable.html. "variables"_variable.html.
variable ramp equal ramp(0,10) variable ramp equal ramp(0,10)
fix 1 all wall xlo v_ramp 1.0 1.0 2.5 :pre fix 1 all wall/srd xlo v_ramp :pre
variable linear equal vlinear(0,20) variable linear equal vlinear(0,20)
fix 1 all wall xlo v_linear 1.0 1.0 2.5 :pre fix 1 all wall/srd xlo v_linear :pre
variable wiggle equal swiggle(0.0,5.0,3.0) variable wiggle equal swiggle(0.0,5.0,3.0)
fix 1 all wall xlo v_wiggle 1.0 1.0 2.5 :pre fix 1 all wall/srd xlo v_wiggle :pre
variable wiggle equal cwiggle(0.0,5.0,3.0) variable wiggle equal cwiggle(0.0,5.0,3.0)
fix 1 all wall xlo v_wiggle 1.0 1.0 2.5 :pre fix 1 all wall/srd xlo v_wiggle :pre
The ramp(lo,hi) function adjusts the wall position linearly from lo to The ramp(lo,hi) function adjusts the wall position linearly from lo to
hi over the course of a run. The linear(c0,velocity) function does hi over the course of a run. The linear(c0,velocity) function does