From abf05eed6171da7d93b7d81f5224b7827424a946 Mon Sep 17 00:00:00 2001 From: Steve Plimpton Date: Fri, 16 Sep 2016 10:31:52 -0600 Subject: [PATCH] comm tiled bug fix --- doc/html/Manual.html | 2 +- doc/html/Section_commands.html | 2 +- doc/html/Section_errors.html | 2 +- doc/html/Section_history.html | 2 +- doc/html/Section_intro.html | 2 +- doc/html/Section_modify.html | 2 +- doc/html/Section_packages.html | 2 +- doc/html/Section_start.html | 2 +- doc/html/Section_tools.html | 4 +- doc/html/accelerate_gpu.html | 2 +- doc/html/accelerate_kokkos.html | 2 +- doc/html/accelerate_omp.html | 2 +- doc/html/accelerate_opt.html | 2 +- doc/html/angle_table.html | 2 +- doc/html/atom_style.html | 2 +- doc/html/body.html | 10 ++--- doc/html/bond_table.html | 6 +-- doc/html/boundary.html | 2 +- doc/html/change_box.html | 2 +- doc/html/compute_ackland_atom.html | 2 +- doc/html/compute_angmom_chunk.html | 2 +- doc/html/compute_basal_atom.html | 2 +- doc/html/compute_body_local.html | 2 +- doc/html/compute_chunk_atom.html | 2 +- doc/html/compute_cluster_atom.html | 2 +- doc/html/compute_com_chunk.html | 2 +- doc/html/compute_contact_atom.html | 2 +- doc/html/compute_coord_atom.html | 2 +- doc/html/compute_damage_atom.html | 2 +- doc/html/compute_dipole_chunk.html | 2 +- doc/html/compute_displace_atom.html | 2 +- doc/html/compute_dpd_atom.html | 2 +- doc/html/compute_erotate_asphere.html | 2 +- doc/html/compute_erotate_rigid.html | 2 +- doc/html/compute_erotate_sphere.html | 2 +- doc/html/compute_erotate_sphere_atom.html | 2 +- doc/html/compute_event_displace.html | 2 +- doc/html/compute_inertia_chunk.html | 2 +- doc/html/compute_ke.html | 2 +- doc/html/compute_ke_atom.html | 2 +- doc/html/compute_ke_atom_eff.html | 2 +- doc/html/compute_ke_eff.html | 2 +- doc/html/compute_ke_rigid.html | 2 +- doc/html/compute_meso_e_atom.html | 2 +- doc/html/compute_meso_rho_atom.html | 2 +- doc/html/compute_meso_t_atom.html | 2 +- doc/html/compute_msd_chunk.html | 2 +- doc/html/compute_msd_nongauss.html | 16 +++----- doc/html/compute_omega_chunk.html | 2 +- doc/html/compute_pe.html | 2 +- doc/html/compute_pe_atom.html | 2 +- doc/html/compute_property_chunk.html | 2 +- doc/html/compute_rdf.html | 2 +- doc/html/compute_reduce.html | 2 +- doc/html/compute_saed.html | 22 ++++------- doc/html/compute_smd_contact_radius.html | 2 +- .../compute_smd_triangle_mesh_vertices.html | 2 +- doc/html/compute_smd_ulsph_num_neighs.html | 2 +- doc/html/compute_smd_ulsph_strain.html | 2 +- doc/html/compute_smd_ulsph_strain_rate.html | 2 +- doc/html/compute_smd_ulsph_stress.html | 2 +- doc/html/compute_temp.html | 2 +- doc/html/compute_temp_chunk.html | 2 +- doc/html/compute_temp_cs.html | 2 +- doc/html/compute_temp_partial.html | 2 +- doc/html/compute_ti.html | 2 +- doc/html/compute_torque_chunk.html | 2 +- doc/html/compute_vcm_chunk.html | 2 +- doc/html/compute_voronoi_atom.html | 2 +- doc/html/create_atoms.html | 18 ++++----- doc/html/create_box.html | 2 +- doc/html/dihedral_coeff.html | 2 +- doc/html/dihedral_table.html | 2 +- doc/html/dimension.html | 2 +- doc/html/dump.html | 2 +- doc/html/dump_custom_vtk.html | 2 +- doc/html/fix_addforce.html | 2 +- doc/html/fix_ave_chunk.html | 2 +- doc/html/fix_aveforce.html | 2 +- doc/html/fix_box_relax.html | 10 ++--- doc/html/fix_controller.html | 34 +++++++---------- doc/html/fix_deform.html | 2 +- doc/html/fix_ehex.html | 22 ++++------- doc/html/fix_enforce2d.html | 2 +- doc/html/fix_freeze.html | 2 +- doc/html/fix_gld.html | 31 ++++++---------- doc/html/fix_gle.html | 2 +- doc/html/fix_gravity.html | 2 +- doc/html/fix_ipi.html | 2 +- doc/html/fix_langevin.html | 6 +-- doc/html/fix_lb_fluid.html | 30 ++++++--------- doc/html/fix_lb_rigid_pc_sphere.html | 4 +- doc/html/fix_neb.html | 2 +- doc/html/fix_nph_asphere.html | 2 +- doc/html/fix_nph_body.html | 2 +- doc/html/fix_nph_sphere.html | 2 +- doc/html/fix_npt_asphere.html | 2 +- doc/html/fix_npt_body.html | 2 +- doc/html/fix_npt_sphere.html | 2 +- doc/html/fix_nve.html | 2 +- doc/html/fix_nve_asphere.html | 2 +- doc/html/fix_nve_body.html | 2 +- doc/html/fix_nve_line.html | 2 +- doc/html/fix_nve_manifold_rattle.html | 2 +- doc/html/fix_nve_sphere.html | 2 +- doc/html/fix_nve_tri.html | 2 +- doc/html/fix_nvt_asphere.html | 2 +- doc/html/fix_nvt_body.html | 2 +- doc/html/fix_nvt_manifold_rattle.html | 2 +- doc/html/fix_nvt_sllod.html | 2 +- doc/html/fix_nvt_sphere.html | 2 +- doc/html/fix_pimd.html | 16 +++----- doc/html/fix_qbmsst.html | 22 ++++------- doc/html/fix_qeq_comb.html | 2 +- doc/html/fix_qeq_reax.html | 2 +- doc/html/fix_restrain.html | 16 +++----- doc/html/fix_rigid.html | 2 +- doc/html/fix_setforce.html | 2 +- doc/html/fix_shardlow.html | 2 +- doc/html/fix_ti_rs.html | 19 ++++------ doc/html/fix_ttm.html | 21 +++++------ doc/html/fix_tune_kspace.html | 2 +- doc/html/fix_viscosity.html | 2 +- doc/html/fix_wall.html | 24 +++++------- doc/html/fix_wall_gran.html | 31 ++++++++-------- doc/html/fix_wall_reflect.html | 2 +- doc/html/fix_wall_region.html | 36 +++++++++--------- doc/html/group.html | 2 +- doc/html/if.html | 2 +- doc/html/kspace_style.html | 2 +- doc/html/log.html | 2 +- doc/html/molecule.html | 2 +- doc/html/pair_eff.html | 10 ++--- doc/html/pair_hybrid.html | 2 +- doc/html/pair_list.html | 16 +++----- doc/html/pair_mdf.html | 10 ++--- doc/html/pair_peri.html | 2 +- doc/html/pair_reax_c.html | 2 +- doc/html/pair_smtbq.html | 2 +- doc/html/pair_srp.html | 19 ++++------ doc/html/pair_table.html | 4 +- doc/html/pair_thole.html | 6 +-- doc/html/partition.html | 2 +- doc/html/prd.html | 2 +- doc/html/read_data.html | 2 +- doc/html/read_restart.html | 2 +- doc/html/region.html | 2 +- doc/html/run_style.html | 2 +- doc/html/tad.html | 2 +- doc/html/temper.html | 2 +- doc/html/thermo_style.html | 2 +- doc/src/Manual.txt | 4 +- doc/src/fix_wall_gran.txt | 31 ++++++++-------- doc/src/fix_wall_region.txt | 37 ++++++++++--------- src/comm_brick.cpp | 3 ++ src/comm_tiled.cpp | 30 ++++----------- src/math_const.h | 1 + src/version.h | 2 +- 158 files changed, 366 insertions(+), 453 deletions(-) diff --git a/doc/html/Manual.html b/doc/html/Manual.html index f4bba86437..542a280fc4 100644 --- a/doc/html/Manual.html +++ b/doc/html/Manual.html @@ -148,7 +148,7 @@

LAMMPS Documentation

-

13 Sep 2016 version

+

15 Sep 2016 version

Version info:

diff --git a/doc/html/Section_commands.html b/doc/html/Section_commands.html index 46d36a2f80..950cea475c 100644 --- a/doc/html/Section_commands.html +++ b/doc/html/Section_commands.html @@ -111,7 +111,7 @@
  • Fixes
  • Computes
  • Pair Styles
    • -
  • Bonds
    • +
  • Bond Styles
  • Angle Styles
  • Dihedral Styles
  • Improper Styles
    • diff --git a/doc/html/Section_errors.html b/doc/html/Section_errors.html index 4d9117835a..fdb88b5fc8 100644 --- a/doc/html/Section_errors.html +++ b/doc/html/Section_errors.html @@ -103,7 +103,7 @@
  • Fixes
  • Computes
  • Pair Styles
    • -
  • Bonds
    • +
  • Bond Styles
  • Angle Styles
  • Dihedral Styles
  • Improper Styles
    • diff --git a/doc/html/Section_history.html b/doc/html/Section_history.html index f82025aae0..a4aec8e07b 100644 --- a/doc/html/Section_history.html +++ b/doc/html/Section_history.html @@ -100,7 +100,7 @@
  • Fixes
  • Computes
  • Pair Styles
    • -
  • Bonds
    • +
  • Bond Styles
  • Angle Styles
  • Dihedral Styles
  • Improper Styles
    • diff --git a/doc/html/Section_intro.html b/doc/html/Section_intro.html index 97b2284384..4220096952 100644 --- a/doc/html/Section_intro.html +++ b/doc/html/Section_intro.html @@ -116,7 +116,7 @@
  • Fixes
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  • Pair Styles
    • -
  • Bonds
    • +
  • Bond Styles
  • Angle Styles
  • Dihedral Styles
  • Improper Styles
    • diff --git a/doc/html/Section_modify.html b/doc/html/Section_modify.html index d3389a3f28..424bda7033 100644 --- a/doc/html/Section_modify.html +++ b/doc/html/Section_modify.html @@ -113,7 +113,7 @@
  • Fixes
  • Computes
  • Pair Styles
    • -
  • Bonds
    • +
  • Bond Styles
  • Angle Styles
  • Dihedral Styles
  • Improper Styles
    • diff --git a/doc/html/Section_packages.html b/doc/html/Section_packages.html index d95e77ffe5..7638db57c9 100644 --- a/doc/html/Section_packages.html +++ b/doc/html/Section_packages.html @@ -161,7 +161,7 @@
  • Fixes
  • Computes
  • Pair Styles
    • -
  • Bonds
    • +
  • Bond Styles
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  • Dihedral Styles
  • Improper Styles
    • diff --git a/doc/html/Section_start.html b/doc/html/Section_start.html index 21f3077351..9b5f633420 100644 --- a/doc/html/Section_start.html +++ b/doc/html/Section_start.html @@ -142,7 +142,7 @@
  • Fixes
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    • -
  • Bonds
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    • diff --git a/doc/html/Section_tools.html b/doc/html/Section_tools.html index 1132f70112..1fd87016c3 100644 --- a/doc/html/Section_tools.html +++ b/doc/html/Section_tools.html @@ -129,7 +129,7 @@
  • Fixes
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    • -
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    • @@ -217,7 +217,7 @@ own sub-directories with their own Makefiles.

  • eff
  • emacs
  • fep
    • -
  • i-pi
    • +
  • i-pi
  • ipp
  • kate
  • lmp2arc
    • diff --git a/doc/html/accelerate_gpu.html b/doc/html/accelerate_gpu.html index b0dda8d648..3b3167d1d8 100644 --- a/doc/html/accelerate_gpu.html +++ b/doc/html/accelerate_gpu.html @@ -113,7 +113,7 @@
  • Fixes
  • Computes
  • Pair Styles
    • -
  • Bonds
    • +
  • Bond Styles
  • Angle Styles
  • Dihedral Styles
  • Improper Styles
    • diff --git a/doc/html/accelerate_kokkos.html b/doc/html/accelerate_kokkos.html index 61fd4b4dfc..8dcc748188 100644 --- a/doc/html/accelerate_kokkos.html +++ b/doc/html/accelerate_kokkos.html @@ -113,7 +113,7 @@
  • Fixes
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  • Improper Styles
    • diff --git a/doc/html/accelerate_omp.html b/doc/html/accelerate_omp.html index e317faf9df..eff5c2f3fd 100644 --- a/doc/html/accelerate_omp.html +++ b/doc/html/accelerate_omp.html @@ -113,7 +113,7 @@
  • Fixes
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  • Pair Styles
    • -
  • Bonds
    • +
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  • Dihedral Styles
  • Improper Styles
    • diff --git a/doc/html/accelerate_opt.html b/doc/html/accelerate_opt.html index 5e06207034..c6e2996dbc 100644 --- a/doc/html/accelerate_opt.html +++ b/doc/html/accelerate_opt.html @@ -113,7 +113,7 @@
  • Fixes
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    • -
  • Bonds
    • +
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  • Improper Styles
    • diff --git a/doc/html/angle_table.html b/doc/html/angle_table.html index ab9dc197e7..68c29b3b6c 100644 --- a/doc/html/angle_table.html +++ b/doc/html/angle_table.html @@ -97,7 +97,7 @@
  • Fixes
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    • -
  • Bonds
    • +
  • Bond Styles
  • Angle Styles
  • Commands
  • Fixes
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  • Improper Styles
    • @@ -146,7 +146,7 @@