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git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5325 f3b2605a-c512-4ea7-a41b-209d697bcdaa

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sjplimp 2010-11-24 22:33:39 +00:00
parent 182c275000
commit a7ecf17859
2 changed files with 19 additions and 9 deletions
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14
doc/Section_python.html
View File

@ -609,14 +609,14 @@ distribution.
<TR><TD >gui.py</TD><TD > GUI go/stop/temperature-slider to control LAMMPS</TD></TR>
<TR><TD >plot.py</TD><TD > real-time temeperature plot with GnuPlot via Pizza.py</TD></TR>
<TR><TD >viz_tool.py</TD><TD > real-time viz via some viz package</TD></TR>
<TR><TD >vizplotgui_tool.py</TD><TD > combination of viz.py and plot.py and gui.py
<TR><TD >vizplotgui_tool.py</TD><TD > combination of viz_tool.py and plot.py and gui.py
</TD></TR></TABLE></DIV>
<HR>
<P>For the viz_tool.py and vizplotgui_tool.py commands, replace "tool"
with "gl" or "atomeye" or "pymol", depending on what visualization
package you have installed. We hope to add a VMD option soon.
with "gl" or "atomeye" or "pymol" or "vmd", depending on what
visualization package you have installed.
</P>
<P>Note that for GL, you need to be able to run the Pizza.py GL tool,
which is included in the pizza sub-directory. See the <A HREF = "http://www.sandia.gov/~sjplimp/pizza.html">Pizza.py doc
@ -624,7 +624,7 @@ pages</A> for more info:
</P>
<P>Note that for AtomEye, you need version 3, and their is a line in the
<P>Note that for AtomEye, you need version 3, and there is a line in the
scripts that specifies the path and name of the executable. See the
AtomEye WWW pages <A HREF = "http://mt.seas.upenn.edu/Archive/Graphics/A">here</A> or <A HREF = "http://mt.seas.upenn.edu/Archive/Graphics/A3/A3.html">here</A> for more details:
</P>
@ -652,6 +652,10 @@ http://sourceforge.net/scm/?type=svn&group_id=4546
<P>The latter link is to the open-source version.
</P>
<P>Note that for VMD, you need a fairly current version (1.8.7 works for
me) and there are some lines in the pizza/vmd.py script for 4 PIZZA
variables that have to match the VMD installation on your system.
</P>
<HR>
<P>See the python/README file for instructions on how to run them and the
@ -666,4 +670,6 @@ different visualization package options. Click to see larger images:
<A HREF = "JPG/screenshot_pymol.jpg"><IMG SRC = "JPG/screenshot_pymol_small.jpg"></A>
<A HREF = "JPG/screenshot_vmd.jpg"><IMG SRC = "JPG/screenshot_vmd_small.jpg"></A>
</HTML>

14
doc/Section_python.txt
View File

@ -602,13 +602,13 @@ simple.py, mimic operation of couple/simple/simple.cpp in Python,
gui.py, GUI go/stop/temperature-slider to control LAMMPS,
plot.py, real-time temeperature plot with GnuPlot via Pizza.py,
viz_tool.py, real-time viz via some viz package,
vizplotgui_tool.py, combination of viz.py and plot.py and gui.py :tb(c=2)
vizplotgui_tool.py, combination of viz_tool.py and plot.py and gui.py :tb(c=2)
:line
For the viz_tool.py and vizplotgui_tool.py commands, replace "tool"
with "gl" or "atomeye" or "pymol", depending on what visualization
package you have installed. We hope to add a VMD option soon.
with "gl" or "atomeye" or "pymol" or "vmd", depending on what
visualization package you have installed.
Note that for GL, you need to be able to run the Pizza.py GL tool,
which is included in the pizza sub-directory. See the "Pizza.py doc
@ -616,7 +616,7 @@ pages"_pizza for more info:
:link(pizza,http://www.sandia.gov/~sjplimp/pizza.html)
Note that for AtomEye, you need version 3, and their is a line in the
Note that for AtomEye, you need version 3, and there is a line in the
scripts that specifies the path and name of the executable. See the
AtomEye WWW pages "here"_atomeye or "here"_atomeye3 for more details:
@ -642,6 +642,10 @@ http://sourceforge.net/scm/?type=svn&group_id=4546 :pre
The latter link is to the open-source version.
Note that for VMD, you need a fairly current version (1.8.7 works for
me) and there are some lines in the pizza/vmd.py script for 4 PIZZA
variables that have to match the VMD installation on your system.
:line
See the python/README file for instructions on how to run them and the
@ -653,4 +657,4 @@ different visualization package options. Click to see larger images:
:image(JPG/screenshot_gl_small.jpg,JPG/screenshot_gl.jpg)
:image(JPG/screenshot_atomeye_small.jpg,JPG/screenshot_atomeye.jpg)
:image(JPG/screenshot_pymol_small.jpg,JPG/screenshot_pymol.jpg)
:image(JPG/screenshot_vmd_small.jpg,JPG/screenshot_vmd.jpg)