forked from lijiext/lammps
must not forget to generate compute ids and store them.
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1ea0eca2a5
commit
a5651acb49
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@ -582,8 +582,12 @@ void ComputeChunkAtom::init()
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// fixstore initializes all values to 0.0
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if ((idsflag == ONCE || lockcount) && !fixstore) {
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modify->add_fix(fmt::format("{}_COMPUTE_STORE {} STORE peratom 1 1",
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id,group->names[igroup]));
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std::string cmd = id + std::string("_COMPUTE_STORE");
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id_fix = new char[cmd.size()+1];
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strcpy(id_fix,cmd.c_str());
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cmd += fmt::format(" {} STORE peratom 1 1", group->names[igroup]);
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modify->add_fix(cmd);
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fixstore = (FixStore *) modify->fix[modify->nfix-1];
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}
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@ -73,8 +73,12 @@ ComputeDisplaceAtom::ComputeDisplaceAtom(LAMMPS *lmp, int narg, char **arg) :
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// create a new fix STORE style
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// id = compute-ID + COMPUTE_STORE, fix group = compute group
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modify->add_fix(fmt::format("{}_COMPUTE_STORE {} STORE peratom 1 3",
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id,group->names[igroup]));
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std::string cmd = id + std::string("_COMPUTE_STORE");
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id_fix = new char[cmd.size()+1];
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strcpy(id_fix,cmd.c_str());
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cmd += fmt::format(" {} STORE peratom 1 3", group->names[igroup]);
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modify->add_fix(cmd);
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fix = (FixStore *) modify->fix[modify->nfix-1];
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// calculate xu,yu,zu for fix store array
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@ -55,17 +55,12 @@ FixNumDiff::FixNumDiff(LAMMPS *lmp, int narg, char **arg) :
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if (nevery <= 0 || delta <= 0.0)
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error->all(FLERR,"Illegal fix numdiff command");
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int n = strlen(id) + 6;
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id_pe = new char[n];
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strcpy(id_pe,id);
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strcat(id_pe,"_pe");
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std::string cmd = id + std::string("_pe");
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id_pe = new char[cmd.size()+1];
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strcpy(id_pe,cmd.c_str());
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char **newarg = new char*[3];
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newarg[0] = id_pe;
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newarg[1] = (char *) "all";
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newarg[2] = (char *) "pe";
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modify->add_compute(3,newarg);
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delete [] newarg;
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cmd += " all pe";
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modify->add_compute(cmd);
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maxatom = 0;
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@ -14,6 +14,7 @@
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#include "fix_press_berendsen.h"
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#include <cstring>
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#include <cmath>
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#include <string>
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#include "atom.h"
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#include "force.h"
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#include "comm.h"
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@ -217,35 +218,24 @@ FixPressBerendsen::FixPressBerendsen(LAMMPS *lmp, int narg, char **arg) :
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// compute group = all since pressure is always global (group all)
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// and thus its KE/temperature contribution should use group all
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int n = strlen(id) + 6;
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id_temp = new char[n];
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strcpy(id_temp,id);
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strcat(id_temp,"_temp");
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std::string tcmd = id + std::string("_temp");
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id_temp = new char[tcmd.size()+1];
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strcpy(id_temp,tcmd.c_str());
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char **newarg = new char*[3];
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newarg[0] = id_temp;
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newarg[1] = (char *) "all";
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newarg[2] = (char *) "temp";
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modify->add_compute(3,newarg);
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delete [] newarg;
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tcmd += " all temp";
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modify->add_compute(tcmd);
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tflag = 1;
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// create a new compute pressure style
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// id = fix-ID + press, compute group = all
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// pass id_temp as 4th arg to pressure constructor
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n = strlen(id) + 7;
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id_press = new char[n];
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strcpy(id_press,id);
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strcat(id_press,"_press");
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std::string pcmd = id + std::string("_press");
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id_press = new char[pcmd.size()+1];
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strcpy(id_press,pcmd.c_str());
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newarg = new char*[4];
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newarg[0] = id_press;
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newarg[1] = (char *) "all";
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newarg[2] = (char *) "pressure";
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newarg[3] = id_temp;
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modify->add_compute(4,newarg);
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delete [] newarg;
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pcmd += " all pressure " + std::string(id_temp);
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modify->add_compute(pcmd);
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pflag = 1;
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nrigid = 0;
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@ -13,6 +13,7 @@
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#include "fix_temp_berendsen.h"
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#include <cstring>
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#include <string>
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#include <cmath>
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#include "atom.h"
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#include "force.h"
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@ -70,17 +71,12 @@ FixTempBerendsen::FixTempBerendsen(LAMMPS *lmp, int narg, char **arg) :
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// create a new compute temp style
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// id = fix-ID + temp, compute group = fix group
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int n = strlen(id) + 6;
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id_temp = new char[n];
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strcpy(id_temp,id);
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strcat(id_temp,"_temp");
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std::string cmd = id + std::string("_temp");
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id_temp = new char[cmd.size()+1];
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strcpy(id_temp,cmd.c_str());
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char **newarg = new char*[3];
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newarg[0] = id_temp;
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newarg[1] = group->names[igroup];
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newarg[2] = (char *) "temp";
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modify->add_compute(3,newarg);
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delete [] newarg;
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cmd += group->names[igroup] + std::string(" temp");
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modify->add_compute(cmd);
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tflag = 1;
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energy = 0;
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@ -17,6 +17,7 @@
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#include "fix_temp_csld.h"
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#include <cstring>
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#include <string>
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#include <cmath>
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#include "atom.h"
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#include "force.h"
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@ -79,17 +80,12 @@ FixTempCSLD::FixTempCSLD(LAMMPS *lmp, int narg, char **arg) :
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// create a new compute temp style
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// id = fix-ID + temp, compute group = fix group
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int n = strlen(id) + 6;
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id_temp = new char[n];
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strcpy(id_temp,id);
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strcat(id_temp,"_temp");
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std::string cmd = id + std::string("_temp");
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id_temp = new char[cmd.size()+1];
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strcpy(id_temp,cmd.c_str());
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char **newarg = new char*[3];
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newarg[0] = id_temp;
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newarg[1] = group->names[igroup];
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newarg[2] = (char *) "temp";
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modify->add_compute(3,newarg);
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delete [] newarg;
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cmd += group->names[igroup] + std::string(" temp");
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modify->add_compute(cmd);
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tflag = 1;
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vhold = NULL;
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@ -20,6 +20,7 @@
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#include <mpi.h>
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#include <cstring>
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#include <cmath>
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#include <string>
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#include "atom.h"
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#include "force.h"
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#include "comm.h"
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@ -156,17 +157,12 @@ FixTempCSVR::FixTempCSVR(LAMMPS *lmp, int narg, char **arg) :
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// create a new compute temp style
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// id = fix-ID + temp, compute group = fix group
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int n = strlen(id) + 6;
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id_temp = new char[n];
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strcpy(id_temp,id);
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strcat(id_temp,"_temp");
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std::string cmd = id + std::string("_temp");
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id_temp = new char[cmd.size()+1];
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strcpy(id_temp,cmd.c_str());
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char **newarg = new char*[3];
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newarg[0] = id_temp;
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newarg[1] = group->names[igroup];
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newarg[2] = (char *) "temp";
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modify->add_compute(3,newarg);
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delete [] newarg;
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cmd += group->names[igroup] + std::string(" temp");
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modify->add_compute(cmd);
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tflag = 1;
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nmax = -1;
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@ -13,6 +13,7 @@
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#include "fix_temp_rescale.h"
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#include <cstring>
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#include <string>
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#include <cmath>
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#include "atom.h"
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#include "force.h"
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@ -66,17 +67,12 @@ FixTempRescale::FixTempRescale(LAMMPS *lmp, int narg, char **arg) :
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// create a new compute temp
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// id = fix-ID + temp, compute group = fix group
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int n = strlen(id) + 6;
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id_temp = new char[n];
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strcpy(id_temp,id);
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strcat(id_temp,"_temp");
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std::string cmd = id + std::string("_temp");
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id_temp = new char[cmd.size()+1];
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strcpy(id_temp,cmd.c_str());
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char **newarg = new char*[6];
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newarg[0] = id_temp;
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newarg[1] = group->names[igroup];
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newarg[2] = (char *) "temp";
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modify->add_compute(3,newarg);
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delete [] newarg;
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cmd += group->names[igroup] + std::string(" temp");
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modify->add_compute(cmd);
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tflag = 1;
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energy = 0.0;
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