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git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13785 f3b2605a-c512-4ea7-a41b-209d697bcdaa
This commit is contained in:
sjplimp 2015-07-28 23:49:34 +00:00
parent 60334f9b72
commit a4af676937
8 changed files with 18 additions and 18 deletions
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8
doc/Section_python.html
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@ -850,7 +850,7 @@ variables that have to match the VMD installation on your system.</p>
source code for individual scripts for comments about what they do.</p>
<p>Here are screenshots of the vizplotgui_tool.py script in action for
different visualization package options. Click to see larger images:</p>
<a data-lightbox="group-471f42f4-09a2-4ede-a20b-a936fac66d51"
<a data-lightbox="group-a9e7c403-7974-4d0b-8735-23c81e15c71a"
href="_images/screenshot_gl.jpg"
class=""
title=""
@ -860,7 +860,7 @@ different visualization package options. Click to see larger images:</p>
width="25%"
height="auto"
alt=""/>
</a><a data-lightbox="group-7b3546ac-262b-4b14-965b-be6248eb6d13"
</a><a data-lightbox="group-ea8c6846-25f4-406a-b892-e93ba3c4c47d"
href="_images/screenshot_atomeye.jpg"
class=""
title=""
@ -870,7 +870,7 @@ different visualization package options. Click to see larger images:</p>
width="25%"
height="auto"
alt=""/>
</a><a data-lightbox="group-33cf83f7-5084-4237-9bb3-0f8f642c9073"
</a><a data-lightbox="group-8ca30431-95a2-4503-b487-ec804cd6bc64"
href="_images/screenshot_pymol.jpg"
class=""
title=""
@ -880,7 +880,7 @@ different visualization package options. Click to see larger images:</p>
width="25%"
height="auto"
alt=""/>
</a><a data-lightbox="group-34da1da2-45fe-4216-a06c-84976989f2b6"
</a><a data-lightbox="group-5dc72449-ae6a-4097-b7d7-8345723ca951"
href="_images/screenshot_vmd.jpg"
class=""
title=""

6
doc/balance.html
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@ -264,7 +264,7 @@ the processor that owns them. The leftmost diagram is the default
partitioning of the simulation box across processors (one sub-box for
each of 16 processors); the middle diagram is after a &#8220;grid&#8221; method
has been applied.</p>
<a data-lightbox="group-6e7c213c-b987-4061-8585-27da8657e31a"
<a data-lightbox="group-4258db90-e621-4e44-9c83-1cf30c922943"
href="_images/balance_uniform.jpg"
class=""
title=""
@ -274,7 +274,7 @@ has been applied.</p>
width="25%"
height="auto"
alt=""/>
</a><a data-lightbox="group-ddd51b74-c3a0-47b0-911d-532ebe682ab8"
</a><a data-lightbox="group-6d649e1e-c967-4535-9ee5-adf1a6dd0441"
href="_images/balance_nonuniform.jpg"
class=""
title=""
@ -284,7 +284,7 @@ has been applied.</p>
width="25%"
height="auto"
alt=""/>
</a><a data-lightbox="group-be056d80-767f-45c4-b836-a732c86d1282"
</a><a data-lightbox="group-904338c7-2dd0-431e-9a79-b28b1491e7fa"
href="_images/balance_rcb.jpg"
class=""
title=""

4
doc/compute_saed.html
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@ -181,7 +181,7 @@ position of each atom, fj are atomic scattering factors.</p>
reciprocal lattice nodes. The mesh spacing is defined either (a) by
the entire simulation domain or (b) manually using selected values as
shown in the 2D diagram below.</p>
<a data-lightbox="group-daea89e3-8273-4ecb-9619-5bdfbb8911ce"
<a data-lightbox="group-859ac43e-75ae-4f49-874a-2a263b260f7c"
href="_images/saed_mesh.jpg"
class=""
title=""
@ -218,7 +218,7 @@ intersecting Ewald sphere. Diffraction intensities will only be
computed at the intersection of the reciprocal lattice mesh and a
<em>dR_Ewald</em> thick surface of the Ewald sphere. See the example 3D
intestiety data and the intersection of a [010] zone axis in the below image.</p>
<a data-lightbox="group-15501aab-aa21-4ebd-b806-f3ef30fbe207"
<a data-lightbox="group-9dceef96-a5d7-4a5a-a1be-ffc3f0915bfa"
href="_images/saed_ewald_intersect.jpg"
class=""
title=""

2
doc/compute_xrd.html
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@ -184,7 +184,7 @@ the optional <em>LP</em> keyword.</p>
reciprocal lattice nodes. The mesh spacing is defined either (a)
by the entire simulation domain or (b) manually using selected values as
shown in the 2D diagram below.</p>
<a data-lightbox="group-13692fe7-8a16-4953-af8e-6c530dcccb1a"
<a data-lightbox="group-efdf0158-0490-4c1c-9de5-73e71fe9a0d7"
href="_images/xrd_mesh.jpg"
class=""
title=""

2
doc/create_atoms.html
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@ -340,7 +340,7 @@ variable v equal &quot;(0.2*v_y*ylat * cos(v_xx/xlat * 2.0*PI*4.0/v_x) +
create_atoms 1 box var v set x xx set y yy
</pre></div>
</div>
<a data-lightbox="group-ab24e3be-a47a-407d-af33-4b01db76c6a1"
<a data-lightbox="group-be1ae544-240e-475e-a49b-f8e2a3843f7c"
href="_images/sinusoid.jpg"
class=""
title=""

4
doc/dump_image.html
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@ -219,7 +219,7 @@ from an existing dump file, and using these dump commands in the rerun
script to generate the images/movie.</p>
<p>Here are two sample images, rendered as 1024x1024 JPEG files. Click
to see the full-size images:</p>
<DIV ALIGN=center><a data-lightbox="group-51fa2cc7-f548-4cad-8416-050b8c350eb6"
<DIV ALIGN=center><a data-lightbox="group-ff92fe3f-f719-4c57-9cea-113b9e9643e4"
href="_images/dump1.jpg"
class=""
title=""
@ -229,7 +229,7 @@ to see the full-size images:</p>
width="25%"
height="auto"
alt=""/>
</a><a data-lightbox="group-7df8ebec-fdc6-4e0f-bd1a-769bc9e5ffeb"
</a><a data-lightbox="group-a3858670-6500-41c1-b0c2-9f0272e3b692"
href="_images/dump2.jpg"
class=""
title=""

6
doc/fix_balance.html
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@ -236,7 +236,7 @@ that owns them. The leftmost diagram is the default partitioning of
the simulation box across processors (one sub-box for each of 16
processors); the middle diagram is after a &#8220;grid&#8221; method has been
applied.</p>
<a data-lightbox="group-be62a711-896a-43e3-9c19-a5af8154cac4"
<a data-lightbox="group-6cfe3c2b-ec17-45b8-b882-f783e4c2a19d"
href="_images/balance_uniform.jpg"
class=""
title=""
@ -246,7 +246,7 @@ applied.</p>
width="25%"
height="auto"
alt=""/>
</a><a data-lightbox="group-17ee0c91-2ef3-4cf9-8b74-e6df1df7708e"
</a><a data-lightbox="group-26d7be34-9b5e-4401-a2c6-88fc91c1752d"
href="_images/balance_nonuniform.jpg"
class=""
title=""
@ -256,7 +256,7 @@ applied.</p>
width="25%"
height="auto"
alt=""/>
</a><a data-lightbox="group-b94b0d56-eb6d-4f6a-983a-eeca125d3082"
</a><a data-lightbox="group-4465c3f8-8861-4930-b727-36407f0afa95"
href="_images/balance_rcb.jpg"
class=""
title=""

4
doc/neb.html
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@ -478,7 +478,7 @@ barrier.</p>
neb_combine.py script run on the dump files produced by the two
example input scripts in examples/neb. Click on them to see a larger
image.</p>
<a data-lightbox="group-0eb1e253-2977-45e3-863d-e69fe78196e9"
<a data-lightbox="group-775a2736-8a3a-4956-86d2-35673d20b418"
href="_images/hop1.jpg"
class=""
title=""
@ -488,7 +488,7 @@ image.</p>
width="25%"
height="auto"
alt=""/>
</a><a data-lightbox="group-fb58d79f-e00a-4e78-b97a-b1bff65370eb"
</a><a data-lightbox="group-4ce5ea0c-eb98-4f39-8800-51faa42bf985"
href="_images/hop2.jpg"
class=""
title=""