update manual links that got broken when removing and renumbering a section

doc/src/Manual.txt

@@ -261,7 +261,6 @@ END_RST -->
 :link(start_6,Section_start.html#start_6)
 :link(start_7,Section_start.html#start_7)
 :link(start_8,Section_start.html#start_8)
-:link(start_9,Section_start.html#start_9)
 
 :link(cmd_1,Section_commands.html#cmd_1)
 :link(cmd_2,Section_commands.html#cmd_2)

doc/src/Section_accelerate.txt

@@ -56,7 +56,7 @@ timings; you can simply extrapolate from short runs.
 
 For the set of runs, look at the timing data printed to the screen and
 log file at the end of each LAMMPS run.  "This
-section"_Section_start.html#start_8 of the manual has an overview.
+section"_Section_start.html#start_7 of the manual has an overview.
 
 Running on one (or a few processors) should give a good estimate of
 the serial performance and what portions of the timestep are taking
@@ -226,16 +226,16 @@ re-build LAMMPS |
   make machine |
 prepare and test a regular LAMMPS simulation |
   lmp_machine -in in.script; mpirun -np 32 lmp_machine -in in.script |
-enable specific accelerator support via '-k on' "command-line switch"_Section_start.html#start_7, |
+enable specific accelerator support via '-k on' "command-line switch"_Section_start.html#start_6, |
   only needed for KOKKOS package |
-set any needed options for the package via "-pk" "command-line switch"_Section_start.html#start_7 or "package"_package.html command, |
+set any needed options for the package via "-pk" "command-line switch"_Section_start.html#start_6 or "package"_package.html command, |
   only if defaults need to be changed |
-use accelerated styles in your input via "-sf" "command-line switch"_Section_start.html#start_7 or "suffix"_suffix.html command | lmp_machine -in in.script -sf gpu
+use accelerated styles in your input via "-sf" "command-line switch"_Section_start.html#start_6 or "suffix"_suffix.html command | lmp_machine -in in.script -sf gpu
 :tb(c=2,s=|)
 
 Note that the first 4 steps can be done as a single command, using the
 src/Make.py tool.  This tool is discussed in "Section
-2.4"_Section_start.html#start_4 of the manual, and its use is
+4"_Section_packages.html of the manual, and its use is
 illustrated in the individual accelerator sections.  Typically these
 steps only need to be done once, to create an executable that uses one
 or more accelerator packages.

doc/src/Section_errors.txt

@@ -71,7 +71,7 @@ style", with ... being fix, compute, pair, etc, it means that you
 mistyped the style name or that the command is part of an optional
 package which was not compiled into your executable.  The list of
 available styles in your executable can be listed by using "the -h
-command-line argument"_Section_start.html#start_7.  The installation
+command-line argument"_Section_start.html#start_6.  The installation
 and compilation of optional packages is explained in the "installation
 instructions"_Section_start.html#start_3.
 

doc/src/Section_howto.txt

@@ -54,7 +54,7 @@ restart files can be saved to disk using the "restart"_restart.html
 command.  At a later time, these binary files can be read via a
 "read_restart"_read_restart.html command in a new script.  Or they can
 be converted to text data files using the "-r command-line
-switch"_Section_start.html#start_7 and read by a
+switch"_Section_start.html#start_6 and read by a
 "read_data"_read_data.html command in a new script.
 
 Here we give examples of 2 scripts that read either a binary restart
@@ -337,7 +337,7 @@ All of the above examples work whether you are running on 1 or
 multiple processors, but assumed you are running LAMMPS on a single
 partition of processors.  LAMMPS can be run on multiple partitions via
 the "-partition" command-line switch as described in "this
-section"_Section_start.html#start_7 of the manual.
+section"_Section_start.html#start_6 of the manual.
 
 In the last 2 examples, if LAMMPS were run on 3 partitions, the same
 scripts could be used if the "index" and "loop" variables were
@@ -387,7 +387,7 @@ for more info on packages.
 In all these cases, you must run with one or more processors per
 replica.  The processors assigned to each replica are determined at
 run-time by using the "-partition command-line
-switch"_Section_start.html#start_7 to launch LAMMPS on multiple
+switch"_Section_start.html#start_6 to launch LAMMPS on multiple
 partitions, which in this context are the same as replicas.  E.g.
 these commands:
 
@@ -395,7 +395,7 @@ mpirun -np 16 lmp_linux -partition 8x2 -in in.temper
 mpirun -np 8 lmp_linux -partition 8x1 -in in.neb :pre
 
 would each run 8 replicas, on either 16 or 8 processors.  Note the use
-of the "-in command-line switch"_Section_start.html#start_7 to specify
+of the "-in command-line switch"_Section_start.html#start_6 to specify
 the input script which is required when running in multi-replica mode.
 
 Also note that with MPI installed on a machine (e.g. your desktop),
@@ -1872,7 +1872,7 @@ void lammps_free(void *) :pre
 
 The lammps_open() function is used to initialize LAMMPS, passing in a
 list of strings as if they were "command-line
-arguments"_Section_start.html#start_7 when LAMMPS is run in
+arguments"_Section_start.html#start_6 when LAMMPS is run in
 stand-alone mode from the command line, and a MPI communicator for
 LAMMPS to run under.  It returns a ptr to the LAMMPS object that is
 created, and which is used in subsequent library calls.  The

doc/src/Section_packages.txt

@@ -369,7 +369,7 @@ suffix in their style name.  "Section 5.3.1"_accelerate_gpu.html gives
 details of what hardware and Cuda software is required on your system,
 and details on how to build and use this package.  Its styles can be
 invoked at run time via the "-sf gpu" or "-suffix gpu" "command-line
-switches"_Section_start.html#start_7.  See also the "KOKKOS"_#KOKKOS
+switches"_Section_start.html#start_6.  See also the "KOKKOS"_#KOKKOS
 package, which has GPU-enabled styles.
 
 [Authors:] Mike Brown (Intel) while at Sandia and ORNL and Trung Nguyen
@@ -427,8 +427,8 @@ src/GPU/README
 lib/gpu/README
 "Section 5.3"_Section_accelerate.html#acc_3
 "Section 5.3.1"_accelerate_gpu.html
-"Section 2.7 -sf gpu"_Section_start.html#start_7
-"Section 2.7 -pk gpu"_Section_start.html#start_7
+"Section 2.6 -sf gpu"_Section_start.html#start_6
+"Section 2.6 -pk gpu"_Section_start.html#start_6
 "package gpu"_package.html
 Pair Styles section of "Section 3.5"_Section_commands.html#cmd_5 for pair styles followed by (g)
 "Benchmarks page"_http://lammps.sandia.gov/bench.html of web site :ul
@@ -529,7 +529,7 @@ style name.  "Section 5.3.3"_accelerate_kokkos.html gives details of
 what hardware and software is required on your system, and how to
 build and use this package.  Its styles can be invoked at run time via
 the "-sf kk" or "-suffix kk" "command-line
-switches"_Section_start.html#start_7.  Also see the "GPU"_#GPU,
+switches"_Section_start.html#start_6.  Also see the "GPU"_#GPU,
 "OPT"_#OPT, "USER-INTEL"_#USER-INTEL, and "USER-OMP"_#USER-OMP
 packages, which have styles optimized for CPUs, KNLs, and GPUs.
 
@@ -597,9 +597,9 @@ src/KOKKOS/README
 lib/kokkos/README
 "Section 5.3"_Section_accelerate.html#acc_3
 "Section 5.3.3"_accelerate_kokkos.html
-"Section 2.7 -k on ..."_Section_start.html#start_7
-"Section 2.7 -sf kk"_Section_start.html#start_7
-"Section 2.7 -pk kokkos"_Section_start.html#start_7
+"Section 2.6 -k on ..."_Section_start.html#start_6
+"Section 2.6 -sf kk"_Section_start.html#start_6
+"Section 2.6 -pk kokkos"_Section_start.html#start_6
 "package kokkos"_package.html
 Styles sections of "Section 3.5"_Section_commands.html#cmd_5 for styles followed by (k)
 "Benchmarks page"_http://lammps.sandia.gov/bench.html of web site :ul
@@ -926,7 +926,7 @@ CHARMM, and Morse potentials.  The styles have an "opt" suffix in
 their style name.  "Section 5.3.5"_accelerate_opt.html gives details
 of how to build and use this package.  Its styles can be invoked at
 run time via the "-sf opt" or "-suffix opt" "command-line
-switches"_Section_start.html#start_7.  See also the "KOKKOS"_#KOKKOS,
+switches"_Section_start.html#start_6.  See also the "KOKKOS"_#KOKKOS,
 "USER-INTEL"_#USER-INTEL, and "USER-OMP"_#USER-OMP packages, which
 have styles optimized for CPU performance.
 
@@ -953,7 +953,7 @@ CCFLAGS: add -restrict :ul
 src/OPT: filenames -> commands
 "Section 5.3"_Section_accelerate.html#acc_3
 "Section 5.3.5"_accelerate_opt.html
-"Section 2.7 -sf opt"_Section_start.html#start_7
+"Section 2.6 -sf opt"_Section_start.html#start_6
 Pair Styles section of "Section 3.5"_Section_commands.html#cmd_5 for pair styles followed by (t)
 "Benchmarks page"_http://lammps.sandia.gov/bench.html of web site :ul
 
@@ -1863,7 +1863,7 @@ All of them have an "intel" in their style name.  "Section
 5.3.2"_accelerate_intel.html gives details of what hardware and
 compilers are required on your system, and how to build and use this
 package.  Its styles can be invoked at run time via the "-sf intel" or
-"-suffix intel" "command-line switches"_Section_start.html#start_7.
+"-suffix intel" "command-line switches"_Section_start.html#start_6.
 Also see the "KOKKOS"_#KOKKOS, "OPT"_#OPT, and "USER-OMP"_#USER-OMP
 packages, which have styles optimized for CPUs and KNLs.
 
@@ -1919,8 +1919,8 @@ src/USER-INTEL: filenames -> commands
 src/USER-INTEL/README
 "Section 5.3"_Section_accelerate.html#acc_3
 "Section 5.3.2"_accelerate_gpu.html
-"Section 2.7 -sf intel"_Section_start.html#start_7
-"Section 2.7 -pk intel"_Section_start.html#start_7
+"Section 2.6 -sf intel"_Section_start.html#start_6
+"Section 2.6 -pk intel"_Section_start.html#start_6
 "package intel"_package.html
 Styles sections of "Section 3.5"_Section_commands.html#cmd_5 for styles followed by (i)
 src/USER-INTEL/TEST
@@ -2193,7 +2193,7 @@ via OpenMP directives.  All of them have an "omp" in their style name.
 "Section 5.3.4"_accelerate_omp.html gives details of what hardware and
 compilers are required on your system, and how to build and use this
 package.  Its styles can be invoked at run time via the "-sf omp" or
-"-suffix omp" "command-line switches"_Section_start.html#start_7.
+"-suffix omp" "command-line switches"_Section_start.html#start_6.
 Also see the "KOKKOS"_#KOKKOS, "OPT"_#OPT, and
 "USER-INTEL"_#USER-INTEL packages, which have styles optimized for
 CPUs.
@@ -2226,8 +2226,8 @@ src/USER-OMP: filenames -> commands
 src/USER-OMP/README
 "Section 5.3"_Section_accelerate.html#acc_3
 "Section 5.3.4"_accelerate_omp.html
-"Section 2.7 -sf omp"_Section_start.html#start_7
-"Section 2.7 -pk omp"_Section_start.html#start_7
+"Section 2.6 -sf omp"_Section_start.html#start_6
+"Section 2.6 -pk omp"_Section_start.html#start_6
 "package omp"_package.html
 Styles sections of "Section 3.5"_Section_commands.html#cmd_5 for styles followed by (o)
 "Benchmarks page"_http://lammps.sandia.gov/bench.html of web site :ul

doc/src/Section_python.txt

@@ -198,7 +198,7 @@ file and the shared library.
 11.3 Building LAMMPS as a shared library :link(py_3),h4
 
 Instructions on how to build LAMMPS as a shared library are given in
-"Section 2.5"_Section_start.html#start_5.  A shared library is one
+"Section 2.4"_Section_start.html#start_4.  A shared library is one
 that is dynamically loadable, which is what Python requires to wrap
 LAMMPS.  On Linux this is a library file that ends in ".so", not ".a".
 
@@ -217,7 +217,7 @@ NOTE: If you are building LAMMPS with an MPI or FFT library or other
 auxiliary libraries (used by various packages), then all of these
 extra libraries must also be shared libraries.  If the LAMMPS
 shared-library build fails with an error complaining about this, see
-"Section 2.5"_Section_start.html#start_5 for more details.
+"Section 2.4"_Section_start.html#start_4 for more details.
 
 :line
 
@@ -439,7 +439,7 @@ first importing from the lammps.py file:
 >>> CDLL("liblammps.so") :pre
 
 If an error occurs, carefully go thru the steps in "Section
-2.5"_Section_start.html#start_5 and above about building a shared
+2.4"_Section_start.html#start_4 and above about building a shared
 library and about insuring Python can find the necessary two files
 it needs.
 

doc/src/Section_start.txt

@@ -14,11 +14,11 @@ experienced users.
 2.1 "What's in the LAMMPS distribution"_#start_1
 2.2 "Making LAMMPS"_#start_2
 2.3 "Making LAMMPS with optional packages"_#start_3
-2.5 "Building LAMMPS as a library"_#start_4
-2.6 "Running LAMMPS"_#start_5
-2.7 "Command-line options"_#start_6
-2.8 "Screen output"_#start_7
-2.9 "Tips for users of previous versions"_#start_8 :all(b)
+2.4 "Building LAMMPS as a library"_#start_4
+2.5 "Running LAMMPS"_#start_5
+2.6 "Command-line options"_#start_6
+2.7 "Screen output"_#start_7
+2.8 "Tips for users of previous versions"_#start_8 :all(b)
 
 :line
 
@@ -714,7 +714,7 @@ type
 lmp_machine -h :pre
 
 to run your executable with the optional "-h command-line
-switch"_#start_7 for "help", which will list the styles and commands
+switch"_#start_6 for "help", which will list the styles and commands
 known to your executable, and immediately exit.
 
 :line

doc/src/accelerate_gpu.txt

@@ -54,7 +54,7 @@ specify the # of GPUs per node
 use GPU styles in your input script :ul
 
 The latter two steps can be done using the "-pk gpu" and "-sf gpu"
-"command-line switches"_Section_start.html#start_7 respectively.  Or
+"command-line switches"_Section_start.html#start_6 respectively.  Or
 the effect of the "-pk" or "-sf" switches can be duplicated by adding
 the "package gpu"_package.html or "suffix gpu"_suffix.html commands
 respectively to your input script.
@@ -75,7 +75,7 @@ This requires two steps (a,b): build the GPU library, then build
 LAMMPS with the GPU package.
 
 You can do both these steps in one line, using the src/Make.py script,
-described in "Section 2.4"_Section_start.html#start_4 of the manual.
+described in "Section 4"_Section_packages.html of the manual.
 Type "Make.py -h" for help.  If run from the src directory, this
 command will create src/lmp_gpu using src/MAKE/Makefile.mpi as the
 starting Makefile.machine:
@@ -151,9 +151,9 @@ automatically if you create more MPI tasks/node than there are
 GPUs/mode.  E.g. with 8 MPI tasks/node and 2 GPUs, each GPU will be
 shared by 4 MPI tasks.
 
-Use the "-sf gpu" "command-line switch"_Section_start.html#start_7,
+Use the "-sf gpu" "command-line switch"_Section_start.html#start_6,
 which will automatically append "gpu" to styles that support it.  Use
-the "-pk gpu Ng" "command-line switch"_Section_start.html#start_7 to
+the "-pk gpu Ng" "command-line switch"_Section_start.html#start_6 to
 set Ng = # of GPUs/node to use.
 
 lmp_machine -sf gpu -pk gpu 1 -in in.script                         # 1 MPI task uses 1 GPU
@@ -188,7 +188,7 @@ pair_style lj/cut/gpu 2.5 :pre
 
 You must also use the "package gpu"_package.html command to enable the
 GPU package, unless the "-sf gpu" or "-pk gpu" "command-line
-switches"_Section_start.html#start_7 were used.  It specifies the
+switches"_Section_start.html#start_6 were used.  It specifies the
 number of GPUs/node to use, as well as other options.
 
 [Speed-ups to expect:]

doc/src/accelerate_intel.txt

@@ -226,7 +226,7 @@ source /opt/intel/parallel_studio_xe_2016.3.067/psxevars.sh
 make intel_cpu_intelmpi :pre
 
 Alternatively, the build can be accomplished with the src/Make.py
-script, described in "Section 2.4"_Section_start.html#start_4 of the
+script, described in "Section 4"_Section_packages.html of the
 manual. Type "Make.py -h" for help. For an example:
 
 Make.py -v -p intel omp -intel cpu -a file intel_cpu_intelmpi :pre
@@ -301,7 +301,7 @@ Hyper-Threading technology disabled.
 
 To enable USER-INTEL optimizations for all available styles used in
 the input script, the "-sf intel"
-"command-line switch"_Section_start.html#start_7 can be used without
+"command-line switch"_Section_start.html#start_6 can be used without
 any requirement for editing the input script. This switch will
 automatically append "intel" to styles that support it. It also
 invokes a default command: "package intel 1"_package.html. This
@@ -314,7 +314,7 @@ support, that 1 coprocessor per node will be used with automatic
 balancing of work between the CPU and the coprocessor.
 
 You can specify different options for the USER-INTEL package by using
-the "-pk intel Nphi" "command-line switch"_Section_start.html#start_7
+the "-pk intel Nphi" "command-line switch"_Section_start.html#start_6
 with keyword/value pairs as specified in the documentation. Here,
 Nphi = # of Xeon Phi coprocessors/node (ignored without offload
 support). Common options to the USER-INTEL package include {omp} to
@@ -387,7 +387,7 @@ can performed automatically by using "-sf hybrid intel opt" or
 and "omp" suffixes can be appended manually in the input script. For
 the latter, the "package omp"_package.html command must be in the
 input script or the "-pk omp Nt" "command-line
-switch"_Section_start.html#start_7 must be used where Nt is the
+switch"_Section_start.html#start_6 must be used where Nt is the
 number of OpenMP threads. The number of OpenMP threads should not be
 set differently for the different packages. Note that the "suffix
 hybrid intel omp"_suffix.html command can also be used within the
@@ -486,7 +486,7 @@ sorting"_atom_modify.html is changed to 1 so that the per-atom data is
 effectively sorted at every rebuild of the neighbor lists. All the
 available coprocessor threads on each Phi will be divided among MPI
 tasks, unless the {tptask} option of the "-pk intel" "command-line
-switch"_Section_start.html#start_7 is used to limit the coprocessor
+switch"_Section_start.html#start_6 is used to limit the coprocessor
 threads per MPI task.
 
 [Restrictions:]

doc/src/accelerate_kokkos.txt

@@ -136,7 +136,7 @@ You must choose at build time whether to build for CPUs (OpenMP),
 GPUs, or Phi.
 
 You can do any of these in one line, using the src/Make.py script,
-described in "Section 2.4"_Section_start.html#start_4 of the manual.
+described in "Section 4"_Section_packages.html of the manual.
 Type "Make.py -h" for help.  If run from the src directory, these
 commands will create src/lmp_kokkos_omp, lmp_kokkos_cuda, and
 lmp_kokkos_phi.  Note that the OMP and PHI options use
@@ -144,7 +144,7 @@ src/MAKE/Makefile.mpi as the starting Makefile.machine.  The CUDA
 option uses src/MAKE/OPTIONS/Makefile.kokkos_cuda.
 
 The latter two steps can be done using the "-k on", "-pk kokkos" and
-"-sf kk" "command-line switches"_Section_start.html#start_7
+"-sf kk" "command-line switches"_Section_start.html#start_6
 respectively.  Or the effect of the "-pk" or "-sf" switches can be
 duplicated by adding the "package kokkos"_package.html or "suffix
 kk"_suffix.html commands respectively to your input script.
@@ -280,10 +280,10 @@ specify how many Phi coprocessors there are per node; each
 coprocessors is simply treated as running some number of MPI tasks.
 
 You must use the "-k on" "command-line
-switch"_Section_start.html#start_7 to enable the KOKKOS package.  It
+switch"_Section_start.html#start_6 to enable the KOKKOS package.  It
 takes additional arguments for hardware settings appropriate to your
 system.  Those arguments are "documented
-here"_Section_start.html#start_7.  The two most commonly used
+here"_Section_start.html#start_6.  The two most commonly used
 options are:
 
 -k on t Nt g Ng :pre
@@ -304,12 +304,12 @@ The "-k on" switch also issues a "package kokkos" command (with no
 additional arguments) which sets various KOKKOS options to default
 values, as discussed on the "package"_package.html command doc page.
 
-Use the "-sf kk" "command-line switch"_Section_start.html#start_7,
+Use the "-sf kk" "command-line switch"_Section_start.html#start_6,
 which will automatically append "kk" to styles that support it.  Use
-the "-pk kokkos" "command-line switch"_Section_start.html#start_7 if
+the "-pk kokkos" "command-line switch"_Section_start.html#start_6 if
 you wish to change any of the default "package kokkos"_package.html
 optionns set by the "-k on" "command-line
-switch"_Section_start.html#start_7.
+switch"_Section_start.html#start_6.
 
 
 
@@ -323,7 +323,7 @@ However, when running in MPI-only mode with 1 thread per MPI task, it
 will typically be faster to use "half" neighbor lists and set the
 Newton flag to "on", just as is the case for non-accelerated pair
 styles.  You can do this with the "-pk" "command-line
-switch"_Section_start.html#start_7.
+switch"_Section_start.html#start_6.
 
 [Or run with the KOKKOS package by editing an input script:]
 
@@ -332,7 +332,7 @@ appropriate thread and GPU values for host=OMP or host=MIC or
 device=CUDA are the same.
 
 You must still use the "-k on" "command-line
-switch"_Section_start.html#start_7 to enable the KOKKOS package, and
+switch"_Section_start.html#start_6 to enable the KOKKOS package, and
 specify its additional arguments for hardware options appropriate to
 your system, as documented above.
 
@@ -343,7 +343,7 @@ pair_style lj/cut/kk 2.5 :pre
 
 You only need to use the "package kokkos"_package.html command if you
 wish to change any of its option defaults, as set by the "-k on"
-"command-line switch"_Section_start.html#start_7.
+"command-line switch"_Section_start.html#start_6.
 
 [Speed-ups to expect:]
 
@@ -389,7 +389,7 @@ If N is the number of physical cores/node, then the number of MPI
 tasks/node * number of threads/task should not exceed N, and should
 typically equal N.  Note that the default threads/task is 1, as set by
 the "t" keyword of the "-k" "command-line
-switch"_Section_start.html#start_7.  If you do not change this, no
+switch"_Section_start.html#start_6.  If you do not change this, no
 additional parallelism (beyond MPI) will be invoked on the host
 CPU(s).
 
@@ -429,7 +429,7 @@ details).
 The -np setting of the mpirun command should set the number of MPI
 tasks/node to be equal to the # of physical GPUs on the node.
 
-Use the "-k" "command-line switch"_Section_commands.html#start_7 to
+Use the "-k" "command-line switch"_Section_commands.html#start_6 to
 specify the number of GPUs per node, and the number of threads per MPI
 task.  As above for multi-core CPUs (and no GPU), if N is the number
 of physical cores/node, then the number of MPI tasks/node * number of

doc/src/accelerate_omp.txt

@@ -41,7 +41,7 @@ each MPI task running on a CPU.
 The lines above illustrate how to include/build with the USER-OMP
 package in two steps, using the "make" command.  Or how to do it with
 one command via the src/Make.py script, described in "Section
-2.4"_Section_start.html#start_4 of the manual.  Type "Make.py -h" for
+4"_Section_packages.html of the manual.  Type "Make.py -h" for
 help.
 
 Note that the CCFLAGS and LINKFLAGS settings in Makefile.machine must
@@ -62,14 +62,14 @@ threads/task should not exceed the physical number of cores (on a
 node), otherwise performance will suffer.
 
 As in the lines above, use the "-sf omp" "command-line
-switch"_Section_start.html#start_7, which will automatically append
+switch"_Section_start.html#start_6, which will automatically append
 "omp" to styles that support it.  The "-sf omp" switch also issues a
 default "package omp 0"_package.html command, which will set the
 number of threads per MPI task via the OMP_NUM_THREADS environment
 variable.
 
 You can also use the "-pk omp Nt" "command-line
-switch"_Section_start.html#start_7, to explicitly set Nt = # of OpenMP
+switch"_Section_start.html#start_6, to explicitly set Nt = # of OpenMP
 threads per MPI task to use, as well as additional options.  Its
 syntax is the same as the "package omp"_package.html command whose doc
 page gives details, including the default values used if it is not

doc/src/accelerate_opt.txt

@@ -36,7 +36,7 @@ None.
 The lines above illustrate how to build LAMMPS with the OPT package in
 two steps, using the "make" command.  Or how to do it with one command
 via the src/Make.py script, described in "Section
-2.4"_Section_start.html#start_4 of the manual.  Type "Make.py -h" for
+4"_Section_packages.html of the manual.  Type "Make.py -h" for
 help.
 
 Note that if you use an Intel compiler to build with the OPT package,
@@ -46,7 +46,7 @@ The Make.py command will add this automatically.
 [Run with the OPT package from the command line:]
 
 As in the lines above, use the "-sf opt" "command-line
-switch"_Section_start.html#start_7, which will automatically append
+switch"_Section_start.html#start_6, which will automatically append
 "opt" to styles that support it.
 
 [Or run with the OPT package by editing an input script:]

doc/src/angle_charmm.txt

@@ -63,7 +63,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/angle_class2.txt

@@ -94,7 +94,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/angle_cosine.txt

@@ -50,7 +50,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/angle_cosine_delta.txt

@@ -55,7 +55,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/angle_cosine_periodic.txt

@@ -63,7 +63,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/angle_cosine_shift.txt

@@ -53,7 +53,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/angle_cosine_shift_exp.txt

@@ -65,7 +65,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/angle_cosine_squared.txt

@@ -55,7 +55,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/angle_fourier.txt

@@ -51,7 +51,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/angle_fourier_simple.txt

@@ -50,7 +50,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/angle_harmonic.txt

@@ -57,7 +57,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/angle_quartic.txt

@@ -57,7 +57,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/angle_table.txt

@@ -136,7 +136,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/balance.txt

@@ -394,7 +394,7 @@ weights.  It assigns the same weight to each particle owned by a
 processor based on the total computational time spent by that
 processor.  See details below on what time window is used.  It uses
 the same timing information as is used for the "MPI task timing
-breakdown"_Section_start.html#start_8, namely, for sections {Pair},
+breakdown"_Section_start.html#start_7, namely, for sections {Pair},
 {Bond}, {Kspace}, and {Neigh}.  The time spent in those portions of
 the timestep are measured for each MPI rank, summed, then divided by
 the number of particles owned by that processor.  I.e. the weight is

doc/src/bond_class2.txt

@@ -56,7 +56,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/bond_fene.txt

@@ -59,7 +59,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/bond_fene_expand.txt

@@ -62,7 +62,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/bond_harmonic.txt

@@ -54,7 +54,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/bond_harmonic_shift.txt

@@ -55,7 +55,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/bond_harmonic_shift_cut.txt

@@ -55,7 +55,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/bond_morse.txt

@@ -53,7 +53,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/bond_nonlinear.txt

@@ -53,7 +53,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/bond_quartic.txt

@@ -88,7 +88,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/bond_table.txt

@@ -133,7 +133,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/compute_pressure.txt

@@ -117,7 +117,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/compute_temp.txt

@@ -79,7 +79,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/compute_temp_partial.txt

@@ -86,7 +86,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/dihedral_charmm.txt

@@ -128,7 +128,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/dihedral_class2.txt

@@ -153,7 +153,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/dihedral_cosine_shift_exp.txt

@@ -64,7 +64,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/dihedral_fourier.txt

@@ -55,7 +55,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/dihedral_harmonic.txt

@@ -65,7 +65,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/dihedral_helix.txt

@@ -58,7 +58,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/dihedral_multi_harmonic.txt

@@ -52,7 +52,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/dihedral_nharmonic.txt

@@ -52,7 +52,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/dihedral_opls.txt

@@ -60,7 +60,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/dihedral_quadratic.txt

@@ -53,7 +53,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/echo.txt

@@ -26,7 +26,7 @@ command to the screen and/or log file as it is read and processed.  If
 an input script has errors, it can be useful to look at echoed output
 to see the last command processed.
 
-The "command-line switch"_Section_start.html#start_5 -echo can be used
+The "command-line switch"_Section_start.html#start_6 -echo can be used
 in place of this command.
 
 [Restrictions:] none

doc/src/fix_addforce.txt

@@ -117,7 +117,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/fix_aveforce.txt

@@ -77,7 +77,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/fix_deform.txt

@@ -557,7 +557,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/fix_enforce2d.txt

@@ -41,7 +41,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/fix_freeze.txt

@@ -45,7 +45,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/fix_gravity.txt

@@ -102,7 +102,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/fix_langevin.txt

@@ -276,7 +276,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/fix_momentum.txt

@@ -73,7 +73,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/fix_nh.txt

@@ -492,7 +492,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/fix_nph_asphere.txt

@@ -93,7 +93,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/fix_nph_body.txt

@@ -92,7 +92,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/fix_nph_sphere.txt

@@ -102,7 +102,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/fix_nphug.txt

@@ -152,7 +152,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/fix_npt_asphere.txt

@@ -117,7 +117,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/fix_npt_body.txt

@@ -116,7 +116,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/fix_npt_sphere.txt

@@ -127,7 +127,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/fix_nve.txt

@@ -46,7 +46,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/fix_nve_asphere.txt

@@ -57,7 +57,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/fix_nve_sphere.txt

@@ -77,7 +77,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/fix_nvt_asphere.txt

@@ -98,7 +98,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/fix_nvt_body.txt

@@ -97,7 +97,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/fix_nvt_sllod.txt

@@ -121,7 +121,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/fix_nvt_sphere.txt

@@ -108,7 +108,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/fix_qeq_comb.txt

@@ -74,7 +74,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/fix_qeq_reax.txt

@@ -92,7 +92,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/fix_reax_bonds.txt

@@ -82,7 +82,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for

doc/src/fix_reaxc_species.txt

@@ -151,7 +151,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for

doc/src/fix_rigid.txt

@@ -676,7 +676,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/fix_setforce.txt

@@ -82,7 +82,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/fix_shake.txt

@@ -159,7 +159,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/fix_wall_reflect.txt

@@ -142,7 +142,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/improper_class2.txt

@@ -99,7 +99,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/improper_cossq.txt

@@ -65,7 +65,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/improper_cvff.txt

@@ -66,7 +66,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/improper_fourier.txt

@@ -60,7 +60,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/improper_harmonic.txt

@@ -70,7 +70,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/improper_ring.txt

@@ -69,7 +69,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/improper_umbrella.txt

@@ -63,7 +63,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/jump.txt

@@ -40,12 +40,12 @@ lmp_g++ < in.script :pre
 since the SELF option invokes the C-library rewind() call, which may
 not be supported for stdin on some systems or by some MPI
 implementations.  This can be worked around by using the "-in
-command-line argument"_Section_start.html#start_7, e.g.
+command-line argument"_Section_start.html#start_6, e.g.
 
 lmp_g++ -in in.script :pre
 
 or by using the "-var command-line
-argument"_Section_start.html#start_7 to pass the script name as a
+argument"_Section_start.html#start_6 to pass the script name as a
 variable to the input script.  In the latter case, a
 "variable"_variable.html called "fname" could be used in place of
 SELF, e.g.

doc/src/log.txt

@@ -34,7 +34,7 @@ the same log file.
 
 The file "log.lammps" is the default log file for a LAMMPS run.  The
 name of the initial log file can also be set by the command-line
-switch -log.  See "Section 2.7"_Section_start.html#start_7 for
+switch -log.  See "Section 2.6"_Section_start.html#start_6 for
 details.
 
 [Restrictions:] none

doc/src/neb.txt

@@ -51,7 +51,7 @@ follows the discussion in these 4 papers: "(HenkelmanA)"_#HenkelmanA,
 
 Each replica runs on a partition of one or more processors.  Processor
 partitions are defined at run-time using the -partition command-line
-switch; see "Section 2.7"_Section_start.html#start_7 of the manual.
+switch; see "Section 2.6"_Section_start.html#start_6 of the manual.
 Note that if you have MPI installed, you can run a multi-replica
 simulation with more replicas (partitions) than you have physical
 processors, e.g you can run a 10-replica simulation on just one or two

doc/src/neighbor.txt

@@ -66,7 +66,7 @@ stored in the list.
 When a run is finished, counts of the number of neighbors stored in
 the pairwise list and the number of times neighbor lists were built
 are printed to the screen and log file.  See "this
-section"_Section_start.html#start_8 for details.
+section"_Section_start.html#start_7 for details.
 
 [Restrictions:] none
 

doc/src/next.txt

@@ -71,7 +71,7 @@ next value (for each variable) is assigned to whichever processor
 partition executes the command first.  All processors in the partition
 are assigned the same value(s).  Running LAMMPS on multiple partitions
 of processors via the "-partition" command-line switch is described in
-"this section"_Section_start.html#start_7 of the manual.  {Universe}-
+"this section"_Section_start.html#start_6 of the manual.  {Universe}-
 and {uloop}-style variables are incremented using the files
 "tmp.lammps.variable" and "tmp.lammps.variable.lock" which you will
 see in your directory during and after such a LAMMPS run.

doc/src/package.txt

@@ -115,7 +115,7 @@ their initialization, before a simulation is defined.
 
 This command can also be specified from the command-line when
 launching LAMMPS, using the "-pk" "command-line
-switch"_Section_start.html#start_7.  The syntax is exactly the same as
+switch"_Section_start.html#start_6.  The syntax is exactly the same as
 when used in an input script.
 
 Note that all of the accelerator packages require the package command
@@ -126,18 +126,18 @@ a default version of the command is typically invoked by other
 accelerator settings.
 
 The KOKKOS package requires a "-k on" "command-line
-switch"_Section_start.html#start_7 respectively, which invokes a
+switch"_Section_start.html#start_6 respectively, which invokes a
 "package kokkos" command with default settings.
 
 For the GPU, USER-INTEL, and USER-OMP packages, if a "-sf gpu" or "-sf
-intel" or "-sf omp" "command-line switch"_Section_start.html#start_7
+intel" or "-sf omp" "command-line switch"_Section_start.html#start_6
 is used to auto-append accelerator suffixes to various styles in the
 input script, then those switches also invoke a "package gpu",
 "package intel", or "package omp" command with default settings.
 
 NOTE: A package command for a particular style can be invoked multiple
 times when a simulation is setup, e.g. by the "-c on", "-k on", "-sf",
-and "-pk" "command-line switches"_Section_start.html#start_7, and by
+and "-pk" "command-line switches"_Section_start.html#start_6, and by
 using this command in an input script.  Each time it is used all of
 the style options are set, either to default values or to specified
 settings.  I.e. settings from previous invocations do not persist
@@ -305,7 +305,7 @@ value via their package commands, but there is only a single global
 invoked, you should insure the two values are consistent.  If they are
 not, the last one invoked will take precedence, for both packages.
 Also note that if the "-sf hybrid intel omp" "command-line
-switch"_"_Section_start.html#start_7 is used, it invokes a "package
+switch"_"_Section_start.html#start_6 is used, it invokes a "package
 intel" command, followed by a "package omp" command, both with a
 setting of {Nthreads} = 0.
 
@@ -550,7 +550,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 [Related commands:]
 
 "suffix"_suffix.html, "-pk" "command-line
-setting"_Section_start.html#start_7
+setting"_Section_start.html#start_6
 
 [Default:]
 
@@ -558,9 +558,9 @@ For the GPU package, the default is Ngpu = 1 and the option defaults
 are neigh = yes, newton = off, binsize = 0.0, split = 1.0, gpuID = 0
 to Ngpu-1, tpa = 1, and device = not used.  These settings are made
 automatically if the "-sf gpu" "command-line
-switch"_Section_start.html#start_7 is used.  If it is not used, you
+switch"_Section_start.html#start_6 is used.  If it is not used, you
 must invoke the package gpu command in your input script or via the
-"-pk gpu" "command-line switch"_Section_start.html#start_7.
+"-pk gpu" "command-line switch"_Section_start.html#start_6.
 
 For the USER-INTEL package, the default is Nphi = 1 and the option
 defaults are omp = 0, mode = mixed, lrt = no, balance = -1, tpc = 4,
@@ -569,21 +569,21 @@ style being used.  This value is output to the screen in the offload
 report at the end of each run.  Note that all of these settings,
 except "omp" and "mode", are ignored if LAMMPS was not built with
 Xeon Phi coprocessor support.  These settings are made automatically
-if the "-sf intel" "command-line switch"_Section_start.html#start_7
+if the "-sf intel" "command-line switch"_Section_start.html#start_6
 is used.  If it is not used, you must invoke the package intel
 command in your input script or or via the "-pk intel" "command-line
-switch"_Section_start.html#start_7.
+switch"_Section_start.html#start_6.
 
 For the KOKKOS package, the option defaults neigh = full,
 neigh/qeq = full, newton = off, binsize = 0.0, and comm = device.
 These settings are made automatically by the required "-k on" "command-line
-switch"_Section_start.html#start_7.  You can change them bu using the
+switch"_Section_start.html#start_6.  You can change them bu using the
 package kokkos command in your input script or via the "-pk kokkos"
-"command-line switch"_Section_start.html#start_7.
+"command-line switch"_Section_start.html#start_6.
 
 For the OMP package, the default is Nthreads = 0 and the option
 defaults are neigh = yes.  These settings are made automatically if
-the "-sf omp" "command-line switch"_Section_start.html#start_7 is
+the "-sf omp" "command-line switch"_Section_start.html#start_6 is
 used.  If it is not used, you must invoke the package omp command in
 your input script or via the "-pk omp" "command-line
-switch"_Section_start.html#start_7.
+switch"_Section_start.html#start_6.

doc/src/pair_adp.txt

@@ -137,7 +137,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/pair_agni.txt

@@ -70,7 +70,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated style explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/pair_airebo.txt

@@ -185,7 +185,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/pair_beck.txt

@@ -63,7 +63,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/pair_born.txt

@@ -152,7 +152,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section 5"_Section_accelerate.html of the manual for

doc/src/pair_brownian.txt

@@ -85,7 +85,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "this section"_Section_accelerate.html of the manual for more