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git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11714 f3b2605a-c512-4ea7-a41b-209d697bcdaa

This commit is contained in:
sjplimp 2014-04-04 20:37:55 +00:00
parent 20da166487
commit 9f9b94aa23
4 changed files with 16 additions and 10 deletions
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2
doc/Section_intro.html
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@ -253,9 +253,11 @@ molecular dynamics options:
<LI><A HREF = "fix_imd.html">real-time visualization and interactive MD</A>
<LI><A HREF = "fix_atc.html">atom-to-continuum coupling</A> with finite elements
<LI>coupled rigid body integration via the <A HREF = "fix_poems.html">POEMS</A> library
<LI><A HREF = "fix_qmmm.html">QM/MM coupling</A>
<LI><A HREF = "fix_gcmc.html">grand canonical Monte Carlo</A> insertions/deletions
<LI><A HREF = "pair_dsmc.html">Direct Simulation Monte Carlo</A> for low-density fluids
<LI><A HREF = "pair_peri.html">Peridynamics mesoscale modeling</A>
<LI><A HREF = "fix_lb_fluid.html">Lattice Boltzmann fluid</A>
<LI><A HREF = "fix_tmd.html">targeted</A> and <A HREF = "fix_smd.html">steered</A> molecular dynamics
<LI><A HREF = "fix_ttm.html">two-temperature electron model</A>
</UL>

2
doc/Section_intro.txt
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@ -251,9 +251,11 @@ molecular dynamics options:
"real-time visualization and interactive MD"_fix_imd.html
"atom-to-continuum coupling"_fix_atc.html with finite elements
coupled rigid body integration via the "POEMS"_fix_poems.html library
"QM/MM coupling"_fix_qmmm.html
"grand canonical Monte Carlo"_fix_gcmc.html insertions/deletions
"Direct Simulation Monte Carlo"_pair_dsmc.html for low-density fluids
"Peridynamics mesoscale modeling"_pair_peri.html
"Lattice Boltzmann fluid"_fix_lb_fluid.html
"targeted"_fix_tmd.html and "steered"_fix_smd.html molecular dynamics
"two-temperature electron model"_fix_ttm.html :ul

11
doc/dump_molfile.html
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@ -40,13 +40,14 @@ dump mf3 all molfile 50 melt3.xyz xyz .:/home/akohlmey/vmd/plugins/LINUX/molfile
<P><B>Description:</B>
</P>
<P>Dump a snapshot of atom coordinates and selected additional quantities
to one or more files every N timesteps in one of several formats. Only
information for atoms in the specified group is dumped. This specific
dump style uses molfile plugins that are bundled with the
to one or more files every N timesteps in one of several formats.
Only information for atoms in the specified group is dumped. This
specific dump style uses molfile plugins that are bundled with the
<A HREF = "http://www.ks.uiuc.edu/Research/vmd">VMD</A> molecular visualization and
analysis program. See <A HREF = "Section_tools.html#vmd">Section tools</A> of the
manual and the tools/lmp2vmd/README.txt file for more information about
support in VMD for reading and visualizing native LAMMPS dump files.
manual and the tools/lmp2vmd/README.txt file for more information
about support in VMD for reading and visualizing native LAMMPS dump
files.
</P>
<P>Unless the filename contains a * character, the output will be written
to one single file with the specified format. Otherwise there will be

11
doc/dump_molfile.txt
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@ -30,13 +30,14 @@ dump mf3 all molfile 50 melt3.xyz xyz .:/home/akohlmey/vmd/plugins/LINUX/molfile
[Description:]
Dump a snapshot of atom coordinates and selected additional quantities
to one or more files every N timesteps in one of several formats. Only
information for atoms in the specified group is dumped. This specific
dump style uses molfile plugins that are bundled with the
to one or more files every N timesteps in one of several formats.
Only information for atoms in the specified group is dumped. This
specific dump style uses molfile plugins that are bundled with the
"VMD"_http://www.ks.uiuc.edu/Research/vmd molecular visualization and
analysis program. See "Section tools"_Section_tools.html#vmd of the
manual and the tools/lmp2vmd/README.txt file for more information about
support in VMD for reading and visualizing native LAMMPS dump files.
manual and the tools/lmp2vmd/README.txt file for more information
about support in VMD for reading and visualizing native LAMMPS dump
files.
Unless the filename contains a * character, the output will be written
to one single file with the specified format. Otherwise there will be