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git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@6826 f3b2605a-c512-4ea7-a41b-209d697bcdaa

This commit is contained in:
sjplimp 2011-08-26 18:53:00 +00:00
parent b0f68420c3
commit 9c88bf8203
273 changed files with 515 additions and 506 deletions
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3
doc/Section_accelerate.html
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@ -275,6 +275,9 @@ many timesteps, to run entirely on the GPU (except for inter-processor
MPI communication), so that atom-based data (e.g. coordinates, forces)
do not have to move back-and-forth between the CPU and GPU.
<LI>The speed-up advantage of this approach is typically better when the
number of atoms per GPU is large
<LI>Data will stay on the GPU until a timestep where a non-GPU-ized fix or
compute is invoked. Whenever a non-GPU operation occurs (fix,
compute, output), data automatically moves back to the CPU as needed.

2
doc/Section_intro.html
View File

@ -554,7 +554,7 @@ the list.
<TR><TD >GROMACS pair potentials </TD><TD > Mark Stevens (Sandia)</TD></TR>
<TR><TD >lmp2vmd tool </TD><TD > Axel Kohlmeyer (U Penn)</TD></TR>
<TR><TD >compute group/group </TD><TD > Naveen Michaud-Agrawal (Johns Hopkins U)</TD></TR>
<TR><TD >CG-CMM user package for coarse-graining </TD><TD > Axel Kohlmeyer (U Penn)</TD></TR>
<TR><TD >USER-CG-CMM package for coarse-graining </TD><TD > Axel Kohlmeyer (U Penn)</TD></TR>
<TR><TD >cosine/delta angle potential </TD><TD > Axel Kohlmeyer (U Penn)</TD></TR>
<TR><TD >VIM editor add-ons for LAMMPS input scripts </TD><TD > Gerolf Ziegenhain</TD></TR>
<TR><TD >pair lubricate </TD><TD > Randy Schunk (Sandia)</TD></TR>

2
doc/Section_intro.txt
View File

@ -539,7 +539,7 @@ fix smd for steered MD : Axel Kohlmeyer (U Penn)
GROMACS pair potentials : Mark Stevens (Sandia)
lmp2vmd tool : Axel Kohlmeyer (U Penn)
compute group/group : Naveen Michaud-Agrawal (Johns Hopkins U)
CG-CMM user package for coarse-graining : Axel Kohlmeyer (U Penn)
USER-CG-CMM package for coarse-graining : Axel Kohlmeyer (U Penn)
cosine/delta angle potential : Axel Kohlmeyer (U Penn)
VIM editor add-ons for LAMMPS input scripts : Gerolf Ziegenhain
pair lubricate : Randy Schunk (Sandia)

38
doc/Section_packages.html
View File

@ -40,25 +40,25 @@ packages, more details are provided.
<P>The current list of standard packages is as follows:
</P>
<DIV ALIGN=center><TABLE BORDER=1 >
<TR><TD >asphere </TD><TD > aspherical particles and force fields</TD></TR>
<TR><TD >class2 </TD><TD > class 2 force fields</TD></TR>
<TR><TD >colloid </TD><TD > colloidal particle force fields</TD></TR>
<TR><TD >dipole </TD><TD > point dipole particles and force fields</TD></TR>
<TR><TD >gpu </TD><TD > GPU-enabled force field styles</TD></TR>
<TR><TD >granular </TD><TD > force fields and boundary conditions for granular systems</TD></TR>
<TR><TD >kspace </TD><TD > long-range Ewald and particle-mesh (PPPM) solvers</TD></TR>
<TR><TD >manybody </TD><TD > metal, 3-body, bond-order potentials</TD></TR>
<TR><TD >meam </TD><TD > modified embedded atom method (MEAM) potential</TD></TR>
<TR><TD >mc </TD><TD > Monte Carlo options</TD></TR>
<TR><TD >molecule </TD><TD > force fields for molecular systems</TD></TR>
<TR><TD >opt </TD><TD > optimized versions of a few pair potentials</TD></TR>
<TR><TD >peri </TD><TD > Peridynamics model and potential</TD></TR>
<TR><TD >poems </TD><TD > coupled rigid body motion</TD></TR>
<TR><TD >reax </TD><TD > ReaxFF potential</TD></TR>
<TR><TD >replica </TD><TD > multi-replica methods</TD></TR>
<TR><TD >shock </TD><TD > methods for MD simulations of shock loading</TD></TR>
<TR><TD >srd </TD><TD > stochastic rotation dynamics (SRD)</TD></TR>
<TR><TD >xtc </TD><TD > dump atom snapshots in XTC format</TD></TR>
<TR><TD >ASPHERE </TD><TD > aspherical particles and force fields</TD></TR>
<TR><TD >CLASS2 </TD><TD > class 2 force fields</TD></TR>
<TR><TD >COLLOID </TD><TD > colloidal particle force fields</TD></TR>
<TR><TD >DIPOLE </TD><TD > point dipole particles and force fields</TD></TR>
<TR><TD >GPU </TD><TD > GPU-enabled force field styles</TD></TR>
<TR><TD >GRANULAR </TD><TD > force fields and boundary conditions for granular systems</TD></TR>
<TR><TD >KSPACE </TD><TD > long-range Ewald and particle-mesh (PPPM) solvers</TD></TR>
<TR><TD >MANYBODY </TD><TD > metal, 3-body, bond-order potentials</TD></TR>
<TR><TD >MEAM </TD><TD > modified embedded atom method (MEAM) potential</TD></TR>
<TR><TD >MC </TD><TD > Monte Carlo options</TD></TR>
<TR><TD >MOLECULE </TD><TD > force fields for molecular systems</TD></TR>
<TR><TD >OPT </TD><TD > optimized versions of a few pair potentials</TD></TR>
<TR><TD >PERI </TD><TD > Peridynamics model and potential</TD></TR>
<TR><TD >POEMS </TD><TD > coupled rigid body motion</TD></TR>
<TR><TD >REAX </TD><TD > ReaxFF potential</TD></TR>
<TR><TD >REPLICA </TD><TD > multi-replica methods</TD></TR>
<TR><TD >SHOCK </TD><TD > methods for MD simulations of shock loading</TD></TR>
<TR><TD >SRD </TD><TD > stochastic rotation dynamics (SRD)</TD></TR>
<TR><TD >XTC </TD><TD > dump atom snapshots in XTC format</TD></TR>
<TR><TD >
</TD></TR></TABLE></DIV>

38
doc/Section_packages.txt
View File

@ -35,25 +35,25 @@ packages, more details are provided.
The current list of standard packages is as follows:
asphere : aspherical particles and force fields
class2 : class 2 force fields
colloid : colloidal particle force fields
dipole : point dipole particles and force fields
gpu : GPU-enabled force field styles
granular : force fields and boundary conditions for granular systems
kspace : long-range Ewald and particle-mesh (PPPM) solvers
manybody : metal, 3-body, bond-order potentials
meam : modified embedded atom method (MEAM) potential
mc : Monte Carlo options
molecule : force fields for molecular systems
opt : optimized versions of a few pair potentials
peri : Peridynamics model and potential
poems : coupled rigid body motion
reax : ReaxFF potential
replica : multi-replica methods
shock : methods for MD simulations of shock loading
srd : stochastic rotation dynamics (SRD)
xtc : dump atom snapshots in XTC format
ASPHERE : aspherical particles and force fields
CLASS2 : class 2 force fields
COLLOID : colloidal particle force fields
DIPOLE : point dipole particles and force fields
GPU : GPU-enabled force field styles
GRANULAR : force fields and boundary conditions for granular systems
KSPACE : long-range Ewald and particle-mesh (PPPM) solvers
MANYBODY : metal, 3-body, bond-order potentials
MEAM : modified embedded atom method (MEAM) potential
MC : Monte Carlo options
MOLECULE : force fields for molecular systems
OPT : optimized versions of a few pair potentials
PERI : Peridynamics model and potential
POEMS : coupled rigid body motion
REAX : ReaxFF potential
REPLICA : multi-replica methods
SHOCK : methods for MD simulations of shock loading
SRD : stochastic rotation dynamics (SRD)
XTC : dump atom snapshots in XTC format
:tb(s=:)
:line

17
doc/Section_start.html
View File

@ -579,15 +579,18 @@ of simulations. For some packages, this will keep you from having to
build auxiliary libraries (see below), and will also produce a smaller
executable which may run a bit faster.
</P>
<P>By default, LAMMPS includes only the "kspace", "manybody", and
"molecule" packages.
<P>When you download a LAMMPS tarball, these packages are pre-installed
in the src directory: KSPACE, MANYBODY,MOLECULE. When you download
LAMMPS source files from the SVN or Git repositories, no packages are
pre-installed.
</P>
<P>Packages are included or excluded by typing "make yes-name" or "make
no-name", where "name" is the name of the package. You can also type
"make yes-standard", "make no-standard", "make yes-user", "make
no-user", "make yes-all" or "make no-all" to include/exclude various
sets of packages. Type "make package" to see the all of the
package-related make options.
no-name", where "name" is the name of the package in lower-case, e.g.
name = kspace for the KSPACE package or name = user-atc for the
USER-ATC package. You can also type "make yes-standard", "make
no-standard", "make yes-user", "make no-user", "make yes-all" or "make
no-all" to include/exclude various sets of packages. Type "make
package" to see the all of the package-related make options.
</P>
<P>IMPORTANT NOTE: Inclusion/exclusion of a package works by simply
moving files back and forth between the main src directory and

17
doc/Section_start.txt
View File

@ -574,15 +574,18 @@ of simulations. For some packages, this will keep you from having to
build auxiliary libraries (see below), and will also produce a smaller
executable which may run a bit faster.
By default, LAMMPS includes only the "kspace", "manybody", and
"molecule" packages.
When you download a LAMMPS tarball, these packages are pre-installed
in the src directory: KSPACE, MANYBODY,MOLECULE. When you download
LAMMPS source files from the SVN or Git repositories, no packages are
pre-installed.
Packages are included or excluded by typing "make yes-name" or "make
no-name", where "name" is the name of the package. You can also type
"make yes-standard", "make no-standard", "make yes-user", "make
no-user", "make yes-all" or "make no-all" to include/exclude various
sets of packages. Type "make package" to see the all of the
package-related make options.
no-name", where "name" is the name of the package in lower-case, e.g.
name = kspace for the KSPACE package or name = user-atc for the
USER-ATC package. You can also type "make yes-standard", "make
no-standard", "make yes-user", "make no-user", "make yes-all" or "make
no-all" to include/exclude various sets of packages. Type "make
package" to see the all of the package-related make options.
IMPORTANT NOTE: Inclusion/exclusion of a package works by simply
moving files back and forth between the main src directory and

2
doc/angle_charmm.html
View File

@ -49,7 +49,7 @@ internally; hence the units of K are in energy/radian^2.
<P><B>Restrictions:</B>
</P>
<P>This angle style can only be used if LAMMPS was built with the
"molecular" package (which it is by default). See the <A HREF = "Section_start.html#start_3">Making
MOLECULAR package (which it is by default). See the <A HREF = "Section_start.html#start_3">Making
LAMMPS</A> section for more info on packages.
</P>
<P><B>Related commands:</B>

2
doc/angle_charmm.txt
View File

@ -46,7 +46,7 @@ internally; hence the units of K are in energy/radian^2.
[Restrictions:]
This angle style can only be used if LAMMPS was built with the
"molecular" package (which it is by default). See the "Making
MOLECULAR package (which it is by default). See the "Making
LAMMPS"_Section_start.html#start_3 section for more info on packages.
[Related commands:]

6
doc/angle_class2.html
View File

@ -80,9 +80,9 @@ same value from the Ea formula.
</P>
<P><B>Restrictions:</B>
</P>
<P>This angle style can only be used if LAMMPS was built with the
"class2" package. See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A>
section for more info on packages.
<P>This angle style can only be used if LAMMPS was built with the CLASS2
package. See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A> section
for more info on packages.
</P>
<P><B>Related commands:</B>
</P>

6
doc/angle_class2.txt
View File

@ -77,9 +77,9 @@ same value from the Ea formula.
[Restrictions:]
This angle style can only be used if LAMMPS was built with the
"class2" package. See the "Making LAMMPS"_Section_start.html#start_3
section for more info on packages.
This angle style can only be used if LAMMPS was built with the CLASS2
package. See the "Making LAMMPS"_Section_start.html#start_3 section
for more info on packages.
[Related commands:]

2
doc/angle_cmm.html
View File

@ -52,7 +52,7 @@ internally; hence the units of K are in energy/radian^2.
<P><B>Restrictions:</B>
</P>
<P>This angle style can only be used if LAMMPS was built with the
"user-cg-cmm" package. See the <A HREF = "Section_start.html#start_3">Making
"user-cgCMM package. See the <A HREF = "Section_start.html#start_3">Making
LAMMPS</A> section for more info on packages.
</P>
<P><B>Related commands:</B>

2
doc/angle_cmm.txt
View File

@ -49,7 +49,7 @@ internally; hence the units of K are in energy/radian^2.
[Restrictions:]
This angle style can only be used if LAMMPS was built with the
"user-cg-cmm" package. See the "Making
"user-cgCMM package. See the "Making
LAMMPS"_Section_start.html#start_3 section for more info on packages.
[Related commands:]

2
doc/angle_cosine.html
View File

@ -38,7 +38,7 @@ or <A HREF = "read_restart.html">read_restart</A> commands:
<P><B>Restrictions:</B>
</P>
<P>This angle style can only be used if LAMMPS was built with the
"molecular" package (which it is by default). See the <A HREF = "Section_start.html#start_3">Making
MOLECULAR package (which it is by default). See the <A HREF = "Section_start.html#start_3">Making
LAMMPS</A> section for more info on packages.
</P>
<P><B>Related commands:</B>

2
doc/angle_cosine.txt
View File

@ -35,7 +35,7 @@ K (energy) :ul
[Restrictions:]
This angle style can only be used if LAMMPS was built with the
"molecular" package (which it is by default). See the "Making
MOLECULAR package (which it is by default). See the "Making
LAMMPS"_Section_start.html#start_3 section for more info on packages.
[Related commands:]

2
doc/angle_cosine_delta.html
View File

@ -43,7 +43,7 @@ internally.
<P><B>Restrictions:</B>
</P>
<P>This angle style can only be used if LAMMPS was built with the
"molecular" package (which it is by default). See the <A HREF = "Section_start.html#start_3">Making
MOLECULAR package (which it is by default). See the <A HREF = "Section_start.html#start_3">Making
LAMMPS</A> section for more info on packages.
</P>
<P><B>Related commands:</B>

2
doc/angle_cosine_delta.txt
View File

@ -40,7 +40,7 @@ internally.
[Restrictions:]
This angle style can only be used if LAMMPS was built with the
"molecular" package (which it is by default). See the "Making
MOLECULAR package (which it is by default). See the "Making
LAMMPS"_Section_start.html#start_3 section for more info on packages.
[Related commands:]

2
doc/angle_cosine_periodic.html
View File

@ -51,7 +51,7 @@ geometry.
<P><B>Restrictions:</B>
</P>
<P>This angle style can only be used if LAMMPS was built with the
"molecular" package (which it is by default). See the <A HREF = "Section_start.html#start_3">Making
MOLECULAR package (which it is by default). See the <A HREF = "Section_start.html#start_3">Making
LAMMPS</A> section for more info on packages.
</P>
<P><B>Related commands:</B>

2
doc/angle_cosine_periodic.txt
View File

@ -48,7 +48,7 @@ geometry.
[Restrictions:]
This angle style can only be used if LAMMPS was built with the
"molecular" package (which it is by default). See the "Making
MOLECULAR package (which it is by default). See the "Making
LAMMPS"_Section_start.html#start_3 section for more info on packages.
[Related commands:]

4
doc/angle_cosine_shift.html
View File

@ -41,8 +41,8 @@ or <A HREF = "read_restart.html">read_restart</A> commands:
<P><B>Restrictions:</B>
</P>
<P>This angle style can only be used if LAMMPS was built with the
"user-misc" package. See the <A HREF = "Section_start.html#start_3">Making
LAMMPS</A> section for more info on packages.
USER-MISC package. See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A>
section for more info on packages.
</P>
<P><B>Related commands:</B>
</P>

4
doc/angle_cosine_shift.txt
View File

@ -38,8 +38,8 @@ theta (angle) :ul
[Restrictions:]
This angle style can only be used if LAMMPS was built with the
"user-misc" package. See the "Making
LAMMPS"_Section_start.html#start_3 section for more info on packages.
USER-MISC package. See the "Making LAMMPS"_Section_start.html#start_3
section for more info on packages.
[Related commands:]

4
doc/angle_cosine_shift_exp.html
View File

@ -53,8 +53,8 @@ or <A HREF = "read_restart.html">read_restart</A> commands:
<P><B>Restrictions:</B>
</P>
<P>This angle style can only be used if LAMMPS was built with the
"user-misc" package. See the <A HREF = "Section_start.html#start_3">Making
LAMMPS</A> section for more info on packages.
USER-MISC package. See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A>
section for more info on packages.
</P>
<P><B>Related commands:</B>
</P>

4
doc/angle_cosine_shift_exp.txt
View File

@ -50,8 +50,8 @@ A (real number) :ul
[Restrictions:]
This angle style can only be used if LAMMPS was built with the
"user-misc" package. See the "Making
LAMMPS"_Section_start.html#start_3 section for more info on packages.
USER-MISC package. See the "Making LAMMPS"_Section_start.html#start_3
section for more info on packages.
[Related commands:]

2
doc/angle_cosine_squared.html
View File

@ -43,7 +43,7 @@ internally.
<P><B>Restrictions:</B>
</P>
<P>This angle style can only be used if LAMMPS was built with the
"molecular" package (which it is by default). See the <A HREF = "Section_start.html#start_3">Making
MOLECULAR package (which it is by default). See the <A HREF = "Section_start.html#start_3">Making
LAMMPS</A> section for more info on packages.
</P>
<P><B>Related commands:</B>

2
doc/angle_cosine_squared.txt
View File

@ -40,7 +40,7 @@ internally.
[Restrictions:]
This angle style can only be used if LAMMPS was built with the
"molecular" package (which it is by default). See the "Making
MOLECULAR package (which it is by default). See the "Making
LAMMPS"_Section_start.html#start_3 section for more info on packages.
[Related commands:]

2
doc/angle_harmonic.html
View File

@ -43,7 +43,7 @@ internally; hence the units of K are in energy/radian^2.
<P><B>Restrictions:</B> none
</P>
<P>This angle style can only be used if LAMMPS was built with the
"molecular" package (which it is by default). See the <A HREF = "Section_start.html#start_3">Making
MOLECULAR package (which it is by default). See the <A HREF = "Section_start.html#start_3">Making
LAMMPS</A> section for more info on packages.
</P>
<P><B>Related commands:</B>

2
doc/angle_harmonic.txt
View File

@ -40,7 +40,7 @@ internally; hence the units of K are in energy/radian^2.
[Restrictions:] none
This angle style can only be used if LAMMPS was built with the
"molecular" package (which it is by default). See the "Making
MOLECULAR package (which it is by default). See the "Making
LAMMPS"_Section_start.html#start_3 section for more info on packages.
[Related commands:]

2
doc/angle_hybrid.html
View File

@ -77,7 +77,7 @@ for specific angle types.
<P><B>Restrictions:</B>
</P>
<P>This angle style can only be used if LAMMPS was built with the
"molecular" package (which it is by default). See the <A HREF = "Section_start.html#start_3">Making
MOLECULAR package (which it is by default). See the <A HREF = "Section_start.html#start_3">Making
LAMMPS</A> section for more info on packages.
</P>
<P>Unlike other angle styles, the hybrid angle style does not store angle

2
doc/angle_hybrid.txt
View File

@ -74,7 +74,7 @@ for specific angle types.
[Restrictions:]
This angle style can only be used if LAMMPS was built with the
"molecular" package (which it is by default). See the "Making
MOLECULAR package (which it is by default). See the "Making
LAMMPS"_Section_start.html#start_3 section for more info on packages.
Unlike other angle styles, the hybrid angle style does not store angle

2
doc/angle_style.html
View File

@ -83,7 +83,7 @@ page</A>.
<P>Angle styles can only be set for atom_styles that allow angles to be
defined.
</P>
<P>Most angle styles are part of the "molecular" package. They are only
<P>Most angle styles are part of the MOLECULAR package. They are only
enabled if LAMMPS was built with that package. See the <A HREF = "Section_start.html#start_3">Making
LAMMPS</A> section for more info on packages.
The doc pages for individual bond potentials tell if it is part of a

2
doc/angle_style.txt
View File

@ -81,7 +81,7 @@ page"_Section_commands.html#cmd_5.
Angle styles can only be set for atom_styles that allow angles to be
defined.
Most angle styles are part of the "molecular" package. They are only
Most angle styles are part of the MOLECULAR package. They are only
enabled if LAMMPS was built with that package. See the "Making
LAMMPS"_Section_start.html#start_3 section for more info on packages.
The doc pages for individual bond potentials tell if it is part of a

2
doc/angle_table.html
View File

@ -124,7 +124,7 @@ one that matches the specified keyword.
<P><B>Restrictions:</B>
</P>
<P>This angle style can only be used if LAMMPS was built with the
"molecular" package (which it is by default). See the <A HREF = "Section_start.html#start_3">Making
MOLECULAR package (which it is by default). See the <A HREF = "Section_start.html#start_3">Making
LAMMPS</A> section for more info on packages.
</P>
<P><B>Related commands:</B>

2
doc/angle_table.txt
View File

@ -121,7 +121,7 @@ one that matches the specified keyword.
[Restrictions:]
This angle style can only be used if LAMMPS was built with the
"molecular" package (which it is by default). See the "Making
MOLECULAR package (which it is by default). See the "Making
LAMMPS"_Section_start.html#start_3 section for more info on packages.
[Related commands:]

10
doc/atom_style.html
View File

@ -124,12 +124,12 @@ section</A>.
<A HREF = "read_data.html">read_data</A> or <A HREF = "create_box.html">create_box</A> command.
</P>
<P>The <I>angle</I>, <I>bond</I>, <I>full</I>, and <I>molecular</I> styles are part of the
"molecular" package. The <I>dipole</I> style is part of the "dipole"
MOLECULAR package. The <I>dipole</I> style is part of the "dipole"
package. The <I>ellipsoid</I> style is part of the "asphere" package. The
<I>peri</I> style is part of the "peri" package for Peridynamics. The
<I>electron</I> style is part of the "user-eff" package for <A HREF = "pair_eff.html">electronic
force fields</A>. The <I>wavepacket</I> style is part of the
"user-awpmd" package for the <A HREF = "pair_awpmd.html">antisymmetrized wave packet MD
<I>peri</I> style is part of the PERI package for Peridynamics. The
<I>electron</I> style is part of the USER-EFF package for <A HREF = "pair_eff.html">electronic force
fields</A>. The <I>wavepacket</I> style is part of the
USER-AWPMD package for the <A HREF = "pair_awpmd.html">antisymmetrized wave packet MD
method</A>. They are only enabled if LAMMPS was built
with that package. See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A>
section for more info.

10
doc/atom_style.txt
View File

@ -120,12 +120,12 @@ This command cannot be used after the simulation box is defined by a
"read_data"_read_data.html or "create_box"_create_box.html command.
The {angle}, {bond}, {full}, and {molecular} styles are part of the
"molecular" package. The {dipole} style is part of the "dipole"
MOLECULAR package. The {dipole} style is part of the "dipole"
package. The {ellipsoid} style is part of the "asphere" package. The
{peri} style is part of the "peri" package for Peridynamics. The
{electron} style is part of the "user-eff" package for "electronic
force fields"_pair_eff.html. The {wavepacket} style is part of the
"user-awpmd" package for the "antisymmetrized wave packet MD
{peri} style is part of the PERI package for Peridynamics. The
{electron} style is part of the USER-EFF package for "electronic force
fields"_pair_eff.html. The {wavepacket} style is part of the
USER-AWPMD package for the "antisymmetrized wave packet MD
method"_pair_awpmd.html. They are only enabled if LAMMPS was built
with that package. See the "Making LAMMPS"_Section_start.html#start_3
section for more info.

2
doc/bond_class2.html
View File

@ -42,7 +42,7 @@ or <A HREF = "read_restart.html">read_restart</A> commands:
</UL>
<P><B>Restrictions:</B>
</P>
<P>This bond style can only be used if LAMMPS was built with the "class2"
<P>This bond style can only be used if LAMMPS was built with the CLASS2
package. See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A> section
for more info on packages.
</P>

2
doc/bond_class2.txt
View File

@ -39,7 +39,7 @@ K4 (energy/distance^4) :ul
[Restrictions:]
This bond style can only be used if LAMMPS was built with the "class2"
This bond style can only be used if LAMMPS was built with the CLASS2
package. See the "Making LAMMPS"_Section_start.html#start_3 section
for more info on packages.

2
doc/bond_fene.html
View File

@ -45,7 +45,7 @@ or <A HREF = "read_restart.html">read_restart</A> commands:
<P><B>Restrictions:</B>
</P>
<P>This bond style can only be used if LAMMPS was built with the
"molecular" package (which it is by default). See the <A HREF = "Section_start.html#start_3">Making
MOLECULAR package (which it is by default). See the <A HREF = "Section_start.html#start_3">Making
LAMMPS</A> section for more info on packages.
</P>
<P>You typically should specify <A HREF = "special_bonds.html"">special_bonds fene</A>

2
doc/bond_fene.txt
View File

@ -42,7 +42,7 @@ sigma (distance) :ul
[Restrictions:]
This bond style can only be used if LAMMPS was built with the
"molecular" package (which it is by default). See the "Making
MOLECULAR package (which it is by default). See the "Making
LAMMPS"_Section_start.html#start_3 section for more info on packages.
You typically should specify "special_bonds fene"_special_bonds.html"

2
doc/bond_fene_expand.html
View File

@ -50,7 +50,7 @@ or <A HREF = "read_restart.html">read_restart</A> commands:
<P><B>Restrictions:</B>
</P>
<P>This bond style can only be used if LAMMPS was built with the
"molecular" package (which it is by default). See the <A HREF = "Section_start.html#start_3">Making
MOLECULAR package (which it is by default). See the <A HREF = "Section_start.html#start_3">Making
LAMMPS</A> section for more info on packages.
</P>
<P>You typically should specify <A HREF = "special_bonds.html"">special_bonds fene</A>

2
doc/bond_fene_expand.txt
View File

@ -47,7 +47,7 @@ delta (distance) :ul
[Restrictions:]
This bond style can only be used if LAMMPS was built with the
"molecular" package (which it is by default). See the "Making
MOLECULAR package (which it is by default). See the "Making
LAMMPS"_Section_start.html#start_3 section for more info on packages.
You typically should specify "special_bonds fene"_special_bonds.html"

2
doc/bond_harmonic.html
View File

@ -40,7 +40,7 @@ or <A HREF = "read_restart.html">read_restart</A> commands:
<P><B>Restrictions:</B>
</P>
<P>This bond style can only be used if LAMMPS was built with the
"molecular" package (which it is by default). See the <A HREF = "Section_start.html#start_3">Making
MOLECULAR package (which it is by default). See the <A HREF = "Section_start.html#start_3">Making
LAMMPS</A> section for more info on packages.
</P>
<P><B>Related commands:</B>

2
doc/bond_harmonic.txt
View File

@ -37,7 +37,7 @@ r0 (distance) :ul
[Restrictions:]
This bond style can only be used if LAMMPS was built with the
"molecular" package (which it is by default). See the "Making
MOLECULAR package (which it is by default). See the "Making
LAMMPS"_Section_start.html#start_3 section for more info on packages.
[Related commands:]

4
doc/bond_harmonic_shift.html
View File

@ -45,8 +45,8 @@ or <A HREF = "read_restart.html">read_restart</A> commands:
<P><B>Restrictions:</B>
</P>
<P>This bond style can only be used if LAMMPS was built with the
"user-misc" package. See the <A HREF = "Section_start.html#start_3">Making
LAMMPS</A> section for more info on packages.
USER-MISC package. See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A>
section for more info on packages.
</P>
<P><B>Related commands:</B>
</P>

4
doc/bond_harmonic_shift.txt
View File

@ -40,8 +40,8 @@ rc (distance) :ul
[Restrictions:]
This bond style can only be used if LAMMPS was built with the
"user-misc" package. See the "Making
LAMMPS"_Section_start.html#start_3 section for more info on packages.
USER-MISC package. See the "Making LAMMPS"_Section_start.html#start_3
section for more info on packages.
[Related commands:]

4
doc/bond_harmonic_shift_cut.html
View File

@ -43,8 +43,8 @@ or <A HREF = "read_restart.html">read_restart</A> commands:
<P><B>Restrictions:</B>
</P>
<P>This bond style can only be used if LAMMPS was built with the
"user-misc" package. See the <A HREF = "Section_start.html#start_3">Making
LAMMPS</A> section for more info on packages.
USER-MISC package. See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A>
section for more info on packages.
</P>
<P><B>Related commands:</B>
</P>

4
doc/bond_harmonic_shift_cut.txt
View File

@ -40,8 +40,8 @@ rc (distance) :ul
[Restrictions:]
This bond style can only be used if LAMMPS was built with the
"user-misc" package. See the "Making
LAMMPS"_Section_start.html#start_3 section for more info on packages.
USER-MISC package. See the "Making LAMMPS"_Section_start.html#start_3
section for more info on packages.
[Related commands:]

2
doc/bond_hybrid.html
View File

@ -60,7 +60,7 @@ bond types.
<P><B>Restrictions:</B>
</P>
<P>This bond style can only be used if LAMMPS was built with the
"molecular" package (which it is by default). See the <A HREF = "Section_start.html#start_3">Making
MOLECULAR package (which it is by default). See the <A HREF = "Section_start.html#start_3">Making
LAMMPS</A> section for more info on packages.
</P>
<P>Unlike other bond styles, the hybrid bond style does not store bond

2
doc/bond_hybrid.txt
View File

@ -57,7 +57,7 @@ bond types.
[Restrictions:]
This bond style can only be used if LAMMPS was built with the
"molecular" package (which it is by default). See the "Making
MOLECULAR package (which it is by default). See the "Making
LAMMPS"_Section_start.html#start_3 section for more info on packages.
Unlike other bond styles, the hybrid bond style does not store bond

2
doc/bond_morse.html
View File

@ -41,7 +41,7 @@ or <A HREF = "read_restart.html">read_restart</A> commands:
<P><B>Restrictions:</B>
</P>
<P>This bond style can only be used if LAMMPS was built with the
"molecular" package (which it is by default). See the <A HREF = "Section_start.html#start_3">Making
MOLECULAR package (which it is by default). See the <A HREF = "Section_start.html#start_3">Making
LAMMPS</A> section for more info on packages.
</P>
<P><B>Related commands:</B>

2
doc/bond_morse.txt
View File

@ -38,7 +38,7 @@ r0 (distance) :ul
[Restrictions:]
This bond style can only be used if LAMMPS was built with the
"molecular" package (which it is by default). See the "Making
MOLECULAR package (which it is by default). See the "Making
LAMMPS"_Section_start.html#start_3 section for more info on packages.
[Related commands:]

2
doc/bond_nonlinear.html
View File

@ -41,7 +41,7 @@ or <A HREF = "read_restart.html">read_restart</A> commands:
<P><B>Restrictions:</B>
</P>
<P>This bond style can only be used if LAMMPS was built with the
"molecular" package (which it is by default). See the <A HREF = "Section_start.html#start_3">Making
MOLECULAR package (which it is by default). See the <A HREF = "Section_start.html#start_3">Making
LAMMPS</A> section for more info on packages.
</P>
<P><B>Related commands:</B>

2
doc/bond_nonlinear.txt
View File

@ -38,7 +38,7 @@ lamda (distance) :ul
[Restrictions:]
This bond style can only be used if LAMMPS was built with the
"molecular" package (which it is by default). See the "Making
MOLECULAR package (which it is by default). See the "Making
LAMMPS"_Section_start.html#start_3 section for more info on packages.
[Related commands:]

2
doc/bond_quartic.html
View File

@ -76,7 +76,7 @@ delete_bonds all bond 0 remove
<P><B>Restrictions:</B>
</P>
<P>This bond style can only be used if LAMMPS was built with the
"molecular" package (which it is by default). See the <A HREF = "Section_start.html#start_3">Making
MOLECULAR package (which it is by default). See the <A HREF = "Section_start.html#start_3">Making
LAMMPS</A> section for more info on packages.
</P>
<P>The <I>quartic</I> style requires that <A HREF = "special_bonds.html">special_bonds</A>

2
doc/bond_quartic.txt
View File

@ -73,7 +73,7 @@ delete_bonds all bond 0 remove :pre
[Restrictions:]
This bond style can only be used if LAMMPS was built with the
"molecular" package (which it is by default). See the "Making
MOLECULAR package (which it is by default). See the "Making
LAMMPS"_Section_start.html#start_3 section for more info on packages.
The {quartic} style requires that "special_bonds"_special_bonds.html

2
doc/bond_style.html
View File

@ -92,7 +92,7 @@ page</A>.
<P>Bond styles can only be set for atom styles that allow bonds to be
defined.
</P>
<P>Most bond styles are part of the "molecular" package. They are only
<P>Most bond styles are part of the MOLECULAR package. They are only
enabled if LAMMPS was built with that package. See the <A HREF = "Section_start.html#start_3">Making
LAMMPS</A> section for more info on packages.
The doc pages for individual bond potentials tell if it is part of a

2
doc/bond_style.txt
View File

@ -89,7 +89,7 @@ page"_Section_commands.html#cmd_5.
Bond styles can only be set for atom styles that allow bonds to be
defined.
Most bond styles are part of the "molecular" package. They are only
Most bond styles are part of the MOLECULAR package. They are only
enabled if LAMMPS was built with that package. See the "Making
LAMMPS"_Section_start.html#start_3 section for more info on packages.
The doc pages for individual bond potentials tell if it is part of a

2
doc/bond_table.html
View File

@ -121,7 +121,7 @@ one that matches the specified keyword.
<P><B>Restrictions:</B>
</P>
<P>This bond style can only be used if LAMMPS was built with the
"molecular" package (which it is by default). See the <A HREF = "Section_start.html#start_3">Making
MOLECULAR package (which it is by default). See the <A HREF = "Section_start.html#start_3">Making
LAMMPS</A> section for more info on packages.
</P>
<P><B>Related commands:</B>

2
doc/bond_table.txt
View File

@ -118,7 +118,7 @@ one that matches the specified keyword.
[Restrictions:]
This bond style can only be used if LAMMPS was built with the
"molecular" package (which it is by default). See the "Making
MOLECULAR package (which it is by default). See the "Making
LAMMPS"_Section_start.html#start_3 section for more info on packages.
[Related commands:]

4
doc/compute_ackland_atom.html
View File

@ -58,8 +58,8 @@ of LAMMPS output options.
</P>
<P><B>Restrictions:</B>
</P>
<P>This compute is part of the "user-misc" package. It is only enabled
if LAMMPS was built with that package. See the <A HREF = "Section_start.html#start_3">Making
<P>This compute is part of the USER-MISC package. It is only enabled if
LAMMPS was built with that package. See the <A HREF = "Section_start.html#start_3">Making
LAMMPS</A> section for more info.
</P>
<P><B>Related commands:</B>

4
doc/compute_ackland_atom.txt
View File

@ -55,8 +55,8 @@ of LAMMPS output options.
[Restrictions:]
This compute is part of the "user-misc" package. It is only enabled
if LAMMPS was built with that package. See the "Making
This compute is part of the USER-MISC package. It is only enabled if
LAMMPS was built with that package. See the "Making
LAMMPS"_Section_start.html#start_3 section for more info.
[Related commands:]

2
doc/compute_damage_atom.html
View File

@ -45,7 +45,7 @@ above.
</P>
<P><B>Restrictions:</B>
</P>
<P>This compute is part of the "peri" package. It is only enabled if
<P>This compute is part of the PERI package. It is only enabled if
LAMMPS was built with that package. See the <A HREF = "Section_start.html#start_3">Making
LAMMPS</A> section for more info.
</P>

2
doc/compute_damage_atom.txt
View File

@ -42,7 +42,7 @@ above.
[Restrictions:]
This compute is part of the "peri" package. It is only enabled if
This compute is part of the PERI package. It is only enabled if
LAMMPS was built with that package. See the "Making
LAMMPS"_Section_start.html#start_3 section for more info.

2
doc/compute_event_displace.html
View File

@ -54,7 +54,7 @@ scalar value will be a 0 or 1 as explained above.
</P>
<P><B>Restrictions:</B>
</P>
<P>This command can only be used if LAMMPS was built with the "replica"
<P>This command can only be used if LAMMPS was built with the REPLICA
package. See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A> section
for more info on packages.
</P>

2
doc/compute_event_displace.txt
View File

@ -51,7 +51,7 @@ scalar value will be a 0 or 1 as explained above.
[Restrictions:]
This command can only be used if LAMMPS was built with the "replica"
This command can only be used if LAMMPS was built with the REPLICA
package. See the "Making LAMMPS"_Section_start.html#start_3 section
for more info on packages.

2
doc/compute_ke_atom_eff.html
View File

@ -69,7 +69,7 @@ output options.
</P>
<P><B>Restrictions:</B>
</P>
<P>This compute is part of the "user-eff" package. It is only enabled if
<P>This compute is part of the USER-EFF package. It is only enabled if
LAMMPS was built with that package. See the <A HREF = "Section_start.html#start_3">Making
LAMMPS</A> section for more info.
</P>

2
doc/compute_ke_atom_eff.txt
View File

@ -66,7 +66,7 @@ The per-atom vector values will be in energy "units"_units.html.
[Restrictions:]
This compute is part of the "user-eff" package. It is only enabled if
This compute is part of the USER-EFF package. It is only enabled if
LAMMPS was built with that package. See the "Making
LAMMPS"_Section_start.html#start_3 section for more info.

2
doc/compute_ke_eff.html
View File

@ -72,7 +72,7 @@ scalar value will be in energy <A HREF = "units.html">units</A>.
</P>
<P><B>Restrictions:</B>
</P>
<P>This compute is part of the "user-eff" package. It is only enabled if
<P>This compute is part of the USER-EFF package. It is only enabled if
LAMMPS was built with that package. See the <A HREF = "Section_start.html#start_3">Making
LAMMPS</A> section for more info.
</P>

2
doc/compute_ke_eff.txt
View File

@ -69,7 +69,7 @@ scalar value will be in energy "units"_units.html.
[Restrictions:]
This compute is part of the "user-eff" package. It is only enabled if
This compute is part of the USER-EFF package. It is only enabled if
LAMMPS was built with that package. See the "Making
LAMMPS"_Section_start.html#start_3 section for more info.

6
doc/compute_pe.html
View File

@ -65,9 +65,9 @@ run faster, depending on your available hardware, as discussed in
styles take the same arguments and should produce the same results,
except for round-off and precision issues.
</P>
<P>These accelerated styles are part of the "user-cuda" package. They
are only enabled if LAMMPS was built with that package. See the
<A HREF = "Section_start.html#start_3">Making LAMMPS</A> section for more info.
<P>These accelerated styles are part of the USER-CUDA package. They are
only enabled if LAMMPS was built with that package. See the <A HREF = "Section_start.html#start_3">Making
LAMMPS</A> section for more info.
</P>
<P>You can specify the accelerated styles explicitly in your input script
by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line

6
doc/compute_pe.txt
View File

@ -61,9 +61,9 @@ run faster, depending on your available hardware, as discussed in
styles take the same arguments and should produce the same results,
except for round-off and precision issues.
These accelerated styles are part of the "user-cuda" package. They
are only enabled if LAMMPS was built with that package. See the
"Making LAMMPS"_Section_start.html#start_3 section for more info.
These accelerated styles are part of the USER-CUDA package. They are
only enabled if LAMMPS was built with that package. See the "Making
LAMMPS"_Section_start.html#start_3 section for more info.
You can specify the accelerated styles explicitly in your input script
by including their suffix, or you can use the "-suffix command-line

6
doc/compute_pressure.html
View File

@ -95,9 +95,9 @@ run faster, depending on your available hardware, as discussed in
styles take the same arguments and should produce the same results,
except for round-off and precision issues.
</P>
<P>These accelerated styles are part of the "user-cuda" package. They
are only enabled if LAMMPS was built with that package. See the
<A HREF = "Section_start.html#start_3">Making LAMMPS</A> section for more info.
<P>These accelerated styles are part of the USER-CUDA package. They are
only enabled if LAMMPS was built with that package. See the <A HREF = "Section_start.html#start_3">Making
LAMMPS</A> section for more info.
</P>
<P>You can specify the accelerated styles explicitly in your input script
by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line

6
doc/compute_pressure.txt
View File

@ -91,9 +91,9 @@ run faster, depending on your available hardware, as discussed in
styles take the same arguments and should produce the same results,
except for round-off and precision issues.
These accelerated styles are part of the "user-cuda" package. They
are only enabled if LAMMPS was built with that package. See the
"Making LAMMPS"_Section_start.html#start_3 section for more info.
These accelerated styles are part of the USER-CUDA package. They are
only enabled if LAMMPS was built with that package. See the "Making
LAMMPS"_Section_start.html#start_3 section for more info.
You can specify the accelerated styles explicitly in your input script
by including their suffix, or you can use the "-suffix command-line

6
doc/compute_temp.html
View File

@ -75,9 +75,9 @@ run faster, depending on your available hardware, as discussed in
styles take the same arguments and should produce the same results,
except for round-off and precision issues.
</P>
<P>These accelerated styles are part of the "user-cuda" package. They
are only enabled if LAMMPS was built with that package. See the
<A HREF = "Section_start.html#start_3">Making LAMMPS</A> section for more info.
<P>These accelerated styles are part of the USER-CUDA package. They are
only enabled if LAMMPS was built with that package. See the <A HREF = "Section_start.html#start_3">Making
LAMMPS</A> section for more info.
</P>
<P>You can specify the accelerated styles explicitly in your input script
by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line

6
doc/compute_temp.txt
View File

@ -71,9 +71,9 @@ run faster, depending on your available hardware, as discussed in
styles take the same arguments and should produce the same results,
except for round-off and precision issues.
These accelerated styles are part of the "user-cuda" package. They
are only enabled if LAMMPS was built with that package. See the
"Making LAMMPS"_Section_start.html#start_3 section for more info.
These accelerated styles are part of the USER-CUDA package. They are
only enabled if LAMMPS was built with that package. See the "Making
LAMMPS"_Section_start.html#start_3 section for more info.
You can specify the accelerated styles explicitly in your input script
by including their suffix, or you can use the "-suffix command-line

2
doc/compute_temp_asphere.html
View File

@ -137,7 +137,7 @@ vector values will be in energy <A HREF = "units.html">units</A>.
</P>
<P><B>Restrictions:</B>
</P>
<P>This compute is part of the "asphere" package. It is only enabled if
<P>This compute is part of the ASPHERE package. It is only enabled if
LAMMPS was built with that package. See the <A HREF = "Section_start.html#start_3">Making
LAMMPS</A> section for more info.
</P>

2
doc/compute_temp_asphere.txt
View File

@ -129,7 +129,7 @@ vector values will be in energy "units"_units.html.
[Restrictions:]
This compute is part of the "asphere" package. It is only enabled if
This compute is part of the ASPHERE package. It is only enabled if
LAMMPS was built with that package. See the "Making
LAMMPS"_Section_start.html#start_3 section for more info.

2
doc/compute_temp_deform_eff.html
View File

@ -63,7 +63,7 @@ vector values will be in energy <A HREF = "units.html">units</A>.
</P>
<P><B>Restrictions:</B>
</P>
<P>This compute is part of the "user-eff" package. It is only enabled if
<P>This compute is part of the USER-EFF package. It is only enabled if
LAMMPS was built with that package. See the <A HREF = "Section_start.html#start_3">Making
LAMMPS</A> section for more info.
</P>

2
doc/compute_temp_deform_eff.txt
View File

@ -60,7 +60,7 @@ vector values will be in energy "units"_units.html.
[Restrictions:]
This compute is part of the "user-eff" package. It is only enabled if
This compute is part of the USER-EFF package. It is only enabled if
LAMMPS was built with that package. See the "Making
LAMMPS"_Section_start.html#start_3 section for more info.

2
doc/compute_temp_eff.html
View File

@ -85,7 +85,7 @@ the simulation.
</P>
<P><B>Restrictions:</B>
</P>
<P>This compute is part of the "user-eff" package. It is only enabled if
<P>This compute is part of the USER-EFF package. It is only enabled if
LAMMPS was built with that package. See the <A HREF = "Section_start.html#start_3">Making
LAMMPS</A> section for more info.
</P>

2
doc/compute_temp_eff.txt
View File

@ -82,7 +82,7 @@ the simulation.
[Restrictions:]
This compute is part of the "user-eff" package. It is only enabled if
This compute is part of the USER-EFF package. It is only enabled if
LAMMPS was built with that package. See the "Making
LAMMPS"_Section_start.html#start_3 section for more info.

6
doc/compute_temp_partial.html
View File

@ -83,9 +83,9 @@ run faster, depending on your available hardware, as discussed in
styles take the same arguments and should produce the same results,
except for round-off and precision issues.
</P>
<P>These accelerated styles are part of the "user-cuda" package. They
are only enabled if LAMMPS was built with that package. See the
<A HREF = "Section_start.html#start_3">Making LAMMPS</A> section for more info.
<P>These accelerated styles are part of the USER-CUDA package. They are
only enabled if LAMMPS was built with that package. See the <A HREF = "Section_start.html#start_3">Making
LAMMPS</A> section for more info.
</P>
<P>You can specify the accelerated styles explicitly in your input script
by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line

6
doc/compute_temp_partial.txt
View File

@ -79,9 +79,9 @@ run faster, depending on your available hardware, as discussed in
styles take the same arguments and should produce the same results,
except for round-off and precision issues.
These accelerated styles are part of the "user-cuda" package. They
are only enabled if LAMMPS was built with that package. See the
"Making LAMMPS"_Section_start.html#start_3 section for more info.
These accelerated styles are part of the USER-CUDA package. They are
only enabled if LAMMPS was built with that package. See the "Making
LAMMPS"_Section_start.html#start_3 section for more info.
You can specify the accelerated styles explicitly in your input script
by including their suffix, or you can use the "-suffix command-line

2
doc/compute_temp_region_eff.html
View File

@ -54,7 +54,7 @@ vector values will be in energy <A HREF = "units.html">units</A>.
</P>
<P><B>Restrictions:</B>
</P>
<P>This compute is part of the "user-eff" package. It is only enabled if
<P>This compute is part of the USER-EFF package. It is only enabled if
LAMMPS was built with that package. See the <A HREF = "Section_start.html#start_3">Making
LAMMPS</A> section for more info.
</P>

2
doc/compute_temp_region_eff.txt
View File

@ -51,7 +51,7 @@ vector values will be in energy "units"_units.html.
[Restrictions:]
This compute is part of the "user-eff" package. It is only enabled if
This compute is part of the USER-EFF package. It is only enabled if
LAMMPS was built with that package. See the "Making
LAMMPS"_Section_start.html#start_3 section for more info.

4
doc/compute_temp_rotate.html
View File

@ -88,8 +88,8 @@ vector values will be in energy <A HREF = "units.html">units</A>.
</P>
<P><B>Restrictions:</B>
</P>
<P>This compute is part of the "user-misc" package. It is only enabled
if LAMMPS was built with that package. See the <A HREF = "Section_start.html#start_3">Making
<P>This compute is part of the USER-MISC package. It is only enabled if
LAMMPS was built with that package. See the <A HREF = "Section_start.html#start_3">Making
LAMMPS</A> section for more info.
</P>
<P><B>Related commands:</B>

4
doc/compute_temp_rotate.txt
View File

@ -85,8 +85,8 @@ vector values will be in energy "units"_units.html.
[Restrictions:]
This compute is part of the "user-misc" package. It is only enabled
if LAMMPS was built with that package. See the "Making
This compute is part of the USER-MISC package. It is only enabled if
LAMMPS was built with that package. See the "Making
LAMMPS"_Section_start.html#start_3 section for more info.
[Related commands:]

2
doc/dihedral_charmm.html
View File

@ -70,7 +70,7 @@ need any 1-4 information.
<P><B>Restrictions:</B>
</P>
<P>This dihedral style can only be used if LAMMPS was built with the
"molecular" package (which it is by default). See the <A HREF = "Section_start.html#start_3">Making
MOLECULAR package (which it is by default). See the <A HREF = "Section_start.html#start_3">Making
LAMMPS</A> section for more info on packages.
</P>
<P><B>Related commands:</B>

2
doc/dihedral_charmm.txt
View File

@ -67,7 +67,7 @@ need any 1-4 information.
[Restrictions:]
This dihedral style can only be used if LAMMPS was built with the
"molecular" package (which it is by default). See the "Making
MOLECULAR package (which it is by default). See the "Making
LAMMPS"_Section_start.html#start_3 section for more info on packages.
[Related commands:]

2
doc/dihedral_class2.html
View File

@ -140,7 +140,7 @@ listed under a "BondBond13 Coeffs" heading and you must leave out the
<P><B>Restrictions:</B>
</P>
<P>This dihedral style can only be used if LAMMPS was built with the
"class2" package. See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A>
CLASS2 package. See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A>
section for more info on packages.
</P>
<P><B>Related commands:</B>

2
doc/dihedral_class2.txt
View File

@ -137,7 +137,7 @@ r3 (distance) :ul
[Restrictions:]
This dihedral style can only be used if LAMMPS was built with the
"class2" package. See the "Making LAMMPS"_Section_start.html#start_3
CLASS2 package. See the "Making LAMMPS"_Section_start.html#start_3
section for more info on packages.
[Related commands:]

4
doc/dihedral_cosine_shift_exp.html
View File

@ -52,8 +52,8 @@ commands:
<P><B>Restrictions:</B>
</P>
<P>This dihedral style can only be used if LAMMPS was built with the
"user-misc" package. See the <A HREF = "Section_start.html#start_3">Making
LAMMPS</A> section for more info on packages.
USER-MISC package. See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A>
section for more info on packages.
</P>
<P><B>Related commands:</B>
</P>

4
doc/dihedral_cosine_shift_exp.txt
View File

@ -49,8 +49,8 @@ A (real number) :ul
[Restrictions:]
This dihedral style can only be used if LAMMPS was built with the
"user-misc" package. See the "Making
LAMMPS"_Section_start.html#start_3 section for more info on packages.
USER-MISC package. See the "Making LAMMPS"_Section_start.html#start_3
section for more info on packages.
[Related commands:]

2
doc/dihedral_harmonic.html
View File

@ -38,7 +38,7 @@ or <A HREF = "read_restart.html">read_restart</A> commands:
<P><B>Restrictions:</B>
</P>
<P>This dihedral style can only be used if LAMMPS was built with the
"molecular" package (which it is by default). See the <A HREF = "Section_start.html#start_3">Making
MOLECULAR package (which it is by default). See the <A HREF = "Section_start.html#start_3">Making
LAMMPS</A> section for more info on packages.
</P>
<P><B>Related commands:</B>

2
doc/dihedral_harmonic.txt
View File

@ -35,7 +35,7 @@ n (integer >= 0) :ul
[Restrictions:]
This dihedral style can only be used if LAMMPS was built with the
"molecular" package (which it is by default). See the "Making
MOLECULAR package (which it is by default). See the "Making
LAMMPS"_Section_start.html#start_3 section for more info on packages.
[Related commands:]

2
doc/dihedral_helix.html
View File

@ -46,7 +46,7 @@ or <A HREF = "read_restart.html">read_restart</A> commands:
<P><B>Restrictions:</B>
</P>
<P>This dihedral style can only be used if LAMMPS was built with the
"molecular" package (which it is by default). See the <A HREF = "Section_start.html#start_3">Making
MOLECULAR package (which it is by default). See the <A HREF = "Section_start.html#start_3">Making
LAMMPS</A> section for more info on packages.
</P>
<P><B>Related commands:</B>

2
doc/dihedral_helix.txt
View File

@ -43,7 +43,7 @@ C (energy) :ul
[Restrictions:]
This dihedral style can only be used if LAMMPS was built with the
"molecular" package (which it is by default). See the "Making
MOLECULAR package (which it is by default). See the "Making
LAMMPS"_Section_start.html#start_3 section for more info on packages.
[Related commands:]

2
doc/dihedral_hybrid.html
View File

@ -78,7 +78,7 @@ for specific dihedral types.
<P><B>Restrictions:</B>
</P>
<P>This dihedral style can only be used if LAMMPS was built with the
"molecular" package (which it is by default). See the <A HREF = "Section_start.html#start_3">Making
MOLECULAR package (which it is by default). See the <A HREF = "Section_start.html#start_3">Making
LAMMPS</A> section for more info on packages.
</P>
<P>Unlike other dihedral styles, the hybrid dihedral style does not store

2
doc/dihedral_hybrid.txt
View File

@ -75,7 +75,7 @@ for specific dihedral types.
[Restrictions:]
This dihedral style can only be used if LAMMPS was built with the
"molecular" package (which it is by default). See the "Making
MOLECULAR package (which it is by default). See the "Making
LAMMPS"_Section_start.html#start_3 section for more info on packages.
Unlike other dihedral styles, the hybrid dihedral style does not store

2
doc/dihedral_multi_harmonic.html
View File

@ -40,7 +40,7 @@ or <A HREF = "read_restart.html">read_restart</A> commands:
<P><B>Restrictions:</B>
</P>
<P>This dihedral style can only be used if LAMMPS was built with the
"molecular" package (which it is by default). See the <A HREF = "Section_start.html#start_3">Making
MOLECULAR package (which it is by default). See the <A HREF = "Section_start.html#start_3">Making
LAMMPS</A> section for more info on packages.
</P>
<P><B>Related commands:</B>

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