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git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13793 f3b2605a-c512-4ea7-a41b-209d697bcdaa
This commit is contained in:
sjplimp 2015-07-30 00:11:16 +00:00
parent 544e55c80a
commit 956fb72690
9 changed files with 19 additions and 19 deletions
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8
doc/Section_python.html
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@ -860,7 +860,7 @@ variables that have to match the VMD installation on your system.</p>
source code for individual scripts for comments about what they do.</p>
<p>Here are screenshots of the vizplotgui_tool.py script in action for
different visualization package options. Click to see larger images:</p>
<a data-lightbox="group-d489478e-39a5-4946-aa41-df734694ec53"
<a data-lightbox="group-c530f122-6019-45af-8a35-e7cdc70ddb55"
href="_images/screenshot_gl.jpg"
class=""
title=""
@ -870,7 +870,7 @@ different visualization package options. Click to see larger images:</p>
width="25%"
height="auto"
alt=""/>
</a><a data-lightbox="group-cb9d008f-83b2-45c5-995b-5fee2e9e3940"
</a><a data-lightbox="group-f712591c-ea31-483b-86da-3905db788920"
href="_images/screenshot_atomeye.jpg"
class=""
title=""
@ -880,7 +880,7 @@ different visualization package options. Click to see larger images:</p>
width="25%"
height="auto"
alt=""/>
</a><a data-lightbox="group-aed8166f-776b-474a-b333-8f0bd4dca72c"
</a><a data-lightbox="group-4a2be907-5b47-4889-89de-f686acc6e915"
href="_images/screenshot_pymol.jpg"
class=""
title=""
@ -890,7 +890,7 @@ different visualization package options. Click to see larger images:</p>
width="25%"
height="auto"
alt=""/>
</a><a data-lightbox="group-737a547b-898b-4ee0-9f0f-b0c33c90e62d"
</a><a data-lightbox="group-e62d1b66-7f66-44c5-ba32-c4396e2529ed"
href="_images/screenshot_vmd.jpg"
class=""
title=""

6
doc/balance.html
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@ -265,7 +265,7 @@ the processor that owns them. The leftmost diagram is the default
partitioning of the simulation box across processors (one sub-box for
each of 16 processors); the middle diagram is after a &#8220;grid&#8221; method
has been applied.</p>
<a data-lightbox="group-e2964598-028d-4534-826b-f563dc0c3c21"
<a data-lightbox="group-1ea1982f-2af8-42b4-be30-2e7feb8e77f5"
href="_images/balance_uniform.jpg"
class=""
title=""
@ -275,7 +275,7 @@ has been applied.</p>
width="25%"
height="auto"
alt=""/>
</a><a data-lightbox="group-470f360d-5401-4045-afa2-c973c85289ed"
</a><a data-lightbox="group-a4b3cf56-edc0-41c1-a22e-57acb6d303e2"
href="_images/balance_nonuniform.jpg"
class=""
title=""
@ -285,7 +285,7 @@ has been applied.</p>
width="25%"
height="auto"
alt=""/>
</a><a data-lightbox="group-c172d1d1-f9f3-49ec-8ae6-1dd443966f5e"
</a><a data-lightbox="group-c0259437-bded-4589-b518-4425480db921"
href="_images/balance_rcb.jpg"
class=""
title=""

4
doc/compute_saed.html
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@ -182,7 +182,7 @@ position of each atom, fj are atomic scattering factors.</p>
reciprocal lattice nodes. The mesh spacing is defined either (a) by
the entire simulation domain or (b) manually using selected values as
shown in the 2D diagram below.</p>
<a data-lightbox="group-9d22982d-8353-4af6-b995-7b9cb0ec8e84"
<a data-lightbox="group-a30c5cda-68d7-4c1b-a26c-5316847c9103"
href="_images/saed_mesh.jpg"
class=""
title=""
@ -219,7 +219,7 @@ intersecting Ewald sphere. Diffraction intensities will only be
computed at the intersection of the reciprocal lattice mesh and a
<em>dR_Ewald</em> thick surface of the Ewald sphere. See the example 3D
intestiety data and the intersection of a [010] zone axis in the below image.</p>
<a data-lightbox="group-e805326d-81ce-4dc3-96f0-92fea55fcf75"
<a data-lightbox="group-8fb8943f-067b-4621-ab85-ef00bd1882fd"
href="_images/saed_ewald_intersect.jpg"
class=""
title=""

2
doc/compute_xrd.html
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@ -185,7 +185,7 @@ the optional <em>LP</em> keyword.</p>
reciprocal lattice nodes. The mesh spacing is defined either (a)
by the entire simulation domain or (b) manually using selected values as
shown in the 2D diagram below.</p>
<a data-lightbox="group-af031f59-75e1-478b-bdd8-836a4375d765"
<a data-lightbox="group-1bc3f956-68f0-4615-8f93-ca954d919b33"
href="_images/xrd_mesh.jpg"
class=""
title=""

2
doc/create_atoms.html
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@ -341,7 +341,7 @@ variable v equal &quot;(0.2*v_y*ylat * cos(v_xx/xlat * 2.0*PI*4.0/v_x) +
create_atoms 1 box var v set x xx set y yy
</pre></div>
</div>
<a data-lightbox="group-3a0414c2-3deb-4050-a25e-40a81a6ee01f"
<a data-lightbox="group-f4ec1fe6-16bb-4d3a-9ef0-ecf4b57f6ec2"
href="_images/sinusoid.jpg"
class=""
title=""

4
doc/dump_image.html
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@ -220,7 +220,7 @@ from an existing dump file, and using these dump commands in the rerun
script to generate the images/movie.</p>
<p>Here are two sample images, rendered as 1024x1024 JPEG files. Click
to see the full-size images:</p>
<DIV ALIGN=center><a data-lightbox="group-e991f56e-f1e0-422f-b7b4-39dd2059c177"
<DIV ALIGN=center><a data-lightbox="group-24b43492-ff03-4c03-99b9-12f1dbf252d5"
href="_images/dump1.jpg"
class=""
title=""
@ -230,7 +230,7 @@ to see the full-size images:</p>
width="25%"
height="auto"
alt=""/>
</a><a data-lightbox="group-b6134354-0c6f-4ab9-b05f-698e9af146f2"
</a><a data-lightbox="group-2540cc67-71aa-4053-b959-61451a4e4f0d"
href="_images/dump2.jpg"
class=""
title=""

6
doc/fix_balance.html
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@ -237,7 +237,7 @@ that owns them. The leftmost diagram is the default partitioning of
the simulation box across processors (one sub-box for each of 16
processors); the middle diagram is after a &#8220;grid&#8221; method has been
applied.</p>
<a data-lightbox="group-5858f7eb-df45-46c3-bcdc-5c1ca6eb3a05"
<a data-lightbox="group-85269663-2cc5-4073-9d2b-e7fb01db4ec3"
href="_images/balance_uniform.jpg"
class=""
title=""
@ -247,7 +247,7 @@ applied.</p>
width="25%"
height="auto"
alt=""/>
</a><a data-lightbox="group-ec0fc6bd-5c66-4b42-9483-5a38c0a7cbc1"
</a><a data-lightbox="group-349a1bab-83d0-42b4-85c7-81050f4e3d61"
href="_images/balance_nonuniform.jpg"
class=""
title=""
@ -257,7 +257,7 @@ applied.</p>
width="25%"
height="auto"
alt=""/>
</a><a data-lightbox="group-72ca979a-6909-4317-9cd2-3d1cb2d8cd2a"
</a><a data-lightbox="group-c6a44ae9-1930-4d73-95ea-e4e0a56b953a"
href="_images/balance_rcb.jpg"
class=""
title=""

4
doc/neb.html
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@ -479,7 +479,7 @@ barrier.</p>
neb_combine.py script run on the dump files produced by the two
example input scripts in examples/neb. Click on them to see a larger
image.</p>
<a data-lightbox="group-b0f8ddb5-eab8-4e98-8121-4cabe31e66a9"
<a data-lightbox="group-5916a3a1-a368-4db3-a9ea-37c4eef93ee3"
href="_images/hop1.jpg"
class=""
title=""
@ -489,7 +489,7 @@ image.</p>
width="25%"
height="auto"
alt=""/>
</a><a data-lightbox="group-fb508994-01ff-4b9d-a2b2-703bef26e049"
</a><a data-lightbox="group-ec426f39-1525-43c6-a3b4-d2aac49c6e80"
href="_images/hop2.jpg"
class=""
title=""

2
doc/searchindex.js
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