add a "coeffs" keyword to the info command for debugging "All XXX coeffs are not set" errors.

This commit is contained in:
Axel Kohlmeyer 2018-01-09 12:47:33 -05:00
parent 1bd9e175e9
commit 91107cc1f3
2 changed files with 91 additions and 15 deletions

View File

@ -12,7 +12,7 @@ info command :h3
info args :pre
args = one or more of the following keywords: {out}, {all}, {system}, {memory}, {communication}, {computes}, {dumps}, {fixes}, {groups}, {regions}, {variables}, {styles}, {time}, or {configuration}
args = one or more of the following keywords: {out}, {all}, {system}, {memory}, {communication}, {computes}, {dumps}, {fixes}, {groups}, {regions}, {variables}, {coeffs}, {styles}, {time}, or {configuration}
{out} values = {screen}, {log}, {append} filename, {overwrite} filename
{styles} values = {all}, {angle}, {atom}, {bond}, {compute}, {command}, {dump}, {dihedral}, {fix}, {improper}, {integrate}, {kspace}, {minimize}, {pair}, {region} :ul
@ -81,6 +81,11 @@ The {variables} category prints a list of all currently defined
variables, their names, styles, definition and last computed value, if
available.
The {coeffs} category prints a list for each defined force style
(pair, bond, angle, dihedral, improper) indicating which of the
corresponding coefficients have been set. This can be very helpful
to debug error messages like "All pair coeffs are not set".
The {styles} category prints the list of styles available in the
current LAMMPS binary. It supports one of the following options
to control which category of styles is printed out:

View File

@ -28,6 +28,10 @@
#include "force.h"
#include "pair.h"
#include "pair_hybrid.h"
#include "bond.h"
#include "angle.h"
#include "dihedral.h"
#include "improper.h"
#include "group.h"
#include "input.h"
#include "modify.h"
@ -75,20 +79,21 @@ enum {COMPUTES=1<<0,
VARIABLES=1<<8,
SYSTEM=1<<9,
COMM=1<<10,
ATOM_STYLES=1<<11,
INTEGRATE_STYLES=1<<12,
MINIMIZE_STYLES=1<<13,
PAIR_STYLES=1<<14,
BOND_STYLES=1<<15,
ANGLE_STYLES=1<<16,
DIHEDRAL_STYLES=1<<17,
IMPROPER_STYLES=1<<18,
KSPACE_STYLES=1<<19,
FIX_STYLES=1<<20,
COMPUTE_STYLES=1<<21,
REGION_STYLES=1<<22,
DUMP_STYLES=1<<23,
COMMAND_STYLES=1<<24,
COEFFS=1<<11,
ATOM_STYLES=1<<12,
INTEGRATE_STYLES=1<<13,
MINIMIZE_STYLES=1<<14,
PAIR_STYLES=1<<15,
BOND_STYLES=1<<16,
ANGLE_STYLES=1<<17,
DIHEDRAL_STYLES=1<<18,
IMPROPER_STYLES=1<<19,
KSPACE_STYLES=1<<20,
FIX_STYLES=1<<21,
COMPUTE_STYLES=1<<22,
REGION_STYLES=1<<23,
DUMP_STYLES=1<<24,
COMMAND_STYLES=1<<25,
ALL=~0};
static const int STYLES = ATOM_STYLES | INTEGRATE_STYLES | MINIMIZE_STYLES
@ -183,6 +188,9 @@ void Info::command(int narg, char **arg)
} else if (strncmp(arg[idx],"system",3) == 0) {
flags |= SYSTEM;
++idx;
} else if (strncmp(arg[idx],"coeffs",3) == 0) {
flags |= COEFFS;
++idx;
} else if (strncmp(arg[idx],"styles",3) == 0) {
if (idx+1 < narg) {
++idx;
@ -440,6 +448,69 @@ void Info::command(int narg, char **arg)
}
}
if (domain->box_exist && (flags & COEFFS)) {
Pair *pair=force->pair;
fprintf(out,"\nCoeff information:\n");
if (pair) {
fprintf(out,"Pair Coeffs:\n");
for (int i=1; i <= atom->ntypes; ++i)
for (int j=i; j <= atom->ntypes; ++j) {
fprintf(out,"%3d %3d :",i,j);
if (pair->allocated && pair->setflag[i][j]) fputs(" is set\n",out);
else fputs (" is not set\n",out);
}
}
if (force->bond) {
Bond *bond=force->bond;
if (bond) {
fprintf(out,"Bond Coeffs:\n");
for (int i=1; i <= atom->nbondtypes; ++i) {
fprintf(out,"%3d :",i);
if (bond->allocated && bond->setflag[i]) fputs(" is set\n",out);
else fputs (" is not set\n",out);
}
}
}
if (force->angle) {
Angle *angle=force->angle;
if (angle) {
fprintf(out,"Angle Coeffs:\n");
for (int i=1; i <= atom->nangletypes; ++i) {
fprintf(out,"%3d :",i);
if (angle->allocated && angle->setflag[i]) fputs(" is set\n",out);
else fputs (" is not set\n",out);
}
}
}
if (force->dihedral) {
Dihedral *dihedral=force->dihedral;
if (dihedral) {
fprintf(out,"Dihedral Coeffs:\n");
for (int i=1; i <= atom->ndihedraltypes; ++i) {
fprintf(out,"%3d :",i);
if (dihedral->allocated && dihedral->setflag[i]) fputs(" is set\n",out);
else fputs (" is not set\n",out);
}
}
}
if (force->improper) {
Improper *b=force->improper;
if (b) {
fprintf(out,"Improper Coeffs:\n");
for (int i=1; i <= atom->nimpropertypes; ++i) {
fprintf(out,"%3d :",i);
if (b->allocated && b->setflag[i]) fputs(" is set\n",out);
else fputs (" is not set\n",out);
}
}
}
}
if (flags & GROUPS) {
int ngroup = group->ngroup;
char **names = group->names;