From 90934f2b3932a73516bc3371c4fc345a7dacd40d Mon Sep 17 00:00:00 2001 From: sjplimp Date: Thu, 14 Feb 2013 16:24:40 +0000 Subject: [PATCH] git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9484 f3b2605a-c512-4ea7-a41b-209d697bcdaa --- doc/compute_stress_atom.html | 11 ++++++++--- doc/compute_stress_atom.txt | 10 +++++++--- 2 files changed, 15 insertions(+), 6 deletions(-) diff --git a/doc/compute_stress_atom.html b/doc/compute_stress_atom.html index 71e7444d75..cd469dcc7a 100644 --- a/doc/compute_stress_atom.html +++ b/doc/compute_stress_atom.html @@ -76,9 +76,10 @@ pairwise interactions between 1-4 atoms. The virial contribution of these terms is included in the pair virial, not the dihedral virial.

The KSpace contribution is calculated using the method in -(Heyes) for the Ewald method and a related method for PPPM, -as specified by the kspace_style pppm command. -For PPPM, the calcluation requires 6 extra FFTs each timestep that +(Heyes) for the Ewald method and by the methodology described +in (Sirk) for PPPM. The choice of KSpace solver is specified +by the kspace_style pppm command. Note that for +PPPM, the calcluation requires 6 extra FFTs each timestep that per-atom stress is calculated. Thus it can significantly increase the cost of the PPPM calculation if it is needed on a large fraction of the simulation timesteps. @@ -127,4 +128,8 @@ options.

(Heyes) Heyes, Phys Rev B 49, 755 (1994),

+ + +

(Sirk) Sirk, Brown, Moore, J Chem Phys, 138, 064505 (2013). +

diff --git a/doc/compute_stress_atom.txt b/doc/compute_stress_atom.txt index 8e1d40d0a1..eb90f18fd8 100644 --- a/doc/compute_stress_atom.txt +++ b/doc/compute_stress_atom.txt @@ -73,9 +73,10 @@ pairwise interactions between 1-4 atoms. The virial contribution of these terms is included in the pair virial, not the dihedral virial. The KSpace contribution is calculated using the method in -"(Heyes)"_#Heyes for the Ewald method and a related method for PPPM, -as specified by the "kspace_style pppm"_kspace_style.html command. -For PPPM, the calcluation requires 6 extra FFTs each timestep that +"(Heyes)"_#Heyes for the Ewald method and by the methodology described +in "(Sirk)"_#Sirk for PPPM. The choice of KSpace solver is specified +by the "kspace_style pppm"_kspace_style.html command. Note that for +PPPM, the calcluation requires 6 extra FFTs each timestep that per-atom stress is calculated. Thus it can significantly increase the cost of the PPPM calculation if it is needed on a large fraction of the simulation timesteps. @@ -122,3 +123,6 @@ The per-atom array values will be in pressure*volume :link(Heyes) [(Heyes)] Heyes, Phys Rev B 49, 755 (1994), + +:link(Sirk) +[(Sirk)] Sirk, Brown, Moore, J Chem Phys, 138, 064505 (2013).