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Minor update to docu

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Oliver Henrich 2017-04-04 19:54:22 +01:00
parent ac1aa9edea
commit 8993daaa31
2 changed files with 3 additions and 5 deletions
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4
doc/src/Section_packages.txt
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@ -1308,8 +1308,8 @@ oxdna/..."_pair_oxdna.html, "pair_style
oxdna2/..."_pair_oxdna2.html, "fix
nve/dotc/langevin"_fix_nve_dotc_langevin.html
Author: Oliver Henrich at the University of Strathclyde, Glasgow, UK and
University of Edinburgh (ohenrich@ph.ed.ac.uk).
Author: Oliver Henrich at the University of Strathclyde, Glasgow
(oliver.henrich at strath.ac.uk, also ohenrich at ph.ed.ac.uk).
Contact him directly if you have any questions.
:line

4
doc/src/bond_oxdna.txt
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@ -46,9 +46,7 @@ for excluded volume interaction {oxdna/excv}, stacking {oxdna/stk}, cross-stacki
and coaxial stacking interaction {oxdna/coaxstk} as well as hydrogen-bonding interaction {oxdna/hbond} (see also documentation of
"pair_style oxdna/excv"_pair_oxdna.html). For the oxDNA2 "(Snodin)"_#oxdna2 bond style the analogous pair styles and an additional Debye-Hueckel pair
style {oxdna2/dh} have to be defined.
The coefficients
in the above example have to be kept fixed and cannot be changed without reparametrizing the entire model.
The coefficients in the above example have to be kept fixed and cannot be changed without reparametrizing the entire model.
Example input and data files for DNA duplexes can be found in examples/USER/cgdna/examples/oxDNA/ and /oxDNA2/.
A simple python setup tool which creates single straight or helical DNA strands,