update dependencies for colvars library

lib/colvars/Makefile.deps

@@ -1,9 +1,9 @@
 
 $(COLVARS_OBJ_DIR)colvaratoms.o: colvaratoms.cpp colvarmodule.h \
- colvars_version.h colvartypes.h colvarproxy.h colvarvalue.h \
+ colvars_version.h colvarproxy.h colvarvalue.h colvartypes.h \
  colvarparse.h colvaratoms.h colvardeps.h
 $(COLVARS_OBJ_DIR)colvarbias_abf.o: colvarbias_abf.cpp colvarmodule.h \
- colvars_version.h colvartypes.h colvarproxy.h colvarvalue.h colvar.h \
+ colvars_version.h colvarproxy.h colvarvalue.h colvartypes.h colvar.h \
  colvarparse.h colvardeps.h lepton/include/Lepton.h \
  lepton/include/lepton/CompiledExpression.h \
  lepton/include/lepton/ExpressionTreeNode.h \
@@ -16,9 +16,9 @@ $(COLVARS_OBJ_DIR)colvarbias_abf.o: colvarbias_abf.cpp colvarmodule.h \
  lepton/include/lepton/ParsedExpression.h lepton/include/lepton/Parser.h \
  colvarbias_abf.h colvarbias.h colvargrid.h colvar_UIestimator.h
 $(COLVARS_OBJ_DIR)colvarbias_alb.o: colvarbias_alb.cpp colvarmodule.h \
- colvars_version.h colvartypes.h colvarproxy.h colvarvalue.h \
+ colvars_version.h colvarbias.h colvar.h colvarvalue.h colvartypes.h \
- colvarbias_alb.h colvar.h colvarparse.h colvardeps.h \
+ colvarparse.h colvardeps.h lepton/include/Lepton.h \
- lepton/include/Lepton.h lepton/include/lepton/CompiledExpression.h \
+ lepton/include/lepton/CompiledExpression.h \
  lepton/include/lepton/ExpressionTreeNode.h \
  lepton/include/lepton/windowsIncludes.h \
  lepton/include/lepton/CustomFunction.h \
@@ -27,9 +27,9 @@ $(COLVARS_OBJ_DIR)colvarbias_alb.o: colvarbias_alb.cpp colvarmodule.h \
  lepton/include/lepton/Operation.h lepton/include/lepton/CustomFunction.h \
  lepton/include/lepton/Exception.h \
  lepton/include/lepton/ParsedExpression.h lepton/include/lepton/Parser.h \
- colvarbias.h
+ colvarbias_alb.h
 $(COLVARS_OBJ_DIR)colvarbias.o: colvarbias.cpp colvarmodule.h \
- colvars_version.h colvartypes.h colvarproxy.h colvarvalue.h colvarbias.h \
+ colvars_version.h colvarproxy.h colvarvalue.h colvartypes.h colvarbias.h \
  colvar.h colvarparse.h colvardeps.h lepton/include/Lepton.h \
  lepton/include/lepton/CompiledExpression.h \
  lepton/include/lepton/ExpressionTreeNode.h \
@@ -42,8 +42,8 @@ $(COLVARS_OBJ_DIR)colvarbias.o: colvarbias.cpp colvarmodule.h \
  lepton/include/lepton/ParsedExpression.h lepton/include/lepton/Parser.h \
  colvargrid.h
 $(COLVARS_OBJ_DIR)colvarbias_histogram.o: colvarbias_histogram.cpp \
- colvarmodule.h colvars_version.h colvartypes.h colvarproxy.h \
+ colvarmodule.h colvars_version.h colvarproxy.h colvarvalue.h \
- colvarvalue.h colvar.h colvarparse.h colvardeps.h \
+ colvartypes.h colvar.h colvarparse.h colvardeps.h \
  lepton/include/Lepton.h lepton/include/lepton/CompiledExpression.h \
  lepton/include/lepton/ExpressionTreeNode.h \
  lepton/include/lepton/windowsIncludes.h \
@@ -54,9 +54,9 @@ $(COLVARS_OBJ_DIR)colvarbias_histogram.o: colvarbias_histogram.cpp \
  lepton/include/lepton/Exception.h \
  lepton/include/lepton/ParsedExpression.h lepton/include/lepton/Parser.h \
  colvarbias_histogram.h colvarbias.h colvargrid.h
-$(COLVARS_OBJ_DIR)colvarbias_meta.o: colvarbias_meta.cpp colvar.h \
+$(COLVARS_OBJ_DIR)colvarbias_meta.o: colvarbias_meta.cpp colvarmodule.h \
- colvarmodule.h colvars_version.h colvartypes.h colvarproxy.h \
+ colvars_version.h colvarproxy.h colvarvalue.h colvartypes.h colvar.h \
- colvarvalue.h colvarparse.h colvardeps.h lepton/include/Lepton.h \
+ colvarparse.h colvardeps.h lepton/include/Lepton.h \
  lepton/include/lepton/CompiledExpression.h \
  lepton/include/lepton/ExpressionTreeNode.h \
  lepton/include/lepton/windowsIncludes.h \
@@ -68,8 +68,8 @@ $(COLVARS_OBJ_DIR)colvarbias_meta.o: colvarbias_meta.cpp colvar.h \
  lepton/include/lepton/ParsedExpression.h lepton/include/lepton/Parser.h \
  colvarbias_meta.h colvarbias.h colvargrid.h
 $(COLVARS_OBJ_DIR)colvarbias_restraint.o: colvarbias_restraint.cpp \
- colvarmodule.h colvars_version.h colvartypes.h colvarproxy.h \
+ colvarmodule.h colvars_version.h colvarproxy.h colvarvalue.h \
- colvarvalue.h colvarbias_restraint.h colvarbias.h colvar.h colvarparse.h \
+ colvartypes.h colvarbias_restraint.h colvarbias.h colvar.h colvarparse.h \
  colvardeps.h lepton/include/Lepton.h \
  lepton/include/lepton/CompiledExpression.h \
  lepton/include/lepton/ExpressionTreeNode.h \
@@ -81,9 +81,9 @@ $(COLVARS_OBJ_DIR)colvarbias_restraint.o: colvarbias_restraint.cpp \
  lepton/include/lepton/Exception.h \
  lepton/include/lepton/ParsedExpression.h lepton/include/lepton/Parser.h
 $(COLVARS_OBJ_DIR)colvarcomp_angles.o: colvarcomp_angles.cpp \
- colvarmodule.h colvars_version.h colvartypes.h colvarproxy.h \
+ colvarmodule.h colvars_version.h colvar.h colvarvalue.h colvartypes.h \
- colvarvalue.h colvar.h colvarparse.h colvardeps.h \
+ colvarparse.h colvardeps.h lepton/include/Lepton.h \
- lepton/include/Lepton.h lepton/include/lepton/CompiledExpression.h \
+ lepton/include/lepton/CompiledExpression.h \
  lepton/include/lepton/ExpressionTreeNode.h \
  lepton/include/lepton/windowsIncludes.h \
  lepton/include/lepton/CustomFunction.h \
@@ -92,10 +92,10 @@ $(COLVARS_OBJ_DIR)colvarcomp_angles.o: colvarcomp_angles.cpp \
  lepton/include/lepton/Operation.h lepton/include/lepton/CustomFunction.h \
  lepton/include/lepton/Exception.h \
  lepton/include/lepton/ParsedExpression.h lepton/include/lepton/Parser.h \
- colvarcomp.h colvaratoms.h
+ colvarcomp.h colvaratoms.h colvarproxy.h
 $(COLVARS_OBJ_DIR)colvarcomp_coordnums.o: colvarcomp_coordnums.cpp \
- colvarmodule.h colvars_version.h colvartypes.h colvarproxy.h \
+ colvarmodule.h colvars_version.h colvarparse.h colvarvalue.h \
- colvarvalue.h colvarparse.h colvaratoms.h colvardeps.h colvar.h \
+ colvartypes.h colvaratoms.h colvarproxy.h colvardeps.h colvar.h \
  lepton/include/Lepton.h lepton/include/lepton/CompiledExpression.h \
  lepton/include/lepton/ExpressionTreeNode.h \
  lepton/include/lepton/windowsIncludes.h \
@@ -107,59 +107,7 @@ $(COLVARS_OBJ_DIR)colvarcomp_coordnums.o: colvarcomp_coordnums.cpp \
  lepton/include/lepton/ParsedExpression.h lepton/include/lepton/Parser.h \
  colvarcomp.h
 $(COLVARS_OBJ_DIR)colvarcomp.o: colvarcomp.cpp colvarmodule.h \
- colvars_version.h colvartypes.h colvarproxy.h colvarvalue.h colvar.h \
+ colvars_version.h colvarvalue.h colvartypes.h colvar.h colvarparse.h \
- colvarparse.h colvardeps.h lepton/include/Lepton.h \
- lepton/include/lepton/CompiledExpression.h \
- lepton/include/lepton/ExpressionTreeNode.h \
- lepton/include/lepton/windowsIncludes.h \
- lepton/include/lepton/CustomFunction.h \
- lepton/include/lepton/ExpressionProgram.h \
- lepton/include/lepton/ExpressionTreeNode.h \
- lepton/include/lepton/Operation.h lepton/include/lepton/CustomFunction.h \
- lepton/include/lepton/Exception.h \
- lepton/include/lepton/ParsedExpression.h lepton/include/lepton/Parser.h \
- colvarcomp.h colvaratoms.h
-$(COLVARS_OBJ_DIR)colvarcomp_distances.o: colvarcomp_distances.cpp \
- colvarmodule.h colvars_version.h colvartypes.h colvarproxy.h \
- colvarvalue.h colvarparse.h colvar.h colvardeps.h \
- lepton/include/Lepton.h lepton/include/lepton/CompiledExpression.h \
- lepton/include/lepton/ExpressionTreeNode.h \
- lepton/include/lepton/windowsIncludes.h \
- lepton/include/lepton/CustomFunction.h \
- lepton/include/lepton/ExpressionProgram.h \
- lepton/include/lepton/ExpressionTreeNode.h \
- lepton/include/lepton/Operation.h lepton/include/lepton/CustomFunction.h \
- lepton/include/lepton/Exception.h \
- lepton/include/lepton/ParsedExpression.h lepton/include/lepton/Parser.h \
- colvarcomp.h colvaratoms.h
-$(COLVARS_OBJ_DIR)colvarcomp_protein.o: colvarcomp_protein.cpp \
- colvarmodule.h colvars_version.h colvartypes.h colvarproxy.h \
- colvarvalue.h colvarparse.h colvar.h colvardeps.h \
- lepton/include/Lepton.h lepton/include/lepton/CompiledExpression.h \
- lepton/include/lepton/ExpressionTreeNode.h \
- lepton/include/lepton/windowsIncludes.h \
- lepton/include/lepton/CustomFunction.h \
- lepton/include/lepton/ExpressionProgram.h \
- lepton/include/lepton/ExpressionTreeNode.h \
- lepton/include/lepton/Operation.h lepton/include/lepton/CustomFunction.h \
- lepton/include/lepton/Exception.h \
- lepton/include/lepton/ParsedExpression.h lepton/include/lepton/Parser.h \
- colvarcomp.h colvaratoms.h
-$(COLVARS_OBJ_DIR)colvarcomp_rotations.o: colvarcomp_rotations.cpp \
- colvarmodule.h colvars_version.h colvartypes.h colvarproxy.h \
- colvarvalue.h colvarparse.h colvar.h colvardeps.h \
- lepton/include/Lepton.h lepton/include/lepton/CompiledExpression.h \
- lepton/include/lepton/ExpressionTreeNode.h \
- lepton/include/lepton/windowsIncludes.h \
- lepton/include/lepton/CustomFunction.h \
- lepton/include/lepton/ExpressionProgram.h \
- lepton/include/lepton/ExpressionTreeNode.h \
- lepton/include/lepton/Operation.h lepton/include/lepton/CustomFunction.h \
- lepton/include/lepton/Exception.h \
- lepton/include/lepton/ParsedExpression.h lepton/include/lepton/Parser.h \
- colvarcomp.h colvaratoms.h
-$(COLVARS_OBJ_DIR)colvar.o: colvar.cpp colvarmodule.h colvars_version.h \
- colvartypes.h colvarproxy.h colvarvalue.h colvarparse.h colvar.h \
  colvardeps.h lepton/include/Lepton.h \
  lepton/include/lepton/CompiledExpression.h \
  lepton/include/lepton/ExpressionTreeNode.h \
@@ -170,12 +118,9 @@ $(COLVARS_OBJ_DIR)colvar.o: colvar.cpp colvarmodule.h colvars_version.h \
  lepton/include/lepton/Operation.h lepton/include/lepton/CustomFunction.h \
  lepton/include/lepton/Exception.h \
  lepton/include/lepton/ParsedExpression.h lepton/include/lepton/Parser.h \
- colvarcomp.h colvaratoms.h colvarscript.h colvarbias.h
+ colvarcomp.h colvaratoms.h colvarproxy.h
-$(COLVARS_OBJ_DIR)colvardeps.o: colvardeps.cpp colvardeps.h \
+$(COLVARS_OBJ_DIR)colvarcomp_distances.o: colvarcomp_distances.cpp \
- colvarmodule.h colvars_version.h colvartypes.h colvarproxy.h \
+ colvarmodule.h colvars_version.h colvarvalue.h colvartypes.h \
- colvarvalue.h colvarparse.h
-$(COLVARS_OBJ_DIR)colvargrid.o: colvargrid.cpp colvarmodule.h \
- colvars_version.h colvartypes.h colvarproxy.h colvarvalue.h \
  colvarparse.h colvar.h colvardeps.h lepton/include/Lepton.h \
  lepton/include/lepton/CompiledExpression.h \
  lepton/include/lepton/ExpressionTreeNode.h \
@@ -186,9 +131,9 @@ $(COLVARS_OBJ_DIR)colvargrid.o: colvargrid.cpp colvarmodule.h \
  lepton/include/lepton/Operation.h lepton/include/lepton/CustomFunction.h \
  lepton/include/lepton/Exception.h \
  lepton/include/lepton/ParsedExpression.h lepton/include/lepton/Parser.h \
- colvarcomp.h colvaratoms.h colvargrid.h
+ colvarcomp.h colvaratoms.h colvarproxy.h
-$(COLVARS_OBJ_DIR)colvarmodule.o: colvarmodule.cpp colvarmodule.h \
+$(COLVARS_OBJ_DIR)colvarcomp_protein.o: colvarcomp_protein.cpp \
- colvars_version.h colvartypes.h colvarproxy.h colvarvalue.h \
+ colvarmodule.h colvars_version.h colvarvalue.h colvartypes.h \
  colvarparse.h colvar.h colvardeps.h lepton/include/Lepton.h \
  lepton/include/lepton/CompiledExpression.h \
  lepton/include/lepton/ExpressionTreeNode.h \
@@ -199,14 +144,67 @@ $(COLVARS_OBJ_DIR)colvarmodule.o: colvarmodule.cpp colvarmodule.h \
  lepton/include/lepton/Operation.h lepton/include/lepton/CustomFunction.h \
  lepton/include/lepton/Exception.h \
  lepton/include/lepton/ParsedExpression.h lepton/include/lepton/Parser.h \
+ colvarcomp.h colvaratoms.h colvarproxy.h
+$(COLVARS_OBJ_DIR)colvarcomp_rotations.o: colvarcomp_rotations.cpp \
+ colvarmodule.h colvars_version.h colvarvalue.h colvartypes.h \
+ colvarparse.h colvar.h colvardeps.h lepton/include/Lepton.h \
+ lepton/include/lepton/CompiledExpression.h \
+ lepton/include/lepton/ExpressionTreeNode.h \
+ lepton/include/lepton/windowsIncludes.h \
+ lepton/include/lepton/CustomFunction.h \
+ lepton/include/lepton/ExpressionProgram.h \
+ lepton/include/lepton/ExpressionTreeNode.h \
+ lepton/include/lepton/Operation.h lepton/include/lepton/CustomFunction.h \
+ lepton/include/lepton/Exception.h \
+ lepton/include/lepton/ParsedExpression.h lepton/include/lepton/Parser.h \
+ colvarcomp.h colvaratoms.h colvarproxy.h
+$(COLVARS_OBJ_DIR)colvar.o: colvar.cpp colvarmodule.h colvars_version.h \
+ colvarvalue.h colvartypes.h colvarparse.h colvar.h colvardeps.h \
+ lepton/include/Lepton.h lepton/include/lepton/CompiledExpression.h \
+ lepton/include/lepton/ExpressionTreeNode.h \
+ lepton/include/lepton/windowsIncludes.h \
+ lepton/include/lepton/CustomFunction.h \
+ lepton/include/lepton/ExpressionProgram.h \
+ lepton/include/lepton/ExpressionTreeNode.h \
+ lepton/include/lepton/Operation.h lepton/include/lepton/CustomFunction.h \
+ lepton/include/lepton/Exception.h \
+ lepton/include/lepton/ParsedExpression.h lepton/include/lepton/Parser.h \
+ colvarcomp.h colvaratoms.h colvarproxy.h colvarscript.h colvarbias.h
+$(COLVARS_OBJ_DIR)colvardeps.o: colvardeps.cpp colvarmodule.h \
+ colvars_version.h colvarproxy.h colvarvalue.h colvartypes.h colvardeps.h \
+ colvarparse.h
+$(COLVARS_OBJ_DIR)colvargrid.o: colvargrid.cpp colvarmodule.h \
+ colvars_version.h colvarvalue.h colvartypes.h colvarparse.h colvar.h \
+ colvardeps.h lepton/include/Lepton.h \
+ lepton/include/lepton/CompiledExpression.h \
+ lepton/include/lepton/ExpressionTreeNode.h \
+ lepton/include/lepton/windowsIncludes.h \
+ lepton/include/lepton/CustomFunction.h \
+ lepton/include/lepton/ExpressionProgram.h \
+ lepton/include/lepton/ExpressionTreeNode.h \
+ lepton/include/lepton/Operation.h lepton/include/lepton/CustomFunction.h \
+ lepton/include/lepton/Exception.h \
+ lepton/include/lepton/ParsedExpression.h lepton/include/lepton/Parser.h \
+ colvarcomp.h colvaratoms.h colvarproxy.h colvargrid.h
+$(COLVARS_OBJ_DIR)colvarmodule.o: colvarmodule.cpp colvarmodule.h \
+ colvars_version.h colvarparse.h colvarvalue.h colvartypes.h \
+ colvarproxy.h colvar.h colvardeps.h lepton/include/Lepton.h \
+ lepton/include/lepton/CompiledExpression.h \
+ lepton/include/lepton/ExpressionTreeNode.h \
+ lepton/include/lepton/windowsIncludes.h \
+ lepton/include/lepton/CustomFunction.h \
+ lepton/include/lepton/ExpressionProgram.h \
+ lepton/include/lepton/ExpressionTreeNode.h \
+ lepton/include/lepton/Operation.h lepton/include/lepton/CustomFunction.h \
+ lepton/include/lepton/Exception.h \
+ lepton/include/lepton/ParsedExpression.h lepton/include/lepton/Parser.h \
  colvarbias.h colvarbias_abf.h colvargrid.h colvar_UIestimator.h \
  colvarbias_alb.h colvarbias_histogram.h colvarbias_meta.h \
  colvarbias_restraint.h colvarscript.h colvaratoms.h colvarcomp.h
 $(COLVARS_OBJ_DIR)colvarparse.o: colvarparse.cpp colvarmodule.h \
- colvars_version.h colvartypes.h colvarproxy.h colvarvalue.h \
+ colvars_version.h colvarvalue.h colvartypes.h colvarparse.h
- colvarparse.h
 $(COLVARS_OBJ_DIR)colvarproxy.o: colvarproxy.cpp colvarmodule.h \
- colvars_version.h colvartypes.h colvarproxy.h colvarvalue.h \
+ colvars_version.h colvarproxy.h colvarvalue.h colvartypes.h \
  colvarscript.h colvarbias.h colvar.h colvarparse.h colvardeps.h \
  lepton/include/Lepton.h lepton/include/lepton/CompiledExpression.h \
  lepton/include/lepton/ExpressionTreeNode.h \
@@ -219,9 +217,9 @@ $(COLVARS_OBJ_DIR)colvarproxy.o: colvarproxy.cpp colvarmodule.h \
  lepton/include/lepton/ParsedExpression.h lepton/include/lepton/Parser.h \
  colvaratoms.h
 $(COLVARS_OBJ_DIR)colvarscript.o: colvarscript.cpp colvarscript.h \
- colvarmodule.h colvars_version.h colvartypes.h colvarproxy.h \
+ colvarmodule.h colvars_version.h colvarvalue.h colvartypes.h \
- colvarvalue.h colvarbias.h colvar.h colvarparse.h colvardeps.h \
+ colvarbias.h colvar.h colvarparse.h colvardeps.h lepton/include/Lepton.h \
- lepton/include/Lepton.h lepton/include/lepton/CompiledExpression.h \
+ lepton/include/lepton/CompiledExpression.h \
  lepton/include/lepton/ExpressionTreeNode.h \
  lepton/include/lepton/windowsIncludes.h \
  lepton/include/lepton/CustomFunction.h \
@@ -229,9 +227,9 @@ $(COLVARS_OBJ_DIR)colvarscript.o: colvarscript.cpp colvarscript.h \
  lepton/include/lepton/ExpressionTreeNode.h \
  lepton/include/lepton/Operation.h lepton/include/lepton/CustomFunction.h \
  lepton/include/lepton/Exception.h \
- lepton/include/lepton/ParsedExpression.h lepton/include/lepton/Parser.h
+ lepton/include/lepton/ParsedExpression.h lepton/include/lepton/Parser.h \
+ colvarproxy.h
 $(COLVARS_OBJ_DIR)colvartypes.o: colvartypes.cpp colvarmodule.h \
- colvars_version.h colvartypes.h colvarproxy.h colvarvalue.h \
+ colvars_version.h colvartypes.h colvarparse.h colvarvalue.h
- colvarparse.h
 $(COLVARS_OBJ_DIR)colvarvalue.o: colvarvalue.cpp colvarmodule.h \
- colvars_version.h colvartypes.h colvarproxy.h colvarvalue.h
+ colvars_version.h colvarvalue.h colvartypes.h