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Create in.slater
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# Bulk polyelectrolyte as described in section IV of J. Chem. Phys. 125, 224107 (2006)
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boundary p p p
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units lj
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atom_style charge
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region my_sim_box block 0.0 10.0 0.0 10.0 0.0 10.0
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create_box 3 my_sim_box
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create_atoms 1 random 2804 100 my_sim_box
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create_atoms 2 random 98 200 my_sim_box
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create_atoms 3 random 98 300 my_sim_box
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set type 2 charge -1.0
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set type 3 charge 1.0
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comm_modify mode single vel yes
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mass 1 1.0
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mass 2 1.0
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mass 3 1.0
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pair_style hybrid/overlay dpd 1.0 1.0 245455 coul/slater/long 0.929 3.0
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pair_coeff * * dpd 25.0 4.5
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pair_coeff * * coul/slater/long
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kspace_style ewald 0.00001
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dielectric 1.0
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neighbor 2.0 bin
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neigh_modify every 1 delay 0 check no once no
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timestep 0.02
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fix 2 all nve
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thermo 10
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thermo_style custom step spcpu temp press etotal pe ke ecoul elong evdwl
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thermo_modify line one
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run 100000
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write_data data.after_equilibration
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compute RDF_1_1 all rdf 50 1 1 cutoff 3.0
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compute RDF_1_2 all rdf 50 1 2 cutoff 3.0
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compute RDF_1_3 all rdf 50 1 3 cutoff 3.0
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compute RDF_2_2 all rdf 50 2 2 cutoff 3.0
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compute RDF_2_3 all rdf 50 2 3 cutoff 3.0
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compute RDF_3_3 all rdf 50 3 3 cutoff 3.0
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fix 11 all ave/time 50 1 50 c_RDF_1_1[*] file tmp_1_1.rdf mode vector
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fix 12 all ave/time 50 1 50 c_RDF_1_2[*] file tmp_1_2.rdf mode vector
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fix 13 all ave/time 50 1 50 c_RDF_1_3[*] file tmp_1_3.rdf mode vector
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fix 14 all ave/time 50 1 50 c_RDF_2_2[*] file tmp_2_2.rdf mode vector
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fix 15 all ave/time 50 1 50 c_RDF_2_3[*] file tmp_2_3.rdf mode vector
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fix 16 all ave/time 50 1 50 c_RDF_3_3[*] file tmp_3_3.rdf mode vector
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run 10000
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write_data data.after_production_run
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