Create in.slater

This commit is contained in:
Evangelos Voyiatzis 2020-02-27 16:01:38 +01:00 committed by GitHub
parent de9691a751
commit 7849de15b0
No known key found for this signature in database
GPG Key ID: 4AEE18F83AFDEB23
1 changed files with 60 additions and 0 deletions

View File

@ -0,0 +1,60 @@
# Bulk polyelectrolyte as described in section IV of J. Chem. Phys. 125, 224107 (2006)
boundary p p p
units lj
atom_style charge
region my_sim_box block 0.0 10.0 0.0 10.0 0.0 10.0
create_box 3 my_sim_box
create_atoms 1 random 2804 100 my_sim_box
create_atoms 2 random 98 200 my_sim_box
create_atoms 3 random 98 300 my_sim_box
set type 2 charge -1.0
set type 3 charge 1.0
comm_modify mode single vel yes
mass 1 1.0
mass 2 1.0
mass 3 1.0
pair_style hybrid/overlay dpd 1.0 1.0 245455 coul/slater/long 0.929 3.0
pair_coeff * * dpd 25.0 4.5
pair_coeff * * coul/slater/long
kspace_style ewald 0.00001
dielectric 1.0
neighbor 2.0 bin
neigh_modify every 1 delay 0 check no once no
timestep 0.02
fix 2 all nve
thermo 10
thermo_style custom step spcpu temp press etotal pe ke ecoul elong evdwl
thermo_modify line one
run 100000
write_data data.after_equilibration
compute RDF_1_1 all rdf 50 1 1 cutoff 3.0
compute RDF_1_2 all rdf 50 1 2 cutoff 3.0
compute RDF_1_3 all rdf 50 1 3 cutoff 3.0
compute RDF_2_2 all rdf 50 2 2 cutoff 3.0
compute RDF_2_3 all rdf 50 2 3 cutoff 3.0
compute RDF_3_3 all rdf 50 3 3 cutoff 3.0
fix 11 all ave/time 50 1 50 c_RDF_1_1[*] file tmp_1_1.rdf mode vector
fix 12 all ave/time 50 1 50 c_RDF_1_2[*] file tmp_1_2.rdf mode vector
fix 13 all ave/time 50 1 50 c_RDF_1_3[*] file tmp_1_3.rdf mode vector
fix 14 all ave/time 50 1 50 c_RDF_2_2[*] file tmp_2_2.rdf mode vector
fix 15 all ave/time 50 1 50 c_RDF_2_3[*] file tmp_2_3.rdf mode vector
fix 16 all ave/time 50 1 50 c_RDF_3_3[*] file tmp_3_3.rdf mode vector
run 10000
write_data data.after_production_run