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correct spelling issues

This commit is contained in:
Axel Kohlmeyer 2020-01-14 13:34:19 -05:00
parent 660264855a
commit 75b2066506
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2 changed files with 5 additions and 4 deletions
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8
doc/src/fix_hyper_local.rst
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@ -318,7 +318,7 @@ Here is additional information on the optional keywords for this fix.
The *bound* keyword turns on min/max bounds for bias coefficients Cij
for all bonds. Cij is a prefactor for each bond on the bias potential
of maximum strength Vmax. Depending on the choice of *alpha* and
*Btarget* and *Vmax*\ , the booststatting can cause individual Cij
*Btarget* and *Vmax*\ , the boostostatting can cause individual Cij
values to fluctuate. If the fluctuations are too large Cij\*Vmax can
exceed low barrier heights and induce bad event dynamics. Bounding
the Cij values is a way to prevent this. If *Bfrac* is set to -1 or
@ -342,7 +342,7 @@ A setting for *Rfreq* of -1 (the default) means *Vmax* never changes.
A setting of 0 means *Vmax* is adjusted every time an event occurs and
bond pairs are recalculated. A setting of N > 0 timesteps means
*Vmax* is adjusted on the first time an event occurs on a timestep >=
N steps after the previous adjustment. The adjustement to *Vmax* is
N steps after the previous adjustment. The adjustment to *Vmax* is
computed as follows. The current average of all Cij\*Vmax values is
computed and the *Vmax* is reset to that value. All Cij values are
changed to new prefactors such the new Cij\*Vmax is the same as it was
@ -430,7 +430,7 @@ defined).
For value 10, each bond instantaneous boost factor is given by the
equation for Bij above. The total system boost (average across all
bonds) fluctuates, but should average to a value close to the
speficied Btarget.
specified Btarget.
For value 12, the numerator is a count of all biased bonds on each
timestep whose bias energy = 0.0 due to Eij >= *qfactor*\ . The
@ -550,7 +550,7 @@ Related commands
Default
"""""""
The default settings for optinal keywords are bounds = -1 and reset =
The default settings for optimal keywords are bounds = -1 and reset =
-1. The check/ghost and check/bias keywords are not enabled by
default.

1
doc/utils/sphinx-config/false_positives.txt
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@ -214,6 +214,7 @@ Bertotti
Bessarab
Beutler
Bext
Bfrac
bgq
Bh
Biersack