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@ -140,8 +140,8 @@ on how to build LAMMPS with both kinds of auxiliary libraries.
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<TR ALIGN="center"><TD >USER-QTB</TD><TD > quantum nuclear effects</TD><TD > Yuan Shen (Stanford)</TD><TD > <A HREF = "fix_qtb.html">fix qtb</A> <A HREF = "fix_qbmsst.html">fix_qbmsst</A></TD><TD > qtb</TD><TD > -</TD><TD > -</TD></TR>
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<TR ALIGN="center"><TD >USER-QUIP</TD><TD > QUIP/libatoms interface</TD><TD > Albert Bartok-Partay (U Cambridge)</TD><TD > <A HREF = "pair_quip.html">pair_style quip</A></TD><TD > USER/quip</TD><TD > -</TD><TD > lib/quip</TD></TR>
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<TR ALIGN="center"><TD >USER-REAXC</TD><TD > C version of ReaxFF</TD><TD > Metin Aktulga (LBNL)</TD><TD > <A HREF = "pair_reax_c.html">pair_style reaxc</A></TD><TD > reax</TD><TD > -</TD><TD > -</TD></TR>
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<TR ALIGN="center"><TD >USER-SMD</TD><TD > smoothed Mach dynamics</TD><TD > Georg Ganzenmuller (EMI)</TD><TD > <A HREF = "USER/smd/SMD_user_guide.pdf">userguide.pdf</A></TD><TD > USER/smd</TD><TD > -</TD><TD > -</TD></TR>
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<TR ALIGN="center"><TD >USER-SPH</TD><TD > smoothed particle hydrodynamics</TD><TD > Georg Ganzenmuller (EMI)</TD><TD > <A HREF = "USER/sph/SPH_LAMMPS_userguide.pdf">userguide.pdf</A></TD><TD > USER/sph</TD><TD > <A HREF = "http://lammps.sandia.gov/movies.html#sph">sph</A></TD><TD > -</TD></TR>
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<TR ALIGN="center"><TD >USER-SMD</TD><TD > smoothed Mach dynamics</TD><TD > Georg Ganzenmuller (EMI)</TD><TD > <A HREF = "PDF/SMD_LAMMPS_userguide.pdf">userguide.pdf</A></TD><TD > USER/smd</TD><TD > -</TD><TD > -</TD></TR>
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<TR ALIGN="center"><TD >USER-SPH</TD><TD > smoothed particle hydrodynamics</TD><TD > Georg Ganzenmuller (EMI)</TD><TD > <A HREF = "PDF/SPH_LAMMPS_userguide.pdf">userguide.pdf</A></TD><TD > USER/sph</TD><TD > <A HREF = "http://lammps.sandia.gov/movies.html#sph">sph</A></TD><TD > -</TD></TR>
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<TR ALIGN="center"><TD >
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</TD></TR></TABLE></DIV>
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@ -660,7 +660,7 @@ LAMMPS. Currently, the package has the following features:
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<P>* Rigid boundary conditions (walls) can be loaded as surface geometries
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from *.STL files.
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</P>
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<P>See the file doc/USER/smd/SMD_user_guide.pdf to get started.
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<P>See the file doc/PDF/SMD_LAMMPS_userguide.pdf to get started.
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</P>
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<P>There are example scripts for using this package in examples/USER/smd.
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</P>
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@ -687,7 +687,7 @@ LAMMPS. Currently, the package has the following features:
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<P>* Output commands to access internal energy and density for dumping and
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thermo output
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</P>
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<P>See the file doc/USER/sph/SPH_LAMMPS_userguide.pdf to get started.
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<P>See the file doc/PDF/SPH_LAMMPS_userguide.pdf to get started.
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</P>
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<P>There are example scripts for using this package in examples/USER/sph.
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</P>
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@ -788,7 +788,8 @@ Examples are the USER-ATC and MEAM packages.
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<P>A few of the lib sub-directories do not include code, but do include
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instructions and sometimes scripts that automate the process of
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downloading the auxiliary library and installing it so LAMMPS can link
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to it. Examples are the KIM and VORONOI and USER-MOLFILE packages.
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to it. Examples are the KIM and VORONOI and USER-MOLFILE and USER-SMD
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packages.
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</P>
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<P>The lib/python directory (for the PYTHON package) contains only a
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choice of Makefile.lammps.* files. This is because no auxiliary code
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@ -833,11 +834,11 @@ libraries needed to use the USER-ATC or USER-AWPMD packages.
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</P>
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<P>For libraries without provided code, the sub-directory README file has
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information on where to download the library and how to build it,
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e.g. lib/voronoi/README. The README files also describe how you must
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either (a) create soft links, via the "ln" command, in those
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directories to point to where you built or installed the packages,
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or (b) check or edit the Makefile.lammps file in the same directory
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to provide that information.
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e.g. lib/voronoi/README and lib/smd/README. The README files also
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describe how you must either (a) create soft links, via the "ln"
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command, in those directories to point to where you built or installed
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the packages, or (b) check or edit the Makefile.lammps file in the
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same directory to provide that information.
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</P>
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<P>Some of the sub-directories, e.g. lib/voronoi, also have an install.py
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script which can be used to automate the process of
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