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update AtomEye related URLs

This commit is contained in:
Axel Kohlmeyer 2020-03-12 00:08:57 -04:00
parent d0f57289fc
commit 667c9f2a9f
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6 changed files with 10 additions and 10 deletions
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2
doc/src/Howto_viz.rst
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@ -29,4 +29,4 @@ snapshots.
.. _ensight: http://www.ensight.com
.. _atomeye: http://mt.seas.upenn.edu/Archive/Graphics/A
.. _atomeye: http://li.mit.edu/Archive/Graphics/A/

8
doc/src/Python_examples.rst
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@ -44,12 +44,12 @@ AtomEye WWW pages `here <atomeye_>`_ or `here <atomeye3_>`_ for more details:
.. parsed-literal::
http://mt.seas.upenn.edu/Archive/Graphics/A
http://mt.seas.upenn.edu/Archive/Graphics/A3/A3.html
http://li.mit.edu/Archive/Graphics/A/
http://li.mit.edu/Archive/Graphics/A3/A3.html
.. _atomeye: http://mt.seas.upenn.edu/Archive/Graphics/A
.. _atomeye: http://li.mit.edu/Archive/Graphics/A/
.. _atomeye3: http://mt.seas.upenn.edu/Archive/Graphics/A3/A3.html
.. _atomeye3: http://li.mit.edu/Archive/Graphics/A3/A3.html
The latter link is to AtomEye 3 which has the scripting
capability needed by these Python scripts.

4
doc/src/Tools.rst
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@ -387,7 +387,7 @@ lmp2cfg tool
The lmp2cfg sub-directory contains a tool for converting LAMMPS output
files into a series of \*.cfg files which can be read into the
`AtomEye <http://mt.seas.upenn.edu/Archive/Graphics/A>`_ visualizer. See
`AtomEye <http://li.mit.edu/Archive/Graphics/A/>`_ visualizer. See
the README file for more information.
This tool was written by Ara Kooser at Sandia (askoose at sandia.gov).
@ -403,7 +403,7 @@ The matlab sub-directory contains several `MATLAB <matlabhome_>`_ scripts for
post-processing LAMMPS output. The scripts include readers for log
and dump files, a reader for EAM potential files, and a converter that
reads LAMMPS dump files and produces CFG files that can be visualized
with the `AtomEye <http://mt.seas.upenn.edu/Archive/Graphics/A>`_
with the `AtomEye <http://li.mit.edu/Archive/Graphics/A/>`_
visualizer.
See the README.pdf file for more information.

2
doc/src/dump.rst
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@ -305,7 +305,7 @@ be cut and pasted directly into a data file read by the
Style *cfg* has the same command syntax as style *custom* and writes
extended CFG format files, as used by the
`AtomEye <http://mt.seas.upenn.edu/Archive/Graphics/A>`_ visualization
`AtomEye <http://li.mit.edu/Archive/Graphics/A/>`_ visualization
package. Since the extended CFG format uses a single snapshot of the
system per file, a wildcard "\*" must be included in the filename, as
discussed below. The list of atom attributes for style *cfg* must

2
doc/src/dump_image.rst
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@ -223,7 +223,7 @@ every atom type is C (carbon). Every element has a color and diameter
associated with it, which is the same as the colors and sizes used by
the `AtomEye <atomeye_>`_ visualization package.
.. _atomeye: http://mt.seas.upenn.edu/Archive/Graphics/A
.. _atomeye: http://li.mit.edu/Archive/Graphics/A/
If other atom attributes are used for the *color* or *diameter*
settings, they are interpreted in the following way.

2
doc/src/dump_modify.rst
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@ -213,7 +213,7 @@ In the case of *xyz* format dumps, there are no restrictions to what
label can be used as an element name. Any white-space separated text
will be accepted.
.. _atomeye: http://mt.seas.upenn.edu/Archive/Graphics/A
.. _atomeye: http://li.mit.edu/Archive/Graphics/A/
----------