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git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@7849 f3b2605a-c512-4ea7-a41b-209d697bcdaa

This commit is contained in:
sjplimp 2012-02-28 17:19:20 +00:00
parent b2e7c4970f
commit 52568d2738
35 changed files with 32 additions and 36 deletions
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1
src/MAKE/Makefile.glory
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@ -1,7 +1,6 @@
# glory = Linux cluster with 4-way quad cores, Intel mpicxx, native MPI, FFTW # glory = Linux cluster with 4-way quad cores, Intel mpicxx, native MPI, FFTW
SHELL = /bin/sh SHELL = /bin/sh
.IGNORE:
# this Makefile builds LAMMPS for mvapich running on Glory # this Makefile builds LAMMPS for mvapich running on Glory
# to invoke this Makefile, you need these modules loaded: # to invoke this Makefile, you need these modules loaded:

1
src/MAKE/Makefile.redsky
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@ -1,7 +1,6 @@
# redsky - SUN X6275 with dual socket/quad core nodes, mpic++, openmpi, FFTW # redsky - SUN X6275 with dual socket/quad core nodes, mpic++, openmpi, FFTW
SHELL = /bin/sh SHELL = /bin/sh
.IGNORE:
# this Makefile builds LAMMPS for RedSky with OpenMPI # this Makefile builds LAMMPS for RedSky with OpenMPI
# to invoke this Makefile, you need these modules loaded: # to invoke this Makefile, you need these modules loaded:

1
src/MAKE/Makefile.tunnison
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@ -1,7 +1,6 @@
# tunnison - 64-bit dual-core Linux cluster, mpic++, OpenMPI-1.1, FFTW2 # tunnison - 64-bit dual-core Linux cluster, mpic++, OpenMPI-1.1, FFTW2
SHELL = /bin/sh SHELL = /bin/sh
.IGNORE:
# this Makefile builds LAMMPS for Tunnison with OpenMPI # this Makefile builds LAMMPS for Tunnison with OpenMPI
# to invoke this Makefile, you need these modules loaded: # to invoke this Makefile, you need these modules loaded:

2
src/atom_vec_atomic.cpp
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@ -11,7 +11,7 @@
See the README file in the top-level LAMMPS directory. See the README file in the top-level LAMMPS directory.
------------------------------------------------------------------------- */ ------------------------------------------------------------------------- */
#include "lmptype.h" //#include "lmptype.h"
#include "stdlib.h" #include "stdlib.h"
#include "atom_vec_atomic.h" #include "atom_vec_atomic.h"
#include "atom.h" #include "atom.h"

2
src/atom_vec_charge.cpp
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@ -11,7 +11,7 @@
See the README file in the top-level LAMMPS directory. See the README file in the top-level LAMMPS directory.
------------------------------------------------------------------------- */ ------------------------------------------------------------------------- */
#include "lmptype.h" //#include "lmptype.h"
#include "stdlib.h" #include "stdlib.h"
#include "atom_vec_charge.h" #include "atom_vec_charge.h"
#include "atom.h" #include "atom.h"

2
src/atom_vec_ellipsoid.cpp
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@ -15,7 +15,7 @@
Contributing author: Mike Brown (SNL) Contributing author: Mike Brown (SNL)
------------------------------------------------------------------------- */ ------------------------------------------------------------------------- */
#include "lmptype.h" //#include "lmptype.h"
#include "stdlib.h" #include "stdlib.h"
#include "atom_vec_ellipsoid.h" #include "atom_vec_ellipsoid.h"
#include "math_extra.h" #include "math_extra.h"

2
src/atom_vec_hybrid.cpp
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@ -11,7 +11,7 @@
See the README file in the top-level LAMMPS directory. See the README file in the top-level LAMMPS directory.
------------------------------------------------------------------------- */ ------------------------------------------------------------------------- */
#include "lmptype.h" //#include "lmptype.h"
#include "stdlib.h" #include "stdlib.h"
#include "string.h" #include "string.h"
#include "atom_vec_hybrid.h" #include "atom_vec_hybrid.h"

2
src/atom_vec_line.cpp
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@ -11,7 +11,7 @@
See the README file in the top-level LAMMPS directory. See the README file in the top-level LAMMPS directory.
------------------------------------------------------------------------- */ ------------------------------------------------------------------------- */
#include "lmptype.h" //#include "lmptype.h"
#include "math.h" #include "math.h"
#include "stdlib.h" #include "stdlib.h"
#include "string.h" #include "string.h"

2
src/atom_vec_sphere.cpp
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@ -11,7 +11,7 @@
See the README file in the top-level LAMMPS directory. See the README file in the top-level LAMMPS directory.
------------------------------------------------------------------------- */ ------------------------------------------------------------------------- */
#include "lmptype.h" //#include "lmptype.h"
#include "math.h" #include "math.h"
#include "stdlib.h" #include "stdlib.h"
#include "string.h" #include "string.h"

2
src/atom_vec_tri.cpp
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@ -11,7 +11,7 @@
See the README file in the top-level LAMMPS directory. See the README file in the top-level LAMMPS directory.
------------------------------------------------------------------------- */ ------------------------------------------------------------------------- */
#include "lmptype.h" //#include "lmptype.h"
#include "math.h" #include "math.h"
#include "stdlib.h" #include "stdlib.h"
#include "string.h" #include "string.h"

2
src/balance.cpp
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@ -11,8 +11,8 @@
See the README file in the top-level LAMMPS directory. See the README file in the top-level LAMMPS directory.
------------------------------------------------------------------------- */ ------------------------------------------------------------------------- */
#include "mpi.h"
#include "lmptype.h" #include "lmptype.h"
#include "mpi.h"
#include "math.h" #include "math.h"
#include "stdlib.h" #include "stdlib.h"
#include "string.h" #include "string.h"

2
src/comm.cpp
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@ -15,7 +15,7 @@
Contributing author (triclinic) : Pieter in 't Veld (SNL) Contributing author (triclinic) : Pieter in 't Veld (SNL)
------------------------------------------------------------------------- */ ------------------------------------------------------------------------- */
#include "lmptype.h" //#include "lmptype.h"
#include "mpi.h" #include "mpi.h"
#include "math.h" #include "math.h"
#include "string.h" #include "string.h"

2
src/compute.cpp
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@ -11,7 +11,7 @@
See the README file in the top-level LAMMPS directory. See the README file in the top-level LAMMPS directory.
------------------------------------------------------------------------- */ ------------------------------------------------------------------------- */
#include "lmptype.h" //#include "lmptype.h"
#include "mpi.h" #include "mpi.h"
#include "stdlib.h" #include "stdlib.h"
#include "string.h" #include "string.h"

2
src/compute_reduce.cpp
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@ -11,7 +11,7 @@
See the README file in the top-level LAMMPS directory. See the README file in the top-level LAMMPS directory.
------------------------------------------------------------------------- */ ------------------------------------------------------------------------- */
#include "lmptype.h" //#include "lmptype.h"
#include "string.h" #include "string.h"
#include "stdlib.h" #include "stdlib.h"
#include "compute_reduce.h" #include "compute_reduce.h"

2
src/create_atoms.cpp
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@ -11,7 +11,7 @@
See the README file in the top-level LAMMPS directory. See the README file in the top-level LAMMPS directory.
------------------------------------------------------------------------- */ ------------------------------------------------------------------------- */
#include "lmptype.h" //#include "lmptype.h"
#include "math.h" #include "math.h"
#include "stdlib.h" #include "stdlib.h"
#include "string.h" #include "string.h"

2
src/delete_atoms.cpp
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@ -11,7 +11,7 @@
See the README file in the top-level LAMMPS directory. See the README file in the top-level LAMMPS directory.
------------------------------------------------------------------------- */ ------------------------------------------------------------------------- */
#include "lmptype.h" //#include "lmptype.h"
#include "stdlib.h" #include "stdlib.h"
#include "string.h" #include "string.h"
#include "delete_atoms.h" #include "delete_atoms.h"

2
src/dump_dcd.cpp
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@ -16,7 +16,7 @@
Axel Kohlmeyer (Temple U), support for groups Axel Kohlmeyer (Temple U), support for groups
------------------------------------------------------------------------- */ ------------------------------------------------------------------------- */
#include "lmptype.h" //#include "lmptype.h"
#include "math.h" #include "math.h"
#include "inttypes.h" #include "inttypes.h"
#include "stdio.h" #include "stdio.h"

2
src/fix_ave_atom.cpp
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@ -11,7 +11,7 @@
See the README file in the top-level LAMMPS directory. See the README file in the top-level LAMMPS directory.
------------------------------------------------------------------------- */ ------------------------------------------------------------------------- */
#include "lmptype.h" //#include "lmptype.h"
#include "stdlib.h" #include "stdlib.h"
#include "string.h" #include "string.h"
#include "fix_ave_atom.h" #include "fix_ave_atom.h"

2
src/fix_ave_correlate.cpp
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@ -17,7 +17,7 @@
Reese Jones (Sandia) Reese Jones (Sandia)
------------------------------------------------------------------------- */ ------------------------------------------------------------------------- */
#include "lmptype.h" //#include "lmptype.h"
#include "stdlib.h" #include "stdlib.h"
#include "string.h" #include "string.h"
#include "fix_ave_correlate.h" #include "fix_ave_correlate.h"

2
src/fix_ave_histo.cpp
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@ -11,7 +11,7 @@
See the README file in the top-level LAMMPS directory. See the README file in the top-level LAMMPS directory.
------------------------------------------------------------------------- */ ------------------------------------------------------------------------- */
#include "lmptype.h" //#include "lmptype.h"
#include "stdlib.h" #include "stdlib.h"
#include "string.h" #include "string.h"
#include "fix_ave_histo.h" #include "fix_ave_histo.h"

2
src/fix_ave_spatial.cpp
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@ -15,7 +15,7 @@
Contributing author: Pieter in 't Veld (SNL) Contributing author: Pieter in 't Veld (SNL)
------------------------------------------------------------------------- */ ------------------------------------------------------------------------- */
#include "lmptype.h" //#include "lmptype.h"
#include "stdlib.h" #include "stdlib.h"
#include "string.h" #include "string.h"
#include "fix_ave_spatial.h" #include "fix_ave_spatial.h"

2
src/fix_ave_time.cpp
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@ -15,7 +15,7 @@
Contributing author: Pieter in 't Veld (SNL) Contributing author: Pieter in 't Veld (SNL)
------------------------------------------------------------------------- */ ------------------------------------------------------------------------- */
#include "lmptype.h" //#include "lmptype.h"
#include "stdlib.h" #include "stdlib.h"
#include "string.h" #include "string.h"
#include "fix_ave_time.h" #include "fix_ave_time.h"

2
src/force.cpp
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@ -11,7 +11,7 @@
See the README file in the top-level LAMMPS directory. See the README file in the top-level LAMMPS directory.
------------------------------------------------------------------------- */ ------------------------------------------------------------------------- */
#include "lmptype.h" //#include "lmptype.h"
#include "stdlib.h" #include "stdlib.h"
#include "string.h" #include "string.h"
#include "ctype.h" #include "ctype.h"

3
src/group.cpp
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@ -11,9 +11,8 @@
See the README file in the top-level LAMMPS directory. See the README file in the top-level LAMMPS directory.
------------------------------------------------------------------------- */ ------------------------------------------------------------------------- */
#include "lmptype.h"
#include "math.h"
#include "mpi.h" #include "mpi.h"
#include "math.h"
#include "stdio.h" #include "stdio.h"
#include "string.h" #include "string.h"
#include "stdlib.h" #include "stdlib.h"

2
src/integrate.cpp
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@ -11,7 +11,7 @@
See the README file in the top-level LAMMPS directory. See the README file in the top-level LAMMPS directory.
------------------------------------------------------------------------- */ ------------------------------------------------------------------------- */
#include "lmptype.h" //#include "lmptype.h"
#include "stdlib.h" #include "stdlib.h"
#include "integrate.h" #include "integrate.h"
#include "update.h" #include "update.h"

2
src/memory.cpp
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@ -11,7 +11,7 @@
See the README file in the top-level LAMMPS directory. See the README file in the top-level LAMMPS directory.
------------------------------------------------------------------------- */ ------------------------------------------------------------------------- */
#include "lmptype.h" //#include "lmptype.h"
#include "stdio.h" #include "stdio.h"
#include "stdlib.h" #include "stdlib.h"
#include "string.h" #include "string.h"

2
src/min.cpp
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@ -19,7 +19,7 @@
JR Shewchuk, http://www-2.cs.cmu.edu/~jrs/jrspapers.html#cg JR Shewchuk, http://www-2.cs.cmu.edu/~jrs/jrspapers.html#cg
------------------------------------------------------------------------- */ ------------------------------------------------------------------------- */
#include "lmptype.h" //#include "lmptype.h"
#include "math.h" #include "math.h"
#include "stdlib.h" #include "stdlib.h"
#include "string.h" #include "string.h"

2
src/minimize.cpp
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@ -11,7 +11,7 @@
See the README file in the top-level LAMMPS directory. See the README file in the top-level LAMMPS directory.
------------------------------------------------------------------------- */ ------------------------------------------------------------------------- */
#include "lmptype.h" //#include "lmptype.h"
#include "stdlib.h" #include "stdlib.h"
#include "minimize.h" #include "minimize.h"
#include "domain.h" #include "domain.h"

2
src/modify.cpp
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@ -11,7 +11,7 @@
See the README file in the top-level LAMMPS directory. See the README file in the top-level LAMMPS directory.
------------------------------------------------------------------------- */ ------------------------------------------------------------------------- */
#include "lmptype.h" //#include "lmptype.h"
#include "stdio.h" #include "stdio.h"
#include "string.h" #include "string.h"
#include "modify.h" #include "modify.h"

2
src/neigh_bond.cpp
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@ -11,7 +11,7 @@
See the README file in the top-level LAMMPS directory. See the README file in the top-level LAMMPS directory.
------------------------------------------------------------------------- */ ------------------------------------------------------------------------- */
#include "lmptype.h" //#include "lmptype.h"
#include "neighbor.h" #include "neighbor.h"
#include "atom.h" #include "atom.h"
#include "force.h" #include "force.h"

2
src/neigh_list.cpp
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@ -11,7 +11,7 @@
See the README file in the top-level LAMMPS directory. See the README file in the top-level LAMMPS directory.
------------------------------------------------------------------------- */ ------------------------------------------------------------------------- */
#include "lmptype.h" //#include "lmptype.h"
#include "neigh_list.h" #include "neigh_list.h"
#include "atom.h" #include "atom.h"
#include "comm.h" #include "comm.h"

2
src/read_data.cpp
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@ -12,8 +12,8 @@
------------------------------------------------------------------------- */ ------------------------------------------------------------------------- */
#include "lmptype.h" #include "lmptype.h"
#include "math.h"
#include "mpi.h" #include "mpi.h"
#include "math.h"
#include "string.h" #include "string.h"
#include "stdlib.h" #include "stdlib.h"
#include "ctype.h" #include "ctype.h"

2
src/replicate.cpp
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@ -11,7 +11,7 @@
See the README file in the top-level LAMMPS directory. See the README file in the top-level LAMMPS directory.
------------------------------------------------------------------------- */ ------------------------------------------------------------------------- */
#include "lmptype.h" //#include "lmptype.h"
#include "stdlib.h" #include "stdlib.h"
#include "string.h" #include "string.h"
#include "replicate.h" #include "replicate.h"

2
src/run.cpp
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@ -11,7 +11,7 @@
See the README file in the top-level LAMMPS directory. See the README file in the top-level LAMMPS directory.
------------------------------------------------------------------------- */ ------------------------------------------------------------------------- */
#include "lmptype.h" //#include "lmptype.h"
#include "stdlib.h" #include "stdlib.h"
#include "string.h" #include "string.h"
#include "run.h" #include "run.h"

2
src/update.cpp
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@ -11,7 +11,7 @@
See the README file in the top-level LAMMPS directory. See the README file in the top-level LAMMPS directory.
------------------------------------------------------------------------- */ ------------------------------------------------------------------------- */
#include "lmptype.h" //#include "lmptype.h"
#include "string.h" #include "string.h"
#include "stdlib.h" #include "stdlib.h"
#include "update.h" #include "update.h"