forked from lijiext/lammps
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9271 f3b2605a-c512-4ea7-a41b-209d697bcdaa
This commit is contained in:
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4c71fc2311
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4f2bdac177
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@ -35,7 +35,12 @@ ComputeERotateAsphere(LAMMPS *lmp, int narg, char **arg) :
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scalar_flag = 1;
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scalar_flag = 1;
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extscalar = 1;
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extscalar = 1;
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}
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/* ---------------------------------------------------------------------- */
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void ComputeERotateAsphere::init()
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{
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// error check
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// error check
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avec_ellipsoid = (AtomVecEllipsoid *) atom->style_match("ellipsoid");
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avec_ellipsoid = (AtomVecEllipsoid *) atom->style_match("ellipsoid");
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@ -44,12 +49,7 @@ ComputeERotateAsphere(LAMMPS *lmp, int narg, char **arg) :
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if (!avec_ellipsoid && !avec_line && !avec_tri)
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if (!avec_ellipsoid && !avec_line && !avec_tri)
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error->all(FLERR,"Compute erotate/asphere requires "
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error->all(FLERR,"Compute erotate/asphere requires "
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"atom style ellipsoid or line or tri");
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"atom style ellipsoid or line or tri");
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}
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/* ---------------------------------------------------------------------- */
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void ComputeERotateAsphere::init()
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{
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// check that all particles are finite-size
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// check that all particles are finite-size
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// no point particles allowed, spherical is OK
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// no point particles allowed, spherical is OK
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@ -73,11 +73,6 @@ ComputeTempAsphere::ComputeTempAsphere(LAMMPS *lmp, int narg, char **arg) :
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vector = new double[6];
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vector = new double[6];
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// error check
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avec = (AtomVecEllipsoid *) atom->style_match("ellipsoid");
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if (!avec)
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error->all(FLERR,"Compute temp/asphere requires atom style ellipsoid");
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}
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}
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/* ---------------------------------------------------------------------- */
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/* ---------------------------------------------------------------------- */
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@ -92,6 +87,12 @@ ComputeTempAsphere::~ComputeTempAsphere()
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void ComputeTempAsphere::init()
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void ComputeTempAsphere::init()
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{
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{
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// error check
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avec = (AtomVecEllipsoid *) atom->style_match("ellipsoid");
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if (!avec)
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error->all(FLERR,"Compute temp/asphere requires atom style ellipsoid");
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// check that all particles are finite-size, no point particles allowed
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// check that all particles are finite-size, no point particles allowed
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int *ellipsoid = atom->ellipsoid;
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int *ellipsoid = atom->ellipsoid;
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@ -34,15 +34,16 @@ using namespace FixConst;
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FixNHAsphere::FixNHAsphere(LAMMPS *lmp, int narg, char **arg) :
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FixNHAsphere::FixNHAsphere(LAMMPS *lmp, int narg, char **arg) :
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FixNH(lmp, narg, arg)
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FixNH(lmp, narg, arg)
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{
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{
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avec = (AtomVecEllipsoid *) atom->style_match("ellipsoid");
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if (!avec)
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error->all(FLERR,"Compute nvt/nph/npt asphere requires atom style ellipsoid");
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}
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}
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/* ---------------------------------------------------------------------- */
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/* ---------------------------------------------------------------------- */
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void FixNHAsphere::init()
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void FixNHAsphere::init()
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{
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{
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avec = (AtomVecEllipsoid *) atom->style_match("ellipsoid");
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if (!avec)
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error->all(FLERR,"Compute nvt/nph/npt asphere requires atom style ellipsoid");
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// check that all particles are finite-size
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// check that all particles are finite-size
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// no point particles allowed, spherical is OK
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// no point particles allowed, spherical is OK
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@ -37,15 +37,16 @@ using namespace FixConst;
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FixNVEAsphere::FixNVEAsphere(LAMMPS *lmp, int narg, char **arg) :
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FixNVEAsphere::FixNVEAsphere(LAMMPS *lmp, int narg, char **arg) :
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FixNVE(lmp, narg, arg)
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FixNVE(lmp, narg, arg)
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{
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{
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avec = (AtomVecEllipsoid *) atom->style_match("ellipsoid");
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if (!avec)
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error->all(FLERR,"Compute nve/asphere requires atom style ellipsoid");
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}
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}
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/* ---------------------------------------------------------------------- */
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/* ---------------------------------------------------------------------- */
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void FixNVEAsphere::init()
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void FixNVEAsphere::init()
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{
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{
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avec = (AtomVecEllipsoid *) atom->style_match("ellipsoid");
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if (!avec)
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error->all(FLERR,"Compute nve/asphere requires atom style ellipsoid");
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// check that all particles are finite-size ellipsoids
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// check that all particles are finite-size ellipsoids
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// no point particles allowed, spherical is OK
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// no point particles allowed, spherical is OK
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@ -34,18 +34,18 @@ FixNVEAsphereNoforce::FixNVEAsphereNoforce(LAMMPS *lmp, int narg, char **arg) :
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if (narg != 3) error->all(FLERR,"Illegal fix nve/asphere/noforce command");
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if (narg != 3) error->all(FLERR,"Illegal fix nve/asphere/noforce command");
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time_integrate = 1;
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time_integrate = 1;
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// error check
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avec = (AtomVecEllipsoid *) atom->style_match("ellipsoid");
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if (!atom->ellipsoid_flag)
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error->all(FLERR,"Fix nve/asphere/noforce requires atom style ellipsoid");
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}
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}
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/* ---------------------------------------------------------------------- */
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/* ---------------------------------------------------------------------- */
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void FixNVEAsphereNoforce::init()
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void FixNVEAsphereNoforce::init()
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{
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{
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// error check
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avec = (AtomVecEllipsoid *) atom->style_match("ellipsoid");
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if (!atom->ellipsoid_flag)
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error->all(FLERR,"Fix nve/asphere/noforce requires atom style ellipsoid");
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FixNVENoforce::init();
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FixNVENoforce::init();
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dtq = 0.5 * dtv;
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dtq = 0.5 * dtv;
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@ -38,11 +38,6 @@ FixNVELine::FixNVELine(LAMMPS *lmp, int narg, char **arg) :
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MINUSPI = -MY_PI;
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MINUSPI = -MY_PI;
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TWOPI = 2.0*MY_PI;
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TWOPI = 2.0*MY_PI;
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// error checks
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avec = (AtomVecLine *) atom->style_match("line");
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if (!avec) error->all(FLERR,"Fix nve/line requires atom style line");
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}
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}
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/* ---------------------------------------------------------------------- */
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/* ---------------------------------------------------------------------- */
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@ -63,6 +58,11 @@ void FixNVELine::init()
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{
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{
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int i,itype;
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int i,itype;
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// error checks
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avec = (AtomVecLine *) atom->style_match("line");
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if (!avec) error->all(FLERR,"Fix nve/line requires atom style line");
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if (domain->dimension != 2)
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if (domain->dimension != 2)
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error->all(FLERR,"Fix nve/line can only be used for 2d simulations");
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error->all(FLERR,"Fix nve/line can only be used for 2d simulations");
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@ -32,11 +32,6 @@ FixNVETri::FixNVETri(LAMMPS *lmp, int narg, char **arg) :
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if (narg != 3) error->all(FLERR,"Illegal fix nve/tri command");
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if (narg != 3) error->all(FLERR,"Illegal fix nve/tri command");
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time_integrate = 1;
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time_integrate = 1;
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// error checks
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avec = (AtomVecTri *) atom->style_match("tri");
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if (!avec) error->all(FLERR,"Fix nve/tri requires atom style tri");
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}
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}
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/* ---------------------------------------------------------------------- */
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/* ---------------------------------------------------------------------- */
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@ -57,6 +52,11 @@ void FixNVETri::init()
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{
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{
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int i,itype;
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int i,itype;
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// error checks
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avec = (AtomVecTri *) atom->style_match("tri");
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if (!avec) error->all(FLERR,"Fix nve/tri requires atom style tri");
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if (domain->dimension != 3)
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if (domain->dimension != 3)
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error->all(FLERR,"Fix nve/tri can only be used for 3d simulations");
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error->all(FLERR,"Fix nve/tri can only be used for 3d simulations");
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@ -37,9 +37,6 @@ using namespace LAMMPS_NS;
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PairGayBerne::PairGayBerne(LAMMPS *lmp) : Pair(lmp)
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PairGayBerne::PairGayBerne(LAMMPS *lmp) : Pair(lmp)
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{
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{
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avec = (AtomVecEllipsoid *) atom->style_match("ellipsoid");
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if (!avec) error->all(FLERR,"Pair gayberne requires atom style ellipsoid");
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single_enable = 0;
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single_enable = 0;
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}
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}
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@ -335,6 +332,9 @@ void PairGayBerne::coeff(int narg, char **arg)
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void PairGayBerne::init_style()
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void PairGayBerne::init_style()
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{
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{
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avec = (AtomVecEllipsoid *) atom->style_match("ellipsoid");
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if (!avec) error->all(FLERR,"Pair gayberne requires atom style ellipsoid");
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neighbor->request(this);
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neighbor->request(this);
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// per-type shape precalculations
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// per-type shape precalculations
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@ -32,9 +32,6 @@ using namespace LAMMPS_NS;
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PairLineLJ::PairLineLJ(LAMMPS *lmp) : Pair(lmp)
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PairLineLJ::PairLineLJ(LAMMPS *lmp) : Pair(lmp)
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{
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{
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avec = (AtomVecLine *) atom->style_match("line");
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if (!avec) error->all(FLERR,"Pair line/lj requires atom style line");
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dmax = nmax = 0;
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dmax = nmax = 0;
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discrete = NULL;
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discrete = NULL;
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dnum = dfirst = NULL;
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dnum = dfirst = NULL;
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@ -384,6 +381,18 @@ void PairLineLJ::coeff(int narg, char **arg)
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if (count == 0) error->all(FLERR,"Incorrect args for pair coefficients");
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if (count == 0) error->all(FLERR,"Incorrect args for pair coefficients");
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}
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}
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/* ----------------------------------------------------------------------
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init specific to this pair style
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------------------------------------------------------------------------- */
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void PairLineLJ::init_style()
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{
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avec = (AtomVecLine *) atom->style_match("line");
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if (!avec) error->all(FLERR,"Pair line/lj requires atom style line");
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neighbor->request(this);
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}
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/* ----------------------------------------------------------------------
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/* ----------------------------------------------------------------------
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init for one type pair i,j and corresponding j,i
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init for one type pair i,j and corresponding j,i
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------------------------------------------------------------------------- */
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------------------------------------------------------------------------- */
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@ -31,6 +31,7 @@ class PairLineLJ : public Pair {
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virtual void compute(int, int);
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virtual void compute(int, int);
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void settings(int, char **);
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void settings(int, char **);
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void coeff(int, char **);
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void coeff(int, char **);
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virtual void init_style();
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double init_one(int, int);
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double init_one(int, int);
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protected:
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protected:
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@ -39,9 +39,6 @@ PairRESquared::PairRESquared(LAMMPS *lmp) : Pair(lmp),
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b_alpha(45.0/56.0),
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b_alpha(45.0/56.0),
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cr60(pow(60.0,1.0/3.0))
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cr60(pow(60.0,1.0/3.0))
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{
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{
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avec = (AtomVecEllipsoid *) atom->style_match("ellipsoid");
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if (!avec) error->all(FLERR,"Pair resquared requires atom style ellipsoid");
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single_enable = 0;
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single_enable = 0;
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cr60 = pow(60.0,1.0/3.0);
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cr60 = pow(60.0,1.0/3.0);
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@ -321,6 +318,9 @@ void PairRESquared::coeff(int narg, char **arg)
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void PairRESquared::init_style()
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void PairRESquared::init_style()
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{
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{
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avec = (AtomVecEllipsoid *) atom->style_match("ellipsoid");
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if (!avec) error->all(FLERR,"Pair resquared requires atom style ellipsoid");
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neighbor->request(this);
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neighbor->request(this);
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// per-type shape precalculations
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// per-type shape precalculations
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PairTriLJ::PairTriLJ(LAMMPS *lmp) : Pair(lmp)
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PairTriLJ::PairTriLJ(LAMMPS *lmp) : Pair(lmp)
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{
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{
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avec = (AtomVecTri *) atom->style_match("tri");
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if (!avec) error->all(FLERR,"Pair tri/lj requires atom style tri");
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dmax = nmax = 0;
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dmax = nmax = 0;
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discrete = NULL;
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discrete = NULL;
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dnum = dfirst = NULL;
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dnum = dfirst = NULL;
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if (count == 0) error->all(FLERR,"Incorrect args for pair coefficients");
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if (count == 0) error->all(FLERR,"Incorrect args for pair coefficients");
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}
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}
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/* ----------------------------------------------------------------------
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init specific to this pair style
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------------------------------------------------------------------------- */
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void PairTriLJ::init_style()
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{
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avec = (AtomVecTri *) atom->style_match("tri");
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if (!avec) error->all(FLERR,"Pair tri/lj requires atom style tri");
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neighbor->request(this);
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}
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/* ----------------------------------------------------------------------
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/* ----------------------------------------------------------------------
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init for one type pair i,j and corresponding j,i
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init for one type pair i,j and corresponding j,i
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------------------------------------------------------------------------- */
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------------------------------------------------------------------------- */
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@ -31,6 +31,7 @@ class PairTriLJ : public Pair {
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virtual void compute(int, int);
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virtual void compute(int, int);
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void settings(int, char **);
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void settings(int, char **);
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void coeff(int, char **);
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void coeff(int, char **);
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virtual void init_style();
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double init_one(int, int);
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double init_one(int, int);
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protected:
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protected:
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