From 4c3539e9ff225e345c2f7beb227eb9d25cb40af6 Mon Sep 17 00:00:00 2001
From: sjplimp <sjplimp@f3b2605a-c512-4ea7-a41b-209d697bcdaa>
Date: Tue, 22 Jul 2014 14:38:28 +0000
Subject: [PATCH] git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12186
 f3b2605a-c512-4ea7-a41b-209d697bcdaa

---
 doc/molecule.html | 8 +++++++-
 doc/molecule.txt  | 8 +++++++-
 2 files changed, 14 insertions(+), 2 deletions(-)

diff --git a/doc/molecule.html b/doc/molecule.html
index 270a3742d1..46c1cf3469 100644
--- a/doc/molecule.html
+++ b/doc/molecule.html
@@ -29,7 +29,7 @@ molecule CO2 co2.txt
 <P>Define a molecule template that can be used as part of other LAMMPS
 commands, typically to define a collection of particles as a bonded
 molecule or a rigid body.  Commands that currently use molecule
-templates (or will in the future) include:
+templates include:
 </P>
 <UL><LI><A HREF = "fix_deposit.html">fix deposit</A>
 <LI><A HREF = "fix_pour.html">fix pour</A>
@@ -116,6 +116,12 @@ internally.
 <LI><I>Special Bond Counts, Special Bonds</I> = special neighbor info
 <LI><I>Shake Flags, Shake Atoms, Shake Bond Types</I> = SHAKE info 
 </UL>
+<P>If a Bonds section is specified then the Special Bond Counts and
+Special Bonds sections must be also, since the latter is needed for
+LAMMPS to properly exclude or weight bonded pairwise interactions
+between bonded atoms.  See the <A HREF = "special_bonds.html">special_bonds</A>
+command for more details.
+</P>
 <P>IMPORTANT NOTE: Whether a section is required depends on how the
 molecule template is used by other LAMMPS commands.  For example, to
 add a molecule via the <A HREF = "fix_deposit.html">fix deposit</A> command, the
diff --git a/doc/molecule.txt b/doc/molecule.txt
index 1af3078c65..f437222851 100644
--- a/doc/molecule.txt
+++ b/doc/molecule.txt
@@ -26,7 +26,7 @@ molecule CO2 co2.txt :pre
 Define a molecule template that can be used as part of other LAMMPS
 commands, typically to define a collection of particles as a bonded
 molecule or a rigid body.  Commands that currently use molecule
-templates (or will in the future) include:
+templates include:
 
 "fix deposit"_fix_deposit.html
 "fix pour"_fix_pour.html
@@ -113,6 +113,12 @@ These are the allowed section keywords for the body of the file.
 {Special Bond Counts, Special Bonds} = special neighbor info
 {Shake Flags, Shake Atoms, Shake Bond Types} = SHAKE info :ul
 
+If a Bonds section is specified then the Special Bond Counts and
+Special Bonds sections must be also, since the latter is needed for
+LAMMPS to properly exclude or weight bonded pairwise interactions
+between bonded atoms.  See the "special_bonds"_special_bonds.html
+command for more details.
+
 IMPORTANT NOTE: Whether a section is required depends on how the
 molecule template is used by other LAMMPS commands.  For example, to
 add a molecule via the "fix deposit"_fix_deposit.html command, the