From 4819ef9e1e2db9835d29279a870430dc6d17b7fe Mon Sep 17 00:00:00 2001 From: sjplimp Date: Wed, 6 Mar 2013 16:46:43 +0000 Subject: [PATCH] git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9584 f3b2605a-c512-4ea7-a41b-209d697bcdaa --- doc/Section_start.html | 2 +- doc/Section_start.txt | 2 +- doc/read_dump.html | 4 ++++ doc/read_dump.txt | 4 ++++ doc/run_style.html | 24 +++++++++++++++++++++++- doc/run_style.txt | 24 +++++++++++++++++++++++- 6 files changed, 56 insertions(+), 4 deletions(-) diff --git a/doc/Section_start.html b/doc/Section_start.html index 8b207f90ed..8f1344dd13 100644 --- a/doc/Section_start.html +++ b/doc/Section_start.html @@ -287,7 +287,7 @@ This should create a libmpi_stubs.a file suitable for linking to LAMMPS. If the build fails, you will need to edit the STUBS/Makefile for your platform.

-

The file STUBS/mpi.cpp provides a CPU timer function called +

The file STUBS/mpi.c provides a CPU timer function called MPI_Wtime() that calls gettimeofday() . If your system doesn't support gettimeofday() , you'll need to insert code to call another timer. Note that the ANSI-standard function clock() rolls over after diff --git a/doc/Section_start.txt b/doc/Section_start.txt index 31e425f113..4a62294c84 100644 --- a/doc/Section_start.txt +++ b/doc/Section_start.txt @@ -281,7 +281,7 @@ This should create a libmpi_stubs.a file suitable for linking to LAMMPS. If the build fails, you will need to edit the STUBS/Makefile for your platform. -The file STUBS/mpi.cpp provides a CPU timer function called +The file STUBS/mpi.c provides a CPU timer function called MPI_Wtime() that calls gettimeofday() . If your system doesn't support gettimeofday() , you'll need to insert code to call another timer. Note that the ANSI-standard function clock() rolls over after diff --git a/doc/read_dump.html b/doc/read_dump.html index c570ff95b5..3bbf7c2d34 100644 --- a/doc/read_dump.html +++ b/doc/read_dump.html @@ -51,6 +51,10 @@

Examples: 

read_dump dump.file 5000 x y z
+read_dump dump.xyz 5 x y z format xyz box no
+read_dump dump.xyz 10 x y z format molfile box no reader xyz "../plugins"
+read_dump dump.dcd 0 x y z format molfile box yes reader dcd
+read_dump dump.file 1000 x y z vx vy vz format molfile box yes reader lammpstrj /usr/local/lib/vmd/plugins/LINUXAMD64/plugins/molfile
 read_dump dump.file 5000 x y vx vy trim yes
 read_dump ../run7/dump.file.gz 10000 x y z box yes 
 read_dump dump.xyz 5 x y z box no format xyz
diff --git a/doc/read_dump.txt b/doc/read_dump.txt
index 6eb99f571b..797639b0dc 100644
--- a/doc/read_dump.txt
+++ b/doc/read_dump.txt
@@ -41,6 +41,10 @@ keyword = {box} or {replace} or {purge} or {trim} or {add} or {label} or {scaled
 [Examples:]
 
 read_dump dump.file 5000 x y z
+read_dump dump.xyz 5 x y z format xyz box no
+read_dump dump.xyz 10 x y z format molfile box no reader xyz "../plugins"
+read_dump dump.dcd 0 x y z format molfile box yes reader dcd
+read_dump dump.file 1000 x y z vx vy vz format molfile box yes reader lammpstrj /usr/local/lib/vmd/plugins/LINUXAMD64/plugins/molfile
 read_dump dump.file 5000 x y vx vy trim yes
 read_dump ../run7/dump.file.gz 10000 x y z box yes 
 read_dump dump.xyz 5 x y z box no format xyz
diff --git a/doc/run_style.html b/doc/run_style.html
index 49445df879..2cb3ceaee9 100644
--- a/doc/run_style.html
+++ b/doc/run_style.html
@@ -15,7 +15,7 @@
 

 
run_style style args 
 

-