diff --git a/doc/prd.html b/doc/prd.html index 0fb398af87..cad9d670ea 100644 --- a/doc/prd.html +++ b/doc/prd.html @@ -53,14 +53,16 @@ prd 5000 100 10 10 100 1 54982 maxiter 100

Description:

-

Run Parallel Replica Dynamics (PRD) as described in Art Voter's -paper. PRD is a method for performing accelerated dynamics -that is suitable for infrequent-event systems that obey first-order -kinetics. To quote from the paper: "The dynamical evolution is -characterized by vibrational excursions within a potential basin, -punctuated by occasional transitions between basins." The transition -probability is characterized by p(t) = k*exp(-kt) where k is the rate -constant. +

Run Parallel Replica Dynamics (PRD) as described in this +paper by Art Voter. PRD is a method for performing +accelerated dynamics that is suitable for infrequent-event systems +that obey first-order kinetics. A good overview of accelerated +dynamics methods for such systems in given in this review +paper from the same group. To quote from the paper: "The +dynamical evolution is characterized by vibrational excursions within +a potential basin, punctuated by occasional transitions between +basins." The transition probability is characterized by p(t) = +k*exp(-kt) where k is the rate constant.

A PRD run is performed by running independent simulations on multiple replicas of the same system, which gives an effective enhancement in @@ -282,7 +284,11 @@ dt/reset and fix deposit. -

(Voter) Voter, Montalenti, Germann, Annual Review of Materials +

(Voter) Voter, Phys Rev B, 57, 13985 (1998). +

+ + +

(Voter2) Voter, Montalenti, Germann, Annual Review of Materials Research 32, 321 (2002).

diff --git a/doc/prd.txt b/doc/prd.txt index cb5ce3561d..7315f93117 100644 --- a/doc/prd.txt +++ b/doc/prd.txt @@ -40,14 +40,16 @@ prd 5000 100 10 10 100 1 54982 maxiter 100 :pre [Description:] -Run Parallel Replica Dynamics (PRD) as described in "Art Voter's -paper"_#Voter. PRD is a method for performing accelerated dynamics -that is suitable for infrequent-event systems that obey first-order -kinetics. To quote from the paper: "The dynamical evolution is -characterized by vibrational excursions within a potential basin, -punctuated by occasional transitions between basins." The transition -probability is characterized by p(t) = k*exp(-kt) where k is the rate -constant. +Run Parallel Replica Dynamics (PRD) as described in "this +paper"_#Voter by Art Voter. PRD is a method for performing +accelerated dynamics that is suitable for infrequent-event systems +that obey first-order kinetics. A good overview of accelerated +dynamics methods for such systems in given in "this review +paper"_#Voter2 from the same group. To quote from the paper: "The +dynamical evolution is characterized by vibrational excursions within +a potential basin, punctuated by occasional transitions between +basins." The transition probability is characterized by p(t) = +k*exp(-kt) where k is the rate constant. A PRD run is performed by running independent simulations on multiple replicas of the same system, which gives an effective enhancement in @@ -268,5 +270,8 @@ The option defaults are {min} = 40 50 0.1 0.1, no {temp} setting, and :line :link(Voter) -[(Voter)] Voter, Montalenti, Germann, Annual Review of Materials +[(Voter)] Voter, Phys Rev B, 57, 13985 (1998). + +:link(Voter2) +[(Voter2)] Voter, Montalenti, Germann, Annual Review of Materials Research 32, 321 (2002).