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24
doc/prd.html
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@ -53,14 +53,16 @@ prd 5000 100 10 10 100 1 54982 maxiter 100
</PRE>
<P><B>Description:</B>
</P>
<P>Run Parallel Replica Dynamics (PRD) as described in <A HREF = "#Voter">Art Voter's
paper</A>. PRD is a method for performing accelerated dynamics
that is suitable for infrequent-event systems that obey first-order
kinetics. To quote from the paper: "The dynamical evolution is
characterized by vibrational excursions within a potential basin,
punctuated by occasional transitions between basins." The transition
probability is characterized by p(t) = k*exp(-kt) where k is the rate
constant.
<P>Run Parallel Replica Dynamics (PRD) as described in <A HREF = "#Voter">this
paper</A> by Art Voter. PRD is a method for performing
accelerated dynamics that is suitable for infrequent-event systems
that obey first-order kinetics. A good overview of accelerated
dynamics methods for such systems in given in <A HREF = "#Voter2">this review
paper</A> from the same group. To quote from the paper: "The
dynamical evolution is characterized by vibrational excursions within
a potential basin, punctuated by occasional transitions between
basins." The transition probability is characterized by p(t) =
k*exp(-kt) where k is the rate constant.
</P>
<P>A PRD run is performed by running independent simulations on multiple
replicas of the same system, which gives an effective enhancement in
@ -282,7 +284,11 @@ dt/reset</A> and <A HREF = "fix_deposity.html">fix deposit</A>.
<A NAME = "Voter"></A>
<P><B>(Voter)</B> Voter, Montalenti, Germann, Annual Review of Materials
<P><B>(Voter)</B> Voter, Phys Rev B, 57, 13985 (1998).
</P>
<A NAME = "Voter2"></A>
<P><B>(Voter2)</B> Voter, Montalenti, Germann, Annual Review of Materials
Research 32, 321 (2002).
</P>
</HTML>

23
doc/prd.txt
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@ -40,14 +40,16 @@ prd 5000 100 10 10 100 1 54982 maxiter 100 :pre
[Description:]
Run Parallel Replica Dynamics (PRD) as described in "Art Voter's
paper"_#Voter. PRD is a method for performing accelerated dynamics
that is suitable for infrequent-event systems that obey first-order
kinetics. To quote from the paper: "The dynamical evolution is
characterized by vibrational excursions within a potential basin,
punctuated by occasional transitions between basins." The transition
probability is characterized by p(t) = k*exp(-kt) where k is the rate
constant.
Run Parallel Replica Dynamics (PRD) as described in "this
paper"_#Voter by Art Voter. PRD is a method for performing
accelerated dynamics that is suitable for infrequent-event systems
that obey first-order kinetics. A good overview of accelerated
dynamics methods for such systems in given in "this review
paper"_#Voter2 from the same group. To quote from the paper: "The
dynamical evolution is characterized by vibrational excursions within
a potential basin, punctuated by occasional transitions between
basins." The transition probability is characterized by p(t) =
k*exp(-kt) where k is the rate constant.
A PRD run is performed by running independent simulations on multiple
replicas of the same system, which gives an effective enhancement in
@ -268,5 +270,8 @@ The option defaults are {min} = 40 50 0.1 0.1, no {temp} setting, and
:line
:link(Voter)
[(Voter)] Voter, Montalenti, Germann, Annual Review of Materials
[(Voter)] Voter, Phys Rev B, 57, 13985 (1998).
:link(Voter2)
[(Voter2)] Voter, Montalenti, Germann, Annual Review of Materials
Research 32, 321 (2002).