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@ -59,9 +59,9 @@ we can improve the LAMMPS documentation.
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<BR>
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<BR>
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2.2 <A HREF = "Section_start.html#2_2">Making LAMMPS</A>
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2.2 <A HREF = "Section_start.html#2_2">Making LAMMPS</A>
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<BR>
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<BR>
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2.3 <A HREF = "#2_3">Making LAMMPS with optional packages</A>
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2.3 <A HREF = "Section_start.html#2_3">Making LAMMPS with optional packages</A>
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<BR>
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<BR>
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2.4 <A HREF = "#2_4">Building LAMMPS as a library</A>
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2.4 <A HREF = "Section_start.html#2_4">Building LAMMPS as a library</A>
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<BR>
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<BR>
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2.5 <A HREF = "Section_start.html#2_5">Running LAMMPS</A>
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2.5 <A HREF = "Section_start.html#2_5">Running LAMMPS</A>
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<BR>
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<BR>
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@ -47,8 +47,8 @@ we can improve the LAMMPS documentation.
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"Getting started"_Section_start.html :l
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"Getting started"_Section_start.html :l
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2.1 "What's in the LAMMPS distribution"_2_1 :ulb,b
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2.1 "What's in the LAMMPS distribution"_2_1 :ulb,b
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2.2 "Making LAMMPS"_2_2 :b
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2.2 "Making LAMMPS"_2_2 :b
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2.3 "Making LAMMPS with optional packages"_#2_3 :b
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2.3 "Making LAMMPS with optional packages"_2_3 :b
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2.4 "Building LAMMPS as a library"_#2_4 :b
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2.4 "Building LAMMPS as a library"_2_4 :b
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2.5 "Running LAMMPS"_2_5 :b
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2.5 "Running LAMMPS"_2_5 :b
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2.6 "Command-line options"_2_6 :b
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2.6 "Command-line options"_2_6 :b
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2.7 "Screen output"_2_7 :b
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2.7 "Screen output"_2_7 :b
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@ -31,7 +31,7 @@
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group of granular atoms as a function of z depth in the granular
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group of granular atoms as a function of z depth in the granular
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system. The results are written to 3 files named file.den, file.vel,
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system. The results are written to 3 files named file.den, file.vel,
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and file.str. The z bins begin at the bottom of the system and extend
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and file.str. The z bins begin at the bottom of the system and extend
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upward with a thickness of zlayer for each bin. The quantities
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upward with a thickness of <I>zlayer</I> for each bin. The quantities
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written to the file are averaged over all atoms in the bin.
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written to the file are averaged over all atoms in the bin.
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</P>
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</P>
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<P><B>Restrictions:</B>
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<P><B>Restrictions:</B>
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@ -28,7 +28,7 @@ Compute aggregate density, velocity, and stress diagnostics for a
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group of granular atoms as a function of z depth in the granular
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group of granular atoms as a function of z depth in the granular
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system. The results are written to 3 files named file.den, file.vel,
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system. The results are written to 3 files named file.den, file.vel,
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and file.str. The z bins begin at the bottom of the system and extend
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and file.str. The z bins begin at the bottom of the system and extend
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upward with a thickness of zlayer for each bin. The quantities
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upward with a thickness of {zlayer} for each bin. The quantities
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written to the file are averaged over all atoms in the bin.
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written to the file are averaged over all atoms in the bin.
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[Restrictions:]
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[Restrictions:]
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@ -38,6 +38,13 @@ by a distance delta (e.g. due to <A HREF = "fix_nve.html">fix nve</A>), then it
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put back inside the box by the same delta and the sign of the
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put back inside the box by the same delta and the sign of the
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corresponding component of its velocity is flipped.
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corresponding component of its velocity is flipped.
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</P>
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</P>
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<P>This fix performs its operations at the same point in the timestep as
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other time integration fixes, such as <A HREF = "fix_nve.html">fix nve</A>, <A HREF = "fix_nvt.html">fix
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nvt</A>, or <A HREF = "fix_npt.html">fix npt</A>. It is important that it
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be the last such fix specified in the input script, since it changes
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the atom positions set by those fixes to insure atoms stay within the
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simulation box.
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</P>
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<P><B>Restrictions:</B> none
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<P><B>Restrictions:</B> none
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</P>
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</P>
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<P><B>Related commands:</B>
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<P><B>Related commands:</B>
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@ -35,6 +35,13 @@ by a distance delta (e.g. due to "fix nve"_fix_nve.html), then it is
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put back inside the box by the same delta and the sign of the
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put back inside the box by the same delta and the sign of the
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corresponding component of its velocity is flipped.
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corresponding component of its velocity is flipped.
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This fix performs its operations at the same point in the timestep as
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other time integration fixes, such as "fix nve"_fix_nve.html, "fix
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nvt"_fix_nvt.html, or "fix npt"_fix_npt.html. It is important that it
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be the last such fix specified in the input script, since it changes
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the atom positions set by those fixes to insure atoms stay within the
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simulation box.
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[Restrictions:] none
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[Restrictions:] none
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[Related commands:]
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[Related commands:]
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