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remove non-ASCII characters from doc source files
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@ -464,7 +464,7 @@ supported.
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[References:]
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Brown, W.M., Carrillo, J.-M.Y., Mishra, B., Gavhane, N., Thakker, F.M., De Kraker, A.R., Yamada, M., Ang, J.A., Plimpton, S.J., “Optimizing Classical Molecular Dynamics in LAMMPS,” in Intel Xeon Phi Processor High Performance Programming: Knights Landing Edition, J. Jeffers, J. Reinders, A. Sodani, Eds. Morgan Kaufmann. :ulb,l
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Brown, W.M., Carrillo, J.-M.Y., Mishra, B., Gavhane, N., Thakker, F.M., De Kraker, A.R., Yamada, M., Ang, J.A., Plimpton, S.J., "Optimizing Classical Molecular Dynamics in LAMMPS," in Intel Xeon Phi Processor High Performance Programming: Knights Landing Edition, J. Jeffers, J. Reinders, A. Sodani, Eds. Morgan Kaufmann. :ulb,l
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Brown, W. M., Semin, A., Hebenstreit, M., Khvostov, S., Raman, K., Plimpton, S.J. Increasing Molecular Dynamics Simulation Rates with an 8-Fold Increase in Electrical Power Efficiency. 2016 International Conference for High Performance Computing. In press. :l
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@ -67,6 +67,6 @@ LAMMPS"_Section_start.html#start_3 section for more info.
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:link(KC05)
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[(KC05)] A. N. Kolmogorov, V. H. Crespi, Phys. Rev. B 71, 235415 (2005)
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:link(vanWijk)
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[(vanWijk)] M. M. van Wijk, A. Schuring, M. I. Katsnelson, and A. Fasolino,
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:link(vanWijk)
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[(vanWijk)] M. M. van Wijk, A. Schuring, M. I. Katsnelson, and A. Fasolino,
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Physical Review Letters, 113, 135504 (2014)
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@ -50,7 +50,7 @@ NOTE: These pair styles have to be used together with the related oxDNA bond sty
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"bond_style oxdna/fene"_bond_oxdna.html). The coefficients
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in the above example have to be kept fixed and cannot be changed without reparametrizing the entire model.
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Example input and data files can be found in examples/USER/cgdna/examples/duplex1/ and /duplex2/.
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Example input and data files can be found in examples/USER/cgdna/examples/duplex1/ and /duplex2/.
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A simple python setup tool which creates single straight or helical DNA strands,
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DNA duplexes or arrays of DNA duplexes can be found in examples/USER/cgdna/util/.
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A technical report with more information on the model, the structure of the input file,
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