This section describes the structure of a typical LAMMPS input script.
The "examples" directory in the LAMMPS distribution contains many
sample input scripts; the corresponding problems are discussed in
-this section, and animated on the LAMMPS WWW
-Site.
+Section_example, and animated on the LAMMPS
+WWW Site.
The example input scripts included in the LAMMPS distribution and
-highlighted in this section also show how to
+highlighted in Section_example also show how to
setup and run various kinds of simulations.
(3) Use LAMMPS as a library called by another code. In this case the
other code is the driver and calls LAMMPS as needed. Or a wrapper
@@ -669,8 +669,8 @@ example, from C++ you could create one (or more) "instances" of
LAMMPS, pass it an input script to process, or execute individual
commands, all by invoking the correct class methods in LAMMPS. From C
or Fortran you can make function calls to do the same things. See
-this section of the manual for a description of
-the Python wrapper provided with LAMMPS that operates through the
+Section_python of the manual for a description
+of the Python wrapper provided with LAMMPS that operates through the
LAMMPS library interface.
The files src/library.cpp and library.h contain the C-style interface
diff --git a/doc/Section_howto.txt b/doc/Section_howto.txt
index 00da9985a4..cc025cfd34 100644
--- a/doc/Section_howto.txt
+++ b/doc/Section_howto.txt
@@ -33,7 +33,7 @@ This section describes how to perform common tasks using LAMMPS.
6.21 "Calculating viscosity"_#howto_21 :all(b)
The example input scripts included in the LAMMPS distribution and
-highlighted in "this section"_Section_example.html also show how to
+highlighted in "Section_example"_Section_example.html also show how to
setup and run various kinds of simulations.
:line
@@ -175,7 +175,7 @@ used in the CHARMM, AMBER, and DREIDING force fields. Setting
coefficients is done in the input data file via the
"read_data"_read_data.html command or in the input script with
commands like "pair_coeff"_pair_coeff.html or
-"bond_coeff"_bond_coeff.html. See "this section"_Section_tools.html
+"bond_coeff"_bond_coeff.html. See "Section_tools"_Section_tools.html
for additional tools that can use CHARMM or AMBER to assign force
field coefficients and convert their output into LAMMPS input.
@@ -628,8 +628,8 @@ processors to start up another program). In the latter case the
stand-alone code could communicate with LAMMPS thru files that the
command writes and reads.
-See "this section"_Section_modify.html of the documentation for how to
-add a new command to LAMMPS.
+See "Section_modify"_Section_modify.html of the documentation for how
+to add a new command to LAMMPS.
(3) Use LAMMPS as a library called by another code. In this case the
other code is the driver and calls LAMMPS as needed. Or a wrapper
@@ -663,8 +663,8 @@ example, from C++ you could create one (or more) "instances" of
LAMMPS, pass it an input script to process, or execute individual
commands, all by invoking the correct class methods in LAMMPS. From C
or Fortran you can make function calls to do the same things. See
-"this section"_Section_python.html of the manual for a description of
-the Python wrapper provided with LAMMPS that operates through the
+"Section_python"_Section_python.html of the manual for a description
+of the Python wrapper provided with LAMMPS that operates through the
LAMMPS library interface.
The files src/library.cpp and library.h contain the C-style interface
diff --git a/doc/Section_intro.html b/doc/Section_intro.html
index d5e5affb2f..678f734953 100644
--- a/doc/Section_intro.html
+++ b/doc/Section_intro.html
@@ -45,9 +45,9 @@ parallel machines and Beowulf-style clusters.
LAMMPS can model systems with only a few particles up to millions or
-billions. See this section for information on LAMMPS
-performance and scalability, or the Benchmarks section of the LAMMPS
-WWW Site.
+billions. See Section_perf for information on
+LAMMPS performance and scalability, or the Benchmarks section of the
+LAMMPS WWW Site.
LAMMPS is a freely-available open-source code, distributed under the
terms of the GNU Public License, which means you can use or
@@ -58,13 +58,14 @@ discussion of the open-source philosophy.
LAMMPS is designed to be easy to modify or extend with new
capabilities, such as new force fields, atom types, boundary
-conditions, or diagnostics. See this section for
-more details.
+conditions, or diagnostics. See Section_modify
+for more details.
The current version of LAMMPS is written in C++. Earlier versions
-were written in F77 and F90. See this section
-for more information on different versions. All versions can be
-downloaded from the LAMMPS WWW Site.
+were written in F77 and F90. See
+Section_history for more information on
+different versions. All versions can be downloaded from the LAMMPS
+WWW Site.
LAMMPS was originally developed under a US Department of Energy CRADA
(Cooperative Research and Development Agreement) between two DOE labs
@@ -97,8 +98,8 @@ LAMMPS are listed in this section.
This section highlights LAMMPS features, with pointers to specific
commands which give more details. If LAMMPS doesn't have your
favorite interatomic potential, boundary condition, or atom type, see
-this section, which describes how you can add it to
-LAMMPS.
+Section_modify, which describes how you can add
+it to LAMMPS.
Georg Gunzenmuller (EMI), georg.ganzenmueller at emi.fhg.de, USER-SPH package
-As discussed in this section, LAMMPS originated
-as a cooperative project between DOE labs and industrial
+
As discussed in Section_history, LAMMPS
+originated as a cooperative project between DOE labs and industrial
partners. Folks involved in the design and testing of the original
version of LAMMPS were the following:
diff --git a/doc/Section_intro.txt b/doc/Section_intro.txt
index 2619ef8aee..2a3d77530e 100644
--- a/doc/Section_intro.txt
+++ b/doc/Section_intro.txt
@@ -41,9 +41,9 @@ parallel machines and Beowulf-style clusters.
:link(mpi,http://www-unix.mcs.anl.gov/mpi)
LAMMPS can model systems with only a few particles up to millions or
-billions. See "this section"_Section_perf.html for information on LAMMPS
-performance and scalability, or the Benchmarks section of the "LAMMPS
-WWW Site"_lws.
+billions. See "Section_perf"_Section_perf.html for information on
+LAMMPS performance and scalability, or the Benchmarks section of the
+"LAMMPS WWW Site"_lws.
LAMMPS is a freely-available open-source code, distributed under the
terms of the "GNU Public License"_gnu, which means you can use or
@@ -54,13 +54,14 @@ discussion of the open-source philosophy.
LAMMPS is designed to be easy to modify or extend with new
capabilities, such as new force fields, atom types, boundary
-conditions, or diagnostics. See "this section"_Section_modify.html for
-more details.
+conditions, or diagnostics. See "Section_modify"_Section_modify.html
+for more details.
The current version of LAMMPS is written in C++. Earlier versions
-were written in F77 and F90. See "this section"_Section_history.html
-for more information on different versions. All versions can be
-downloaded from the "LAMMPS WWW Site"_lws.
+were written in F77 and F90. See
+"Section_history"_Section_history.html for more information on
+different versions. All versions can be downloaded from the "LAMMPS
+WWW Site"_lws.
LAMMPS was originally developed under a US Department of Energy CRADA
(Cooperative Research and Development Agreement) between two DOE labs
@@ -93,8 +94,8 @@ LAMMPS are listed in "this section"_#intro_5.
This section highlights LAMMPS features, with pointers to specific
commands which give more details. If LAMMPS doesn't have your
favorite interatomic potential, boundary condition, or atom type, see
-"this section"_Section_modify.html, which describes how you can add it to
-LAMMPS.
+"Section_modify"_Section_modify.html, which describes how you can add
+it to LAMMPS.
General features :h4
@@ -312,7 +313,7 @@ Similarly, LAMMPS creates output files in a simple format. Most users
post-process these files with their own analysis tools or re-format
them for input into other programs, including visualization packages.
If you are convinced you need to compute something on-the-fly as
-LAMMPS runs, see "this section"_Section_modify.html for a discussion
+LAMMPS runs, see "Section_modify"_Section_modify.html for a discussion
of how you can use the "dump"_dump.html and "compute"_compute.html and
"fix"_fix.html commands to print out data of your choosing. Keep in
mind that complicated computations can slow down the molecular
@@ -334,7 +335,7 @@ following packages:
"RasMol"_http://www.openrasmol.org :ul
Other features that LAMMPS does not yet (and may never) support are
-discussed in "this section"_Section_history.html.
+discussed in "Section_history"_Section_history.html.
Finally, these are freely-available molecular dynamics codes, most of
them parallel, which may be well-suited to the problems you want to
@@ -422,7 +423,7 @@ directory. :l
The tools sub-directory of the LAMMPS distribution has various
stand-alone codes for pre- and post-processing of LAMMPS data. More
-details are given in "this section"_Section_tools.html. If you write
+details are given in "Section_tools"_Section_tools.html. If you write
a new tool that users will find useful, it can be added to the LAMMPS
distribution. :l
@@ -513,8 +514,8 @@ Christoph Kloss (JKU), Christoph.Kloss at jku.at, USER-LIGGGHTS package for gran
Metin Aktulga (LBL), hmaktulga at lbl.gov, USER-REAXC package for C version of ReaxFF
Georg Gunzenmuller (EMI), georg.ganzenmueller at emi.fhg.de, USER-SPH package :ul
-As discussed in "this section"_Section_history.html, LAMMPS originated
-as a cooperative project between DOE labs and industrial
+As discussed in "Section_history"_Section_history.html, LAMMPS
+originated as a cooperative project between DOE labs and industrial
partners. Folks involved in the design and testing of the original
version of LAMMPS were the following:
diff --git a/doc/Section_start.html b/doc/Section_start.html
index 60badbb05e..a9048e5ee2 100644
--- a/doc/Section_start.html
+++ b/doc/Section_start.html
@@ -544,7 +544,7 @@ known to your executable.
There are two kinds of packages in LAMMPS, standard and user packages.
More information about the contents of standard and user packages is
-given in this section of the manual. The
+given in Section_packages of the manual. The
difference between standard and user packages is as follows:
Standard packages are supported by the LAMMPS developers and are
@@ -638,7 +638,7 @@ libraries to be compiled first. If you get a LAMMPS build error about
a missing library, this is likely the reason. The source code for
these libraries is included in the LAMMPS distribution under the "lib"
directory. Look at the lib/README file for a list of these or see
-this section of the doc pages.
+Section_packages of the doc pages.
Each lib directory has a README file (e.g. lib/reax/README) with
instructions on how to build that library. Typically this is done
@@ -718,9 +718,9 @@ src/library.cpp and src/library.h.
of C++ and C codes that invoke LAMMPS thru its library interface.
There are other examples as well in the couple directory which are
discussed in this section of the manual.
-See this section of the manual for a description
-of the Python wrapper provided with LAMMPS that operates through the
-LAMMPS library interface.
+See Section_python of the manual for a
+description of the Python wrapper provided with LAMMPS that operates
+through the LAMMPS library interface.
The files src/library.cpp and library.h contain the C-style interface
to LAMMPS. See this section of the
@@ -823,7 +823,7 @@ than your working directory, which is probably not what you want.
If LAMMPS encounters errors in the input script or while running a
simulation it will print an ERROR message and stop or a WARNING
-message and continue. See this section for a
+message and continue. See Section_errors for a
discussion of the various kinds of errors LAMMPS can or can't detect,
a list of all ERROR and WARNING messages, and what to do about them.
@@ -1209,7 +1209,7 @@ communication, roughly 75% in the example above.
The current C++ began with a complete rewrite of LAMMPS 2001, which
was written in F90. Features of earlier versions of LAMMPS are listed
-in this section. The F90 and F77 versions
+in Section_history. The F90 and F77 versions
(2001 and 99) are also freely distributed as open-source codes; check
the LAMMPS WWW Site for distribution information if you prefer
those versions. The 99 and 2001 versions are no longer under active
diff --git a/doc/Section_start.txt b/doc/Section_start.txt
index 061d5da04a..a614417f7e 100644
--- a/doc/Section_start.txt
+++ b/doc/Section_start.txt
@@ -538,7 +538,7 @@ known to your executable.
There are two kinds of packages in LAMMPS, standard and user packages.
More information about the contents of standard and user packages is
-given in "this section"_Section_packages.html of the manual. The
+given in "Section_packages"_Section_packages.html of the manual. The
difference between standard and user packages is as follows:
Standard packages are supported by the LAMMPS developers and are
@@ -632,7 +632,7 @@ libraries to be compiled first. If you get a LAMMPS build error about
a missing library, this is likely the reason. The source code for
these libraries is included in the LAMMPS distribution under the "lib"
directory. Look at the lib/README file for a list of these or see
-"this section"_Section_packages.html of the doc pages.
+"Section_packages"_Section_packages.html of the doc pages.
Each lib directory has a README file (e.g. lib/reax/README) with
instructions on how to build that library. Typically this is done
@@ -712,9 +712,9 @@ See the sample codes couple/simple/simple.cpp and simple.c as examples
of C++ and C codes that invoke LAMMPS thru its library interface.
There are other examples as well in the couple directory which are
discussed in "this section"_Section_howto.html#howto_10 of the manual.
-See "this section"_Section_python.html of the manual for a description
-of the Python wrapper provided with LAMMPS that operates through the
-LAMMPS library interface.
+See "Section_python"_Section_python.html of the manual for a
+description of the Python wrapper provided with LAMMPS that operates
+through the LAMMPS library interface.
The files src/library.cpp and library.h contain the C-style interface
to LAMMPS. See "this section"_Section_howto.html#howto_19 of the
@@ -814,7 +814,7 @@ than your working directory, which is probably not what you want.
If LAMMPS encounters errors in the input script or while running a
simulation it will print an ERROR message and stop or a WARNING
-message and continue. See "this section"_Section_errors.html for a
+message and continue. See "Section_errors"_Section_errors.html for a
discussion of the various kinds of errors LAMMPS can or can't detect,
a list of all ERROR and WARNING messages, and what to do about them.
@@ -1200,7 +1200,7 @@ communication, roughly 75% in the example above.
The current C++ began with a complete rewrite of LAMMPS 2001, which
was written in F90. Features of earlier versions of LAMMPS are listed
-in "this section"_Section_history.html. The F90 and F77 versions
+in "Section_history"_Section_history.html. The F90 and F77 versions
(2001 and 99) are also freely distributed as open-source codes; check
the "LAMMPS WWW Site"_lws for distribution information if you prefer
those versions. The 99 and 2001 versions are no longer under active
diff --git a/doc/angle_charmm.html b/doc/angle_charmm.html
index 3109127730..9cc950f568 100644
--- a/doc/angle_charmm.html
+++ b/doc/angle_charmm.html
@@ -50,12 +50,12 @@ internally; hence the units of K are in energy/radian^2.
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -67,8 +67,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/angle_charmm.txt b/doc/angle_charmm.txt
index f980d516e0..78500a5387 100644
--- a/doc/angle_charmm.txt
+++ b/doc/angle_charmm.txt
@@ -46,12 +46,12 @@ internally; hence the units of K are in energy/radian^2.
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -63,8 +63,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/angle_class2.html b/doc/angle_class2.html
index e80f4d733c..ddc19dd1b2 100644
--- a/doc/angle_class2.html
+++ b/doc/angle_class2.html
@@ -82,12 +82,12 @@ same value from the Ea formula.
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -99,8 +99,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/angle_class2.txt b/doc/angle_class2.txt
index f9d48f4efd..36a16e8367 100644
--- a/doc/angle_class2.txt
+++ b/doc/angle_class2.txt
@@ -78,12 +78,12 @@ same value from the Ea formula.
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -95,8 +95,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/angle_cosine.html b/doc/angle_cosine.html
index cb3c29304d..1c376614a1 100644
--- a/doc/angle_cosine.html
+++ b/doc/angle_cosine.html
@@ -39,12 +39,12 @@ or read_restart commands:
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -56,8 +56,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/angle_cosine.txt b/doc/angle_cosine.txt
index 80a380d502..9c7b722976 100644
--- a/doc/angle_cosine.txt
+++ b/doc/angle_cosine.txt
@@ -35,12 +35,12 @@ K (energy) :ul
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -52,8 +52,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/angle_cosine_delta.html b/doc/angle_cosine_delta.html
index 1b034e85e8..dd8c9965c9 100644
--- a/doc/angle_cosine_delta.html
+++ b/doc/angle_cosine_delta.html
@@ -44,12 +44,12 @@ internally.
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -61,8 +61,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/angle_cosine_delta.txt b/doc/angle_cosine_delta.txt
index 38128b9dab..92b809b675 100644
--- a/doc/angle_cosine_delta.txt
+++ b/doc/angle_cosine_delta.txt
@@ -40,12 +40,12 @@ internally.
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -57,8 +57,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/angle_cosine_periodic.html b/doc/angle_cosine_periodic.html
index 1078488fcc..55469c2c66 100644
--- a/doc/angle_cosine_periodic.html
+++ b/doc/angle_cosine_periodic.html
@@ -52,12 +52,12 @@ geometry.
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -69,8 +69,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/angle_cosine_periodic.txt b/doc/angle_cosine_periodic.txt
index 8c3ac1bb3d..c5ea3563bb 100644
--- a/doc/angle_cosine_periodic.txt
+++ b/doc/angle_cosine_periodic.txt
@@ -48,12 +48,12 @@ geometry.
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -65,8 +65,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/angle_cosine_shift.html b/doc/angle_cosine_shift.html
index b20940c567..76b1cea55e 100644
--- a/doc/angle_cosine_shift.html
+++ b/doc/angle_cosine_shift.html
@@ -42,12 +42,12 @@ or read_restart commands:
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -59,8 +59,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/angle_cosine_shift.txt b/doc/angle_cosine_shift.txt
index 40fa449470..cd2b7fe100 100644
--- a/doc/angle_cosine_shift.txt
+++ b/doc/angle_cosine_shift.txt
@@ -38,12 +38,12 @@ theta (angle) :ul
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -55,8 +55,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/angle_cosine_shift_exp.html b/doc/angle_cosine_shift_exp.html
index 8540a8e84d..3a30784ee5 100644
--- a/doc/angle_cosine_shift_exp.html
+++ b/doc/angle_cosine_shift_exp.html
@@ -54,12 +54,12 @@ or read_restart commands:
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -71,8 +71,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/angle_cosine_shift_exp.txt b/doc/angle_cosine_shift_exp.txt
index 46f4758955..f9b2efdf91 100644
--- a/doc/angle_cosine_shift_exp.txt
+++ b/doc/angle_cosine_shift_exp.txt
@@ -50,12 +50,12 @@ A (real number) :ul
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -67,8 +67,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/angle_cosine_squared.html b/doc/angle_cosine_squared.html
index d2440aeee9..08af469010 100644
--- a/doc/angle_cosine_squared.html
+++ b/doc/angle_cosine_squared.html
@@ -44,12 +44,12 @@ internally.
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -61,8 +61,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/angle_cosine_squared.txt b/doc/angle_cosine_squared.txt
index d313a1b340..ec7dbd2176 100644
--- a/doc/angle_cosine_squared.txt
+++ b/doc/angle_cosine_squared.txt
@@ -40,12 +40,12 @@ internally.
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -57,8 +57,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/angle_harmonic.html b/doc/angle_harmonic.html
index ca1c1662f0..4242327dbb 100644
--- a/doc/angle_harmonic.html
+++ b/doc/angle_harmonic.html
@@ -44,12 +44,12 @@ internally; hence the units of K are in energy/radian^2.
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -61,8 +61,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/angle_harmonic.txt b/doc/angle_harmonic.txt
index 45deb90e4f..b0695631e3 100644
--- a/doc/angle_harmonic.txt
+++ b/doc/angle_harmonic.txt
@@ -40,12 +40,12 @@ internally; hence the units of K are in energy/radian^2.
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -57,8 +57,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/angle_table.html b/doc/angle_table.html
index f9cc6701a5..992eeeb262 100644
--- a/doc/angle_table.html
+++ b/doc/angle_table.html
@@ -125,12 +125,12 @@ one that matches the specified keyword.
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -142,8 +142,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/angle_table.txt b/doc/angle_table.txt
index 21ef6b2451..008d0c21f2 100644
--- a/doc/angle_table.txt
+++ b/doc/angle_table.txt
@@ -121,12 +121,12 @@ one that matches the specified keyword.
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -138,8 +138,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/bond_class2.html b/doc/bond_class2.html
index b9178e7678..d12a5254a3 100644
--- a/doc/bond_class2.html
+++ b/doc/bond_class2.html
@@ -44,12 +44,12 @@ or read_restart commands:
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -61,8 +61,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/bond_class2.txt b/doc/bond_class2.txt
index fa9c6bb25c..c6a9c317ed 100644
--- a/doc/bond_class2.txt
+++ b/doc/bond_class2.txt
@@ -40,12 +40,12 @@ K4 (energy/distance^4) :ul
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -57,8 +57,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/bond_fene.html b/doc/bond_fene.html
index 8d837185f2..06efe05a1d 100644
--- a/doc/bond_fene.html
+++ b/doc/bond_fene.html
@@ -46,12 +46,12 @@ or read_restart commands:
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -63,8 +63,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/bond_fene.txt b/doc/bond_fene.txt
index 0ed8bb737e..8ce6ae89c6 100644
--- a/doc/bond_fene.txt
+++ b/doc/bond_fene.txt
@@ -42,12 +42,12 @@ sigma (distance) :ul
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -59,8 +59,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/bond_fene_expand.html b/doc/bond_fene_expand.html
index 0d8856914b..a68e76f04c 100644
--- a/doc/bond_fene_expand.html
+++ b/doc/bond_fene_expand.html
@@ -51,12 +51,12 @@ or read_restart commands:
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -68,8 +68,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/bond_fene_expand.txt b/doc/bond_fene_expand.txt
index 8738f2b6a6..997921cd7d 100644
--- a/doc/bond_fene_expand.txt
+++ b/doc/bond_fene_expand.txt
@@ -47,12 +47,12 @@ delta (distance) :ul
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -64,8 +64,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/bond_harmonic.html b/doc/bond_harmonic.html
index 34d1dce346..3fbe7041ce 100644
--- a/doc/bond_harmonic.html
+++ b/doc/bond_harmonic.html
@@ -41,12 +41,12 @@ or read_restart commands:
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -58,8 +58,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/bond_harmonic.txt b/doc/bond_harmonic.txt
index fa60049054..df5bdeeffb 100644
--- a/doc/bond_harmonic.txt
+++ b/doc/bond_harmonic.txt
@@ -37,12 +37,12 @@ r0 (distance) :ul
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -54,8 +54,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/bond_harmonic_shift.html b/doc/bond_harmonic_shift.html
index 6c2647b189..0b9b3f6c18 100644
--- a/doc/bond_harmonic_shift.html
+++ b/doc/bond_harmonic_shift.html
@@ -46,12 +46,12 @@ or read_restart commands:
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -63,8 +63,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/bond_harmonic_shift.txt b/doc/bond_harmonic_shift.txt
index 1a72a6c74c..0ca376089d 100644
--- a/doc/bond_harmonic_shift.txt
+++ b/doc/bond_harmonic_shift.txt
@@ -40,12 +40,12 @@ rc (distance) :ul
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -57,8 +57,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/bond_harmonic_shift_cut.html b/doc/bond_harmonic_shift_cut.html
index 7af0c24101..b7b8e30649 100644
--- a/doc/bond_harmonic_shift_cut.html
+++ b/doc/bond_harmonic_shift_cut.html
@@ -44,12 +44,12 @@ or read_restart commands:
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -61,8 +61,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/bond_harmonic_shift_cut.txt b/doc/bond_harmonic_shift_cut.txt
index cce6033343..847a455413 100644
--- a/doc/bond_harmonic_shift_cut.txt
+++ b/doc/bond_harmonic_shift_cut.txt
@@ -40,12 +40,12 @@ rc (distance) :ul
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -57,8 +57,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/bond_morse.html b/doc/bond_morse.html
index bc436c26d0..3c60514382 100644
--- a/doc/bond_morse.html
+++ b/doc/bond_morse.html
@@ -42,12 +42,12 @@ or read_restart commands:
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -59,8 +59,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/bond_morse.txt b/doc/bond_morse.txt
index fdecd281fe..b399b02e93 100644
--- a/doc/bond_morse.txt
+++ b/doc/bond_morse.txt
@@ -38,12 +38,12 @@ r0 (distance) :ul
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -55,8 +55,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/bond_nonlinear.html b/doc/bond_nonlinear.html
index bbe7778a7c..c511c2c956 100644
--- a/doc/bond_nonlinear.html
+++ b/doc/bond_nonlinear.html
@@ -42,12 +42,12 @@ or read_restart commands:
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -59,8 +59,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/bond_nonlinear.txt b/doc/bond_nonlinear.txt
index ef5f87b2b1..e0cd987b66 100644
--- a/doc/bond_nonlinear.txt
+++ b/doc/bond_nonlinear.txt
@@ -38,12 +38,12 @@ lamda (distance) :ul
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -55,8 +55,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/bond_quartic.html b/doc/bond_quartic.html
index fddb40acaf..fc138a2989 100644
--- a/doc/bond_quartic.html
+++ b/doc/bond_quartic.html
@@ -77,12 +77,12 @@ delete_bonds all bond 0 remove
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -94,8 +94,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/bond_quartic.txt b/doc/bond_quartic.txt
index d4304f2929..b0a7ff4bc4 100644
--- a/doc/bond_quartic.txt
+++ b/doc/bond_quartic.txt
@@ -73,12 +73,12 @@ delete_bonds all bond 0 remove :pre
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -90,8 +90,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/bond_table.html b/doc/bond_table.html
index 13ed4a9295..d79c4b4091 100644
--- a/doc/bond_table.html
+++ b/doc/bond_table.html
@@ -122,12 +122,12 @@ one that matches the specified keyword.
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -139,8 +139,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/bond_table.txt b/doc/bond_table.txt
index cc70596bc3..be9060d595 100644
--- a/doc/bond_table.txt
+++ b/doc/bond_table.txt
@@ -118,12 +118,12 @@ one that matches the specified keyword.
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -135,8 +135,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/compute_pe.html b/doc/compute_pe.html
index 96a25eb42a..97e1fe278a 100644
--- a/doc/compute_pe.html
+++ b/doc/compute_pe.html
@@ -61,9 +61,9 @@ LAMMPS starts up, as if this command were in the input script:
Styles with a cuda suffix are functionally the same as the
corresponding style without the suffix. They have been optimized to
run faster, depending on your available hardware, as discussed in
-this section of the manual. The accelerated
-styles take the same arguments and should produce the same results,
-except for round-off and precision issues.
+Section_accelerate of the manual. The
+accelerated styles take the same arguments and should produce the same
+results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA package. They are
only enabled if LAMMPS was built with that package. See the Making
@@ -74,8 +74,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/compute_pe.txt b/doc/compute_pe.txt
index 46d54268e1..5b0e9f29d0 100644
--- a/doc/compute_pe.txt
+++ b/doc/compute_pe.txt
@@ -57,9 +57,9 @@ See the "thermo_style" command for more details.
Styles with a {cuda} suffix are functionally the same as the
corresponding style without the suffix. They have been optimized to
run faster, depending on your available hardware, as discussed in
-"this section"_Section_accelerate.html of the manual. The accelerated
-styles take the same arguments and should produce the same results,
-except for round-off and precision issues.
+"Section_accelerate"_Section_accelerate.html of the manual. The
+accelerated styles take the same arguments and should produce the same
+results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA package. They are
only enabled if LAMMPS was built with that package. See the "Making
@@ -70,8 +70,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/compute_pressure.html b/doc/compute_pressure.html
index 53cc3132cb..f5e729b519 100644
--- a/doc/compute_pressure.html
+++ b/doc/compute_pressure.html
@@ -91,9 +91,9 @@ LAMMPS starts up, as if this command were in the input script:
Styles with a cuda suffix are functionally the same as the
corresponding style without the suffix. They have been optimized to
run faster, depending on your available hardware, as discussed in
-this section of the manual. The accelerated
-styles take the same arguments and should produce the same results,
-except for round-off and precision issues.
+Section_accelerate of the manual. The
+accelerated styles take the same arguments and should produce the same
+results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA package. They are
only enabled if LAMMPS was built with that package. See the Making
@@ -104,8 +104,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/compute_pressure.txt b/doc/compute_pressure.txt
index 28d77dd17d..0e42709481 100644
--- a/doc/compute_pressure.txt
+++ b/doc/compute_pressure.txt
@@ -87,9 +87,9 @@ where "thermo_temp" is the ID of a similarly defined compute of style
Styles with a {cuda} suffix are functionally the same as the
corresponding style without the suffix. They have been optimized to
run faster, depending on your available hardware, as discussed in
-"this section"_Section_accelerate.html of the manual. The accelerated
-styles take the same arguments and should produce the same results,
-except for round-off and precision issues.
+"Section_accelerate"_Section_accelerate.html of the manual. The
+accelerated styles take the same arguments and should produce the same
+results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA package. They are
only enabled if LAMMPS was built with that package. See the "Making
@@ -100,8 +100,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/compute_temp.html b/doc/compute_temp.html
index 6005da58da..bf7a2615c7 100644
--- a/doc/compute_temp.html
+++ b/doc/compute_temp.html
@@ -71,9 +71,9 @@ thermostatting.
Styles with a cuda suffix are functionally the same as the
corresponding style without the suffix. They have been optimized to
run faster, depending on your available hardware, as discussed in
-this section of the manual. The accelerated
-styles take the same arguments and should produce the same results,
-except for round-off and precision issues.
+Section_accelerate of the manual. The
+accelerated styles take the same arguments and should produce the same
+results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA package. They are
only enabled if LAMMPS was built with that package. See the Making
@@ -84,8 +84,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/compute_temp.txt b/doc/compute_temp.txt
index 7915e86835..d31b05bd2e 100644
--- a/doc/compute_temp.txt
+++ b/doc/compute_temp.txt
@@ -67,9 +67,9 @@ thermostatting.
Styles with a {cuda} suffix are functionally the same as the
corresponding style without the suffix. They have been optimized to
run faster, depending on your available hardware, as discussed in
-"this section"_Section_accelerate.html of the manual. The accelerated
-styles take the same arguments and should produce the same results,
-except for round-off and precision issues.
+"Section_accelerate"_Section_accelerate.html of the manual. The
+accelerated styles take the same arguments and should produce the same
+results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA package. They are
only enabled if LAMMPS was built with that package. See the "Making
@@ -80,8 +80,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/compute_temp_partial.html b/doc/compute_temp_partial.html
index c076a2be52..c6b841c2b0 100644
--- a/doc/compute_temp_partial.html
+++ b/doc/compute_temp_partial.html
@@ -79,9 +79,9 @@ thermostatting.
Styles with a cuda suffix are functionally the same as the
corresponding style without the suffix. They have been optimized to
run faster, depending on your available hardware, as discussed in
-this section of the manual. The accelerated
-styles take the same arguments and should produce the same results,
-except for round-off and precision issues.
+Section_accelerate of the manual. The
+accelerated styles take the same arguments and should produce the same
+results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA package. They are
only enabled if LAMMPS was built with that package. See the Making
@@ -92,8 +92,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/compute_temp_partial.txt b/doc/compute_temp_partial.txt
index ab5d42f9d0..525ab972a9 100644
--- a/doc/compute_temp_partial.txt
+++ b/doc/compute_temp_partial.txt
@@ -75,9 +75,9 @@ thermostatting.
Styles with a {cuda} suffix are functionally the same as the
corresponding style without the suffix. They have been optimized to
run faster, depending on your available hardware, as discussed in
-"this section"_Section_accelerate.html of the manual. The accelerated
-styles take the same arguments and should produce the same results,
-except for round-off and precision issues.
+"Section_accelerate"_Section_accelerate.html of the manual. The
+accelerated styles take the same arguments and should produce the same
+results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA package. They are
only enabled if LAMMPS was built with that package. See the "Making
@@ -88,8 +88,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/dihedral_charmm.html b/doc/dihedral_charmm.html
index 6c3104c6e3..37f910922f 100644
--- a/doc/dihedral_charmm.html
+++ b/doc/dihedral_charmm.html
@@ -71,12 +71,12 @@ need any 1-4 information.
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -88,8 +88,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/dihedral_charmm.txt b/doc/dihedral_charmm.txt
index c0b959ffb5..7129673581 100644
--- a/doc/dihedral_charmm.txt
+++ b/doc/dihedral_charmm.txt
@@ -67,12 +67,12 @@ need any 1-4 information.
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -84,8 +84,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/dihedral_class2.html b/doc/dihedral_class2.html
index 79e7b47d92..dcc8e8343b 100644
--- a/doc/dihedral_class2.html
+++ b/doc/dihedral_class2.html
@@ -141,12 +141,12 @@ listed under a "BondBond13 Coeffs" heading and you must leave out the
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -158,8 +158,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/dihedral_class2.txt b/doc/dihedral_class2.txt
index ab60aa3812..391facf945 100644
--- a/doc/dihedral_class2.txt
+++ b/doc/dihedral_class2.txt
@@ -137,12 +137,12 @@ r3 (distance) :ul
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -154,8 +154,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/dihedral_cosine_shift_exp.html b/doc/dihedral_cosine_shift_exp.html
index c6ab2cae79..f0270280aa 100644
--- a/doc/dihedral_cosine_shift_exp.html
+++ b/doc/dihedral_cosine_shift_exp.html
@@ -53,12 +53,12 @@ commands:
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -70,8 +70,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/dihedral_cosine_shift_exp.txt b/doc/dihedral_cosine_shift_exp.txt
index d1e1c8223b..1807d1c7e0 100644
--- a/doc/dihedral_cosine_shift_exp.txt
+++ b/doc/dihedral_cosine_shift_exp.txt
@@ -49,12 +49,12 @@ A (real number) :ul
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -66,8 +66,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/dihedral_harmonic.html b/doc/dihedral_harmonic.html
index d8c3a73f69..ad361cfce4 100644
--- a/doc/dihedral_harmonic.html
+++ b/doc/dihedral_harmonic.html
@@ -39,12 +39,12 @@ or read_restart commands:
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -56,8 +56,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/dihedral_harmonic.txt b/doc/dihedral_harmonic.txt
index a076931a0a..8eefbc02b3 100644
--- a/doc/dihedral_harmonic.txt
+++ b/doc/dihedral_harmonic.txt
@@ -35,12 +35,12 @@ n (integer >= 0) :ul
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -52,8 +52,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/dihedral_helix.html b/doc/dihedral_helix.html
index 86b3728339..f95b796e10 100644
--- a/doc/dihedral_helix.html
+++ b/doc/dihedral_helix.html
@@ -47,12 +47,12 @@ or read_restart commands:
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -64,8 +64,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/dihedral_helix.txt b/doc/dihedral_helix.txt
index 8792c10767..7706c04c25 100644
--- a/doc/dihedral_helix.txt
+++ b/doc/dihedral_helix.txt
@@ -43,12 +43,12 @@ C (energy) :ul
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -60,8 +60,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/dihedral_multi_harmonic.html b/doc/dihedral_multi_harmonic.html
index 10601f3362..4872c29348 100644
--- a/doc/dihedral_multi_harmonic.html
+++ b/doc/dihedral_multi_harmonic.html
@@ -41,12 +41,12 @@ or read_restart commands:
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -58,8 +58,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/dihedral_multi_harmonic.txt b/doc/dihedral_multi_harmonic.txt
index 505857fe81..97b87546ad 100644
--- a/doc/dihedral_multi_harmonic.txt
+++ b/doc/dihedral_multi_harmonic.txt
@@ -37,12 +37,12 @@ A5 (energy) :ul
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -54,8 +54,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/dihedral_opls.html b/doc/dihedral_opls.html
index e0656dd837..6bedadc0cf 100644
--- a/doc/dihedral_opls.html
+++ b/doc/dihedral_opls.html
@@ -45,12 +45,12 @@ or read_restart commands:
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -62,8 +62,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/dihedral_opls.txt b/doc/dihedral_opls.txt
index c43e7a279e..d12ced983e 100644
--- a/doc/dihedral_opls.txt
+++ b/doc/dihedral_opls.txt
@@ -41,12 +41,12 @@ K4 (energy) :ul
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -58,8 +58,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/dimension.html b/doc/dimension.html
index 5a0866c056..c4ebeccf73 100644
--- a/doc/dimension.html
+++ b/doc/dimension.html
@@ -29,8 +29,8 @@ prior to setting up a simulation box via the
create_box or read_data commands.
Restart files also store this setting.
-See the discussion in this section for additional
-instructions on how to run 2d simulations.
+
See the discussion in Section_howto for
+additional instructions on how to run 2d simulations.
IMPORTANT NOTE: Some models in LAMMPS treat particles as extended
spheres or ellipsoids, as opposed to point particles. In 2d, the
diff --git a/doc/dimension.txt b/doc/dimension.txt
index 00e5bcfeb4..e8e843c802 100644
--- a/doc/dimension.txt
+++ b/doc/dimension.txt
@@ -26,8 +26,8 @@ prior to setting up a simulation box via the
"create_box"_create_box.html or "read_data"_read_data.html commands.
Restart files also store this setting.
-See the discussion in "this section"_Section_howto.html for additional
-instructions on how to run 2d simulations.
+See the discussion in "Section_howto"_Section_howto.html for
+additional instructions on how to run 2d simulations.
IMPORTANT NOTE: Some models in LAMMPS treat particles as extended
spheres or ellipsoids, as opposed to point particles. In 2d, the
diff --git a/doc/dump.html b/doc/dump.html
index 23bd26c179..9b3d6264a1 100644
--- a/doc/dump.html
+++ b/doc/dump.html
@@ -498,7 +498,7 @@ invoke other computes, fixes, or variables when they are evaluated, so
this is a very general means of creating quantities to output to a
dump file.
-See this section of the manual for information
+
See Section_modify of the manual for information
on how to add new compute and fix styles to LAMMPS to calculate
per-atom quantities which could then be output into dump files.
diff --git a/doc/dump.txt b/doc/dump.txt
index 56df5f44a1..8f4e6c5698 100644
--- a/doc/dump.txt
+++ b/doc/dump.txt
@@ -487,7 +487,7 @@ invoke other computes, fixes, or variables when they are evaluated, so
this is a very general means of creating quantities to output to a
dump file.
-See "this section"_Section_modify.html of the manual for information
+See "Section_modify"_Section_modify.html of the manual for information
on how to add new compute and fix styles to LAMMPS to calculate
per-atom quantities which could then be output into dump files.
diff --git a/doc/dump_image.html b/doc/dump_image.html
index 65eda7079d..1e07899d3c 100644
--- a/doc/dump_image.html
+++ b/doc/dump_image.html
@@ -414,7 +414,7 @@ obviously play movie files directly.
-See this section of the manual for information
+
See Section_modify of the manual for information
on how to add new compute and fix styles to LAMMPS to calculate
per-atom quantities which could then be output into dump files.
diff --git a/doc/dump_image.txt b/doc/dump_image.txt
index 08a74c6de4..6637f0b466 100644
--- a/doc/dump_image.txt
+++ b/doc/dump_image.txt
@@ -400,7 +400,7 @@ obviously play movie files directly. :ule,l
:line
-See "this section"_Section_modify.html of the manual for information
+See "Section_modify"_Section_modify.html of the manual for information
on how to add new compute and fix styles to LAMMPS to calculate
per-atom quantities which could then be output into dump files.
diff --git a/doc/fix_addforce.html b/doc/fix_addforce.html
index 05b679d66b..60ead37035 100644
--- a/doc/fix_addforce.html
+++ b/doc/fix_addforce.html
@@ -112,9 +112,9 @@ converge properly.
Styles with a cuda suffix are functionally the same as the
corresponding style without the suffix. They have been optimized to
run faster, depending on your available hardware, as discussed in
-this section of the manual. The accelerated
-styles take the same arguments and should produce the same results,
-except for round-off and precision issues.
+Section_accelerate of the manual. The
+accelerated styles take the same arguments and should produce the same
+results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA package. They are
only enabled if LAMMPS was built with that package. See the Making
@@ -125,8 +125,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/fix_addforce.txt b/doc/fix_addforce.txt
index b20a696071..bd2a159133 100644
--- a/doc/fix_addforce.txt
+++ b/doc/fix_addforce.txt
@@ -101,9 +101,9 @@ converge properly.
Styles with a {cuda} suffix are functionally the same as the
corresponding style without the suffix. They have been optimized to
run faster, depending on your available hardware, as discussed in
-"this section"_Section_accelerate.html of the manual. The accelerated
-styles take the same arguments and should produce the same results,
-except for round-off and precision issues.
+"Section_accelerate"_Section_accelerate.html of the manual. The
+accelerated styles take the same arguments and should produce the same
+results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA package. They are
only enabled if LAMMPS was built with that package. See the "Making
@@ -114,8 +114,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/fix_aveforce.html b/doc/fix_aveforce.html
index 3aae86bb54..99052a01e2 100644
--- a/doc/fix_aveforce.html
+++ b/doc/fix_aveforce.html
@@ -78,9 +78,9 @@ to it.
Styles with a cuda suffix are functionally the same as the
corresponding style without the suffix. They have been optimized to
run faster, depending on your available hardware, as discussed in
-this section of the manual. The accelerated
-styles take the same arguments and should produce the same results,
-except for round-off and precision issues.
+Section_accelerate of the manual. The
+accelerated styles take the same arguments and should produce the same
+results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA package. They are
only enabled if LAMMPS was built with that package. See the Making
@@ -91,8 +91,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/fix_aveforce.txt b/doc/fix_aveforce.txt
index bae11d47d4..9759fe4550 100644
--- a/doc/fix_aveforce.txt
+++ b/doc/fix_aveforce.txt
@@ -67,9 +67,9 @@ to it.
Styles with a {cuda} suffix are functionally the same as the
corresponding style without the suffix. They have been optimized to
run faster, depending on your available hardware, as discussed in
-"this section"_Section_accelerate.html of the manual. The accelerated
-styles take the same arguments and should produce the same results,
-except for round-off and precision issues.
+"Section_accelerate"_Section_accelerate.html of the manual. The
+accelerated styles take the same arguments and should produce the same
+results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA package. They are
only enabled if LAMMPS was built with that package. See the "Making
@@ -80,8 +80,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/fix_enforce2d.html b/doc/fix_enforce2d.html
index cad153683e..3bf7b56e4f 100644
--- a/doc/fix_enforce2d.html
+++ b/doc/fix_enforce2d.html
@@ -35,9 +35,9 @@ not move from their initial z coordinate.
Styles with a cuda suffix are functionally the same as the
corresponding style without the suffix. They have been optimized to
run faster, depending on your available hardware, as discussed in
-this section of the manual. The accelerated
-styles take the same arguments and should produce the same results,
-except for round-off and precision issues.
+Section_accelerate of the manual. The
+accelerated styles take the same arguments and should produce the same
+results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA package. They are
only enabled if LAMMPS was built with that package. See the Making
@@ -48,8 +48,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/fix_enforce2d.txt b/doc/fix_enforce2d.txt
index 20bcf8f3c7..46000e9624 100644
--- a/doc/fix_enforce2d.txt
+++ b/doc/fix_enforce2d.txt
@@ -31,9 +31,9 @@ not move from their initial z coordinate.
Styles with a {cuda} suffix are functionally the same as the
corresponding style without the suffix. They have been optimized to
run faster, depending on your available hardware, as discussed in
-"this section"_Section_accelerate.html of the manual. The accelerated
-styles take the same arguments and should produce the same results,
-except for round-off and precision issues.
+"Section_accelerate"_Section_accelerate.html of the manual. The
+accelerated styles take the same arguments and should produce the same
+results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA package. They are
only enabled if LAMMPS was built with that package. See the "Making
@@ -44,8 +44,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/fix_freeze.html b/doc/fix_freeze.html
index 762460f39d..ea95a1fdb3 100644
--- a/doc/fix_freeze.html
+++ b/doc/fix_freeze.html
@@ -37,9 +37,9 @@ particles appropriately, as if the frozen particle has infinite mass.
Styles with a cuda suffix are functionally the same as the
corresponding style without the suffix. They have been optimized to
run faster, depending on your available hardware, as discussed in
-this section of the manual. The accelerated
-styles take the same arguments and should produce the same results,
-except for round-off and precision issues.
+Section_accelerate of the manual. The
+accelerated styles take the same arguments and should produce the same
+results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA package. They are
only enabled if LAMMPS was built with that package. See the Making
@@ -50,8 +50,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/fix_freeze.txt b/doc/fix_freeze.txt
index ac89b18190..05ad194799 100644
--- a/doc/fix_freeze.txt
+++ b/doc/fix_freeze.txt
@@ -33,9 +33,9 @@ particles appropriately, as if the frozen particle has infinite mass.
Styles with a {cuda} suffix are functionally the same as the
corresponding style without the suffix. They have been optimized to
run faster, depending on your available hardware, as discussed in
-"this section"_Section_accelerate.html of the manual. The accelerated
-styles take the same arguments and should produce the same results,
-except for round-off and precision issues.
+"Section_accelerate"_Section_accelerate.html of the manual. The
+accelerated styles take the same arguments and should produce the same
+results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA package. They are
only enabled if LAMMPS was built with that package. See the "Making
@@ -46,8 +46,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/fix_gravity.html b/doc/fix_gravity.html
index fbc2fce7f3..b26083d2d3 100644
--- a/doc/fix_gravity.html
+++ b/doc/fix_gravity.html
@@ -91,12 +91,12 @@ by (x,y,z). For 2d systems, the z component is ignored.
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -108,8 +108,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/fix_gravity.txt b/doc/fix_gravity.txt
index bad5edc997..45812ffe45 100644
--- a/doc/fix_gravity.txt
+++ b/doc/fix_gravity.txt
@@ -81,12 +81,12 @@ by (x,y,z). For 2d systems, the z component is ignored.
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -98,8 +98,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/fix_nh.html b/doc/fix_nh.html
index 6bf376ba76..845d2cd0a2 100644
--- a/doc/fix_nh.html
+++ b/doc/fix_nh.html
@@ -376,9 +376,9 @@ thermal degrees of freedom, and the bias is added back in.
Styles with a cuda suffix are functionally the same as the
corresponding style without the suffix. They have been optimized to
run faster, depending on your available hardware, as discussed in
-this section of the manual. The accelerated
-styles take the same arguments and should produce the same results,
-except for round-off and precision issues.
+Section_accelerate of the manual. The
+accelerated styles take the same arguments and should produce the same
+results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA package. They are
only enabled if LAMMPS was built with that package. See the Making
@@ -389,8 +389,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/fix_nh.txt b/doc/fix_nh.txt
index f7dd7f2561..749097a8cc 100644
--- a/doc/fix_nh.txt
+++ b/doc/fix_nh.txt
@@ -366,9 +366,9 @@ thermal degrees of freedom, and the bias is added back in.
Styles with a {cuda} suffix are functionally the same as the
corresponding style without the suffix. They have been optimized to
run faster, depending on your available hardware, as discussed in
-"this section"_Section_accelerate.html of the manual. The accelerated
-styles take the same arguments and should produce the same results,
-except for round-off and precision issues.
+"Section_accelerate"_Section_accelerate.html of the manual. The
+accelerated styles take the same arguments and should produce the same
+results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA package. They are
only enabled if LAMMPS was built with that package. See the "Making
@@ -379,8 +379,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/fix_nve.html b/doc/fix_nve.html
index e08b86dcde..2a544abd02 100644
--- a/doc/fix_nve.html
+++ b/doc/fix_nve.html
@@ -36,9 +36,9 @@ ensemble.
Styles with a cuda suffix are functionally the same as the
corresponding style without the suffix. They have been optimized to
run faster, depending on your available hardware, as discussed in
-this section of the manual. The accelerated
-styles take the same arguments and should produce the same results,
-except for round-off and precision issues.
+Section_accelerate of the manual. The
+accelerated styles take the same arguments and should produce the same
+results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA package. They are
only enabled if LAMMPS was built with that package. See the Making
@@ -49,8 +49,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/fix_nve.txt b/doc/fix_nve.txt
index fbc23c25e4..3558efda0d 100644
--- a/doc/fix_nve.txt
+++ b/doc/fix_nve.txt
@@ -32,9 +32,9 @@ ensemble.
Styles with a {cuda} suffix are functionally the same as the
corresponding style without the suffix. They have been optimized to
run faster, depending on your available hardware, as discussed in
-"this section"_Section_accelerate.html of the manual. The accelerated
-styles take the same arguments and should produce the same results,
-except for round-off and precision issues.
+"Section_accelerate"_Section_accelerate.html of the manual. The
+accelerated styles take the same arguments and should produce the same
+results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA package. They are
only enabled if LAMMPS was built with that package. See the "Making
@@ -45,8 +45,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/fix_nve_sphere.html b/doc/fix_nve_sphere.html
index f2f5678cd7..2702bcbfb3 100644
--- a/doc/fix_nve_sphere.html
+++ b/doc/fix_nve_sphere.html
@@ -53,12 +53,12 @@ where a dipole moment is assigned to particles via use of the
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -70,8 +70,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/fix_nve_sphere.txt b/doc/fix_nve_sphere.txt
index 3c5864d3f4..ebaeabd40b 100755
--- a/doc/fix_nve_sphere.txt
+++ b/doc/fix_nve_sphere.txt
@@ -44,12 +44,12 @@ where a dipole moment is assigned to particles via use of the
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -61,8 +61,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/fix_qeq_comb.html b/doc/fix_qeq_comb.html
index c66b49dc4d..984b6bd685 100644
--- a/doc/fix_qeq_comb.html
+++ b/doc/fix_qeq_comb.html
@@ -70,12 +70,12 @@ equilibration calculation is written to the specifed file.
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -87,8 +87,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/fix_qeq_comb.txt b/doc/fix_qeq_comb.txt
index 3fbb9dc7b9..5cce65180b 100644
--- a/doc/fix_qeq_comb.txt
+++ b/doc/fix_qeq_comb.txt
@@ -59,12 +59,12 @@ equilibration calculation is written to the specifed file.
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -76,8 +76,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/fix_setforce.html b/doc/fix_setforce.html
index 6e713254d4..2ac1db341d 100644
--- a/doc/fix_setforce.html
+++ b/doc/fix_setforce.html
@@ -79,9 +79,9 @@ to it.
Styles with a cuda suffix are functionally the same as the
corresponding style without the suffix. They have been optimized to
run faster, depending on your available hardware, as discussed in
-this section of the manual. The accelerated
-styles take the same arguments and should produce the same results,
-except for round-off and precision issues.
+Section_accelerate of the manual. The
+accelerated styles take the same arguments and should produce the same
+results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA package. They are
only enabled if LAMMPS was built with that package. See the Making
@@ -92,8 +92,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/fix_setforce.txt b/doc/fix_setforce.txt
index 90404f0324..c215e3ed25 100644
--- a/doc/fix_setforce.txt
+++ b/doc/fix_setforce.txt
@@ -68,9 +68,9 @@ to it.
Styles with a {cuda} suffix are functionally the same as the
corresponding style without the suffix. They have been optimized to
run faster, depending on your available hardware, as discussed in
-"this section"_Section_accelerate.html of the manual. The accelerated
-styles take the same arguments and should produce the same results,
-except for round-off and precision issues.
+"Section_accelerate"_Section_accelerate.html of the manual. The
+accelerated styles take the same arguments and should produce the same
+results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA package. They are
only enabled if LAMMPS was built with that package. See the "Making
@@ -81,8 +81,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/fix_shake.html b/doc/fix_shake.html
index a5aad277aa..1834d16bd8 100644
--- a/doc/fix_shake.html
+++ b/doc/fix_shake.html
@@ -93,9 +93,9 @@ for.
Styles with a cuda suffix are functionally the same as the
corresponding style without the suffix. They have been optimized to
run faster, depending on your available hardware, as discussed in
-this section of the manual. The accelerated
-styles take the same arguments and should produce the same results,
-except for round-off and precision issues.
+Section_accelerate of the manual. The
+accelerated styles take the same arguments and should produce the same
+results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA package. They are
only enabled if LAMMPS was built with that package. See the Making
@@ -106,8 +106,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/fix_shake.txt b/doc/fix_shake.txt
index dee3239bd8..ed0eb85fdc 100644
--- a/doc/fix_shake.txt
+++ b/doc/fix_shake.txt
@@ -81,9 +81,9 @@ for.
Styles with a {cuda} suffix are functionally the same as the
corresponding style without the suffix. They have been optimized to
run faster, depending on your available hardware, as discussed in
-"this section"_Section_accelerate.html of the manual. The accelerated
-styles take the same arguments and should produce the same results,
-except for round-off and precision issues.
+"Section_accelerate"_Section_accelerate.html of the manual. The
+accelerated styles take the same arguments and should produce the same
+results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA package. They are
only enabled if LAMMPS was built with that package. See the "Making
@@ -94,8 +94,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/fix_temp_berendsen.html b/doc/fix_temp_berendsen.html
index 0762f66eea..494311d17a 100644
--- a/doc/fix_temp_berendsen.html
+++ b/doc/fix_temp_berendsen.html
@@ -100,9 +100,9 @@ thermal degrees of freedom, and the bias is added back in.
Styles with a cuda suffix are functionally the same as the
corresponding style without the suffix. They have been optimized to
run faster, depending on your available hardware, as discussed in
-this section of the manual. The accelerated
-styles take the same arguments and should produce the same results,
-except for round-off and precision issues.
+Section_accelerate of the manual. The
+accelerated styles take the same arguments and should produce the same
+results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA package. They are
only enabled if LAMMPS was built with that package. See the Making
@@ -113,8 +113,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/fix_temp_berendsen.txt b/doc/fix_temp_berendsen.txt
index 8dd9620418..4ac7e2b6e4 100644
--- a/doc/fix_temp_berendsen.txt
+++ b/doc/fix_temp_berendsen.txt
@@ -96,9 +96,9 @@ thermal degrees of freedom, and the bias is added back in.
Styles with a {cuda} suffix are functionally the same as the
corresponding style without the suffix. They have been optimized to
run faster, depending on your available hardware, as discussed in
-"this section"_Section_accelerate.html of the manual. The accelerated
-styles take the same arguments and should produce the same results,
-except for round-off and precision issues.
+"Section_accelerate"_Section_accelerate.html of the manual. The
+accelerated styles take the same arguments and should produce the same
+results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA package. They are
only enabled if LAMMPS was built with that package. See the "Making
@@ -109,8 +109,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/fix_temp_rescale.html b/doc/fix_temp_rescale.html
index 81273ed4e3..34fd4ea235 100644
--- a/doc/fix_temp_rescale.html
+++ b/doc/fix_temp_rescale.html
@@ -109,9 +109,9 @@ thermal degrees of freedom, and the bias is added back in.
Styles with a cuda suffix are functionally the same as the
corresponding style without the suffix. They have been optimized to
run faster, depending on your available hardware, as discussed in
-this section of the manual. The accelerated
-styles take the same arguments and should produce the same results,
-except for round-off and precision issues.
+Section_accelerate of the manual. The
+accelerated styles take the same arguments and should produce the same
+results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA package. They are
only enabled if LAMMPS was built with that package. See the Making
@@ -122,8 +122,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/fix_temp_rescale.txt b/doc/fix_temp_rescale.txt
index 5fbe99e5b3..0215f837f4 100644
--- a/doc/fix_temp_rescale.txt
+++ b/doc/fix_temp_rescale.txt
@@ -104,9 +104,9 @@ thermal degrees of freedom, and the bias is added back in.
Styles with a {cuda} suffix are functionally the same as the
corresponding style without the suffix. They have been optimized to
run faster, depending on your available hardware, as discussed in
-"this section"_Section_accelerate.html of the manual. The accelerated
-styles take the same arguments and should produce the same results,
-except for round-off and precision issues.
+"Section_accelerate"_Section_accelerate.html of the manual. The
+accelerated styles take the same arguments and should produce the same
+results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA package. They are
only enabled if LAMMPS was built with that package. See the "Making
@@ -117,8 +117,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/fix_viscous.html b/doc/fix_viscous.html
index fe03b98672..94a9c6980a 100644
--- a/doc/fix_viscous.html
+++ b/doc/fix_viscous.html
@@ -87,9 +87,9 @@ so that it can more easily be used as a thermostat.
Styles with a cuda suffix are functionally the same as the
corresponding style without the suffix. They have been optimized to
run faster, depending on your available hardware, as discussed in
-this section of the manual. The accelerated
-styles take the same arguments and should produce the same results,
-except for round-off and precision issues.
+Section_accelerate of the manual. The
+accelerated styles take the same arguments and should produce the same
+results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA package. They are
only enabled if LAMMPS was built with that package. See the Making
@@ -100,8 +100,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/fix_viscous.txt b/doc/fix_viscous.txt
index bfd26b726b..2e1b87837b 100644
--- a/doc/fix_viscous.txt
+++ b/doc/fix_viscous.txt
@@ -78,9 +78,9 @@ so that it can more easily be used as a thermostat.
Styles with a {cuda} suffix are functionally the same as the
corresponding style without the suffix. They have been optimized to
run faster, depending on your available hardware, as discussed in
-"this section"_Section_accelerate.html of the manual. The accelerated
-styles take the same arguments and should produce the same results,
-except for round-off and precision issues.
+"Section_accelerate"_Section_accelerate.html of the manual. The
+accelerated styles take the same arguments and should produce the same
+results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA package. They are
only enabled if LAMMPS was built with that package. See the "Making
@@ -91,8 +91,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/improper_class2.html b/doc/improper_class2.html
index 437bedf9e8..03cccdf6a3 100644
--- a/doc/improper_class2.html
+++ b/doc/improper_class2.html
@@ -87,12 +87,12 @@ radians internally; hence the units of M are in energy/radian^2.
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -104,8 +104,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/improper_class2.txt b/doc/improper_class2.txt
index 52f93f924d..f6d66b9c7f 100644
--- a/doc/improper_class2.txt
+++ b/doc/improper_class2.txt
@@ -83,12 +83,12 @@ radians internally; hence the units of M are in energy/radian^2.
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -100,8 +100,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/improper_cvff.html b/doc/improper_cvff.html
index 894c2979ef..211b33f1d5 100644
--- a/doc/improper_cvff.html
+++ b/doc/improper_cvff.html
@@ -57,12 +57,12 @@ commands:
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -74,8 +74,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/improper_cvff.txt b/doc/improper_cvff.txt
index 7bff075847..94736d3cd2 100644
--- a/doc/improper_cvff.txt
+++ b/doc/improper_cvff.txt
@@ -53,12 +53,12 @@ n (0,1,2,3,4,6) :ul
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -70,8 +70,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/improper_harmonic.html b/doc/improper_harmonic.html
index d62ca4a8a7..075a1c1416 100644
--- a/doc/improper_harmonic.html
+++ b/doc/improper_harmonic.html
@@ -57,12 +57,12 @@ internally; hence the units of K are in energy/radian^2.
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -74,8 +74,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/improper_harmonic.txt b/doc/improper_harmonic.txt
index 0d4317130c..9a03129909 100644
--- a/doc/improper_harmonic.txt
+++ b/doc/improper_harmonic.txt
@@ -53,12 +53,12 @@ internally; hence the units of K are in energy/radian^2.
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -70,8 +70,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/improper_umbrella.html b/doc/improper_umbrella.html
index 84cdbc8439..8c74bad45c 100644
--- a/doc/improper_umbrella.html
+++ b/doc/improper_umbrella.html
@@ -52,12 +52,12 @@ commands:
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -69,8 +69,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/improper_umbrella.txt b/doc/improper_umbrella.txt
index 7ec8cfb1e0..d5e178ff94 100644
--- a/doc/improper_umbrella.txt
+++ b/doc/improper_umbrella.txt
@@ -48,12 +48,12 @@ omega0 (degrees) :ul
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -65,8 +65,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/kspace_style.html b/doc/kspace_style.html
index 7e54d18de6..5d6c200f5d 100644
--- a/doc/kspace_style.html
+++ b/doc/kspace_style.html
@@ -129,11 +129,11 @@ options of the K-space solvers that can be set.
-Styles with a cuda, gpu, omp, or opt suffix are
-functionally the same as the corresponding style without the suffix.
-They have been optimized to run faster, depending on your available
-hardware, as discussed in this section of
-the manual. The accelerated styles take the same arguments and should
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
produce the same results, except for round-off and precision issues.
More specifically, the pppm/gpu style performs charge assignment and
@@ -151,8 +151,8 @@ OPT packages respectively. They are only enabled if LAMMPS was built
with those packages. See the Making LAMMPS
section for more info.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
Restrictions:
diff --git a/doc/kspace_style.txt b/doc/kspace_style.txt
index b6d70f66d4..d13dbf68d9 100644
--- a/doc/kspace_style.txt
+++ b/doc/kspace_style.txt
@@ -124,11 +124,11 @@ options of the K-space solvers that can be set.
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are
-functionally the same as the corresponding style without the suffix.
-They have been optimized to run faster, depending on your available
-hardware, as discussed in "this section"_Section_accelerate.html of
-the manual. The accelerated styles take the same arguments and should
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
produce the same results, except for round-off and precision issues.
More specifically, the {pppm/gpu} style performs charge assignment and
@@ -146,8 +146,8 @@ OPT packages respectively. They are only enabled if LAMMPS was built
with those packages. See the "Making LAMMPS"_Section_start.html#start_3
section for more info.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
[Restrictions:]
diff --git a/doc/package.html b/doc/package.html
index 1d7254e15b..124ae47329 100644
--- a/doc/package.html
+++ b/doc/package.html
@@ -74,9 +74,9 @@ to use the package command if you want to change the defaults.
required as defaults are assigned internally. You only need to use
the package command if you want to change the defaults.
-See this section of the manual for more
-details about using these various packages for accelerating LAMMPS
-calculations.
+
See Section_accelerate of the manual for
+more details about using these various packages for accelerating
+LAMMPS calculations.
diff --git a/doc/package.txt b/doc/package.txt
index e561100a30..c8b30217a4 100644
--- a/doc/package.txt
+++ b/doc/package.txt
@@ -68,9 +68,9 @@ To use the accelerate USER-CUDA styles, the package command is not
required as defaults are assigned internally. You only need to use
the package command if you want to change the defaults.
-See "this section"_Section_accelerate.html of the manual for more
-details about using these various packages for accelerating LAMMPS
-calculations.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more details about using these various packages for accelerating
+LAMMPS calculations.
:line
diff --git a/doc/pair_adp.html b/doc/pair_adp.html
index 34bf494229..230d469cd1 100644
--- a/doc/pair_adp.html
+++ b/doc/pair_adp.html
@@ -120,12 +120,12 @@ the u(r), the w(r) arrays are listed.
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -137,8 +137,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/pair_adp.txt b/doc/pair_adp.txt
index 4eef1d675e..4909d738b4 100644
--- a/doc/pair_adp.txt
+++ b/doc/pair_adp.txt
@@ -116,12 +116,12 @@ the u(r), the w(r) arrays are listed.
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -133,8 +133,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/pair_airebo.html b/doc/pair_airebo.html
index 282e1affbf..8bc7126e04 100644
--- a/doc/pair_airebo.html
+++ b/doc/pair_airebo.html
@@ -124,12 +124,12 @@ it was fit, so modifying the file should be done cautiously.
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -141,8 +141,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/pair_airebo.txt b/doc/pair_airebo.txt
index 71c7ea071a..8239d42a36 100644
--- a/doc/pair_airebo.txt
+++ b/doc/pair_airebo.txt
@@ -118,12 +118,12 @@ it was fit, so modifying the file should be done cautiously.
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -135,8 +135,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/pair_born.html b/doc/pair_born.html
index 6517851b7d..6d5ad8be7f 100644
--- a/doc/pair_born.html
+++ b/doc/pair_born.html
@@ -112,12 +112,12 @@ same global Coulombic cutoff specified in the pair_style command.
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -129,8 +129,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/pair_born.txt b/doc/pair_born.txt
index fcfeffdf03..99b0a56c20 100644
--- a/doc/pair_born.txt
+++ b/doc/pair_born.txt
@@ -104,12 +104,12 @@ same global Coulombic cutoff specified in the pair_style command.
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -121,8 +121,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/pair_buck.html b/doc/pair_buck.html
index a7b8c76aac..8c0d4f27f6 100644
--- a/doc/pair_buck.html
+++ b/doc/pair_buck.html
@@ -116,12 +116,12 @@ pair_style command.
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -133,8 +133,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/pair_buck.txt b/doc/pair_buck.txt
index 1f875f9ac4..94e42ac20f 100644
--- a/doc/pair_buck.txt
+++ b/doc/pair_buck.txt
@@ -104,12 +104,12 @@ pair_style command.
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -121,8 +121,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/pair_buck_coul.html b/doc/pair_buck_coul.html
index 149fe36e3d..863850dbc3 100644
--- a/doc/pair_buck_coul.html
+++ b/doc/pair_buck_coul.html
@@ -105,12 +105,12 @@ global Coulombic cutoff is allowed.
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -122,8 +122,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/pair_buck_coul.txt b/doc/pair_buck_coul.txt
index 4db2117094..e6eaf14ba4 100644
--- a/doc/pair_buck_coul.txt
+++ b/doc/pair_buck_coul.txt
@@ -96,12 +96,12 @@ global Coulombic cutoff is allowed.
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -113,8 +113,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/pair_charmm.html b/doc/pair_charmm.html
index 40ba0d5402..43fb29de69 100644
--- a/doc/pair_charmm.html
+++ b/doc/pair_charmm.html
@@ -131,12 +131,12 @@ the pair_style command.
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -148,8 +148,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/pair_charmm.txt b/doc/pair_charmm.txt
index e7cf050548..bafeed18d6 100644
--- a/doc/pair_charmm.txt
+++ b/doc/pair_charmm.txt
@@ -116,12 +116,12 @@ the pair_style command.
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -133,8 +133,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/pair_class2.html b/doc/pair_class2.html
index b4fc597158..3afbdf6f74 100644
--- a/doc/pair_class2.html
+++ b/doc/pair_class2.html
@@ -114,12 +114,12 @@ cutoff distance.
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -131,8 +131,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/pair_class2.txt b/doc/pair_class2.txt
index 3013727493..d7b376a60c 100644
--- a/doc/pair_class2.txt
+++ b/doc/pair_class2.txt
@@ -100,12 +100,12 @@ cutoff distance.
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -117,8 +117,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/pair_colloid.html b/doc/pair_colloid.html
index a1754fd5df..b8ebae042c 100644
--- a/doc/pair_colloid.html
+++ b/doc/pair_colloid.html
@@ -127,12 +127,12 @@ commands for efficiency: neighbor multi and
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -144,8 +144,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/pair_colloid.txt b/doc/pair_colloid.txt
index 8a442ea078..b68f8d9d6f 100644
--- a/doc/pair_colloid.txt
+++ b/doc/pair_colloid.txt
@@ -123,12 +123,12 @@ commands for efficiency: "neighbor multi"_neighbor.html and
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -140,8 +140,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/pair_comb.html b/doc/pair_comb.html
index 55ec1beb1e..62c64c55ee 100644
--- a/doc/pair_comb.html
+++ b/doc/pair_comb.html
@@ -169,12 +169,12 @@ complex systems. Note that alloys and complex systems require all
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -186,8 +186,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/pair_comb.txt b/doc/pair_comb.txt
index 9ec7ede788..2ea8f2fc73 100644
--- a/doc/pair_comb.txt
+++ b/doc/pair_comb.txt
@@ -165,12 +165,12 @@ complex systems. Note that alloys and complex systems require all
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -182,8 +182,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/pair_coul.html b/doc/pair_coul.html
index f8f3fc8bbb..5aad58b337 100644
--- a/doc/pair_coul.html
+++ b/doc/pair_coul.html
@@ -123,12 +123,12 @@ Coulombic cutoff specified in the pair_style command.
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -140,8 +140,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/pair_coul.txt b/doc/pair_coul.txt
index 0551bb4903..42b0582ded 100644
--- a/doc/pair_coul.txt
+++ b/doc/pair_coul.txt
@@ -113,12 +113,12 @@ Coulombic cutoff specified in the pair_style command.
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -130,8 +130,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/pair_dipole.html b/doc/pair_dipole.html
index 0c259887b2..3f1a5ce949 100644
--- a/doc/pair_dipole.html
+++ b/doc/pair_dipole.html
@@ -124,12 +124,12 @@ type pair.
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -141,8 +141,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/pair_dipole.txt b/doc/pair_dipole.txt
index d71ffef2e0..f41ceb434d 100755
--- a/doc/pair_dipole.txt
+++ b/doc/pair_dipole.txt
@@ -116,12 +116,12 @@ type pair.
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -133,8 +133,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/pair_dpd.html b/doc/pair_dpd.html
index 40d1dae1f0..b6c46cce02 100644
--- a/doc/pair_dpd.html
+++ b/doc/pair_dpd.html
@@ -98,12 +98,12 @@ except that A is not included.
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -115,8 +115,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/pair_dpd.txt b/doc/pair_dpd.txt
index 2b60a59375..0638e753e8 100644
--- a/doc/pair_dpd.txt
+++ b/doc/pair_dpd.txt
@@ -92,12 +92,12 @@ except that A is not included.
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -109,8 +109,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/pair_eam.html b/doc/pair_eam.html
index 4f695c52e0..8237e2a521 100644
--- a/doc/pair_eam.html
+++ b/doc/pair_eam.html
@@ -373,12 +373,12 @@ are listed.
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -390,7 +390,7 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
+
See Section_accerlate of the manual for more
instructions on how to use the accelerated styles effectively.
diff --git a/doc/pair_eam.txt b/doc/pair_eam.txt
index d0b06bf07b..90883c9712 100644
--- a/doc/pair_eam.txt
+++ b/doc/pair_eam.txt
@@ -358,12 +358,12 @@ are listed.
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -375,7 +375,7 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
+See "Section_accerlate"_Section_accelerate.html of the manual for more
instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/pair_edip.html b/doc/pair_edip.html
index 1c09c8ed49..fb65ffbda5 100644
--- a/doc/pair_edip.html
+++ b/doc/pair_edip.html
@@ -102,12 +102,12 @@ the EDIP package.
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -119,8 +119,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/pair_edip.txt b/doc/pair_edip.txt
index 3494ce68f8..5fcf6e5d6c 100644
--- a/doc/pair_edip.txt
+++ b/doc/pair_edip.txt
@@ -98,12 +98,12 @@ the EDIP package.
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -115,8 +115,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/pair_eim.html b/doc/pair_eim.html
index 484cb2505c..680353a8c2 100644
--- a/doc/pair_eim.html
+++ b/doc/pair_eim.html
@@ -134,12 +134,12 @@ needs.
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -151,8 +151,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/pair_eim.txt b/doc/pair_eim.txt
index 21c0540058..0c2b5439e3 100644
--- a/doc/pair_eim.txt
+++ b/doc/pair_eim.txt
@@ -130,12 +130,12 @@ needs.
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -147,8 +147,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/pair_gauss.html b/doc/pair_gauss.html
index 64ecda5fb5..d29ba2e5c2 100644
--- a/doc/pair_gauss.html
+++ b/doc/pair_gauss.html
@@ -86,9 +86,9 @@ commands:
Styles with a cuda, gpu, omp, or opt suffix are functionally
the same as the corresponding style without the suffix. They have
been optimized to run faster, depending on your available hardware, as
-discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -100,8 +100,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/pair_gauss.txt b/doc/pair_gauss.txt
index 63462f918a..62092ce383 100644
--- a/doc/pair_gauss.txt
+++ b/doc/pair_gauss.txt
@@ -81,9 +81,9 @@ The global cutoff (r_c) specified in the pair_style command is used.
Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
the same as the corresponding style without the suffix. They have
been optimized to run faster, depending on your available hardware, as
-discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -95,8 +95,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/pair_gayberne.html b/doc/pair_gayberne.html
index ff4e001ced..de5b34c3b2 100644
--- a/doc/pair_gayberne.html
+++ b/doc/pair_gayberne.html
@@ -134,12 +134,12 @@ pair_coeff sigma to 1.0 as well.
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -151,8 +151,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/pair_gayberne.txt b/doc/pair_gayberne.txt
index 9b3363c000..a83b4f43c0 100755
--- a/doc/pair_gayberne.txt
+++ b/doc/pair_gayberne.txt
@@ -129,12 +129,12 @@ pair_coeff sigma to 1.0 as well.
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -146,8 +146,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/pair_gran.html b/doc/pair_gran.html
index f175e8f2ce..d9862cbe69 100644
--- a/doc/pair_gran.html
+++ b/doc/pair_gran.html
@@ -176,12 +176,12 @@ potential.
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -193,8 +193,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/pair_gran.txt b/doc/pair_gran.txt
index 3dfa8b3a96..d84b2ae48c 100644
--- a/doc/pair_gran.txt
+++ b/doc/pair_gran.txt
@@ -162,12 +162,12 @@ potential.
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -179,8 +179,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/pair_gromacs.html b/doc/pair_gromacs.html
index aa8051d5c0..3f84634b53 100644
--- a/doc/pair_gromacs.html
+++ b/doc/pair_gromacs.html
@@ -96,12 +96,12 @@ cutoff(s) specified in the pair_style command.
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -113,8 +113,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/pair_gromacs.txt b/doc/pair_gromacs.txt
index 5fc8ef3c4b..d276615d19 100644
--- a/doc/pair_gromacs.txt
+++ b/doc/pair_gromacs.txt
@@ -87,12 +87,12 @@ cutoff(s) specified in the pair_style command.
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -104,8 +104,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/pair_hbond_dreiding.html b/doc/pair_hbond_dreiding.html
index d412af1ef6..32c2e16e1b 100644
--- a/doc/pair_hbond_dreiding.html
+++ b/doc/pair_hbond_dreiding.html
@@ -152,12 +152,12 @@ optional parameters.
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -169,8 +169,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/pair_hbond_dreiding.txt b/doc/pair_hbond_dreiding.txt
index afc469a4a3..1b0361fc19 100644
--- a/doc/pair_hbond_dreiding.txt
+++ b/doc/pair_hbond_dreiding.txt
@@ -146,12 +146,12 @@ optional parameters.
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -163,8 +163,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/pair_hybrid.html b/doc/pair_hybrid.html
index 7fcba348da..7c729a7275 100644
--- a/doc/pair_hybrid.html
+++ b/doc/pair_hybrid.html
@@ -218,8 +218,9 @@ passed to the Tersoff potential, which means it would compute no
Styles with a cuda, gpu, omp, or opt suffix are functionally
the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual.
Since the hybrid and hybrid/overlay styles delegate computation
to the individual sub-styles, the suffix versions of the hybrid
@@ -237,8 +238,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/pair_hybrid.txt b/doc/pair_hybrid.txt
index b93fe360d8..2828fc21b0 100644
--- a/doc/pair_hybrid.txt
+++ b/doc/pair_hybrid.txt
@@ -212,8 +212,9 @@ passed to the Tersoff potential, which means it would compute no
Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual.
Since the {hybrid} and {hybrid/overlay} styles delegate computation
to the individual sub-styles, the suffix versions of the {hybrid}
@@ -231,8 +232,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/pair_line_lj.html b/doc/pair_line_lj.html
index 26e28931b5..41d106fec3 100644
--- a/doc/pair_line_lj.html
+++ b/doc/pair_line_lj.html
@@ -83,10 +83,10 @@ is used.
Styles with a cuda, gpu, omp, or opt suffix are functionally
the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -98,8 +98,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/pair_line_lj.txt b/doc/pair_line_lj.txt
index 7fc679eb46..cfa4ffe794 100644
--- a/doc/pair_line_lj.txt
+++ b/doc/pair_line_lj.txt
@@ -79,10 +79,10 @@ is used.
Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -94,8 +94,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/pair_lj.html b/doc/pair_lj.html
index 2ea060a01b..1c480cf256 100644
--- a/doc/pair_lj.html
+++ b/doc/pair_lj.html
@@ -197,12 +197,12 @@ separately and one after the other.
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -214,8 +214,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/pair_lj.txt b/doc/pair_lj.txt
index 344f9cf51c..81fc804afd 100644
--- a/doc/pair_lj.txt
+++ b/doc/pair_lj.txt
@@ -173,12 +173,12 @@ separately and one after the other.
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -190,8 +190,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/pair_lj96.html b/doc/pair_lj96.html
index 97d794d73e..940459abb4 100644
--- a/doc/pair_lj96.html
+++ b/doc/pair_lj96.html
@@ -53,12 +53,12 @@ cutoff specified in the pair_style command is used.
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -70,8 +70,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/pair_lj96.txt b/doc/pair_lj96.txt
index dcdb3632c5..2a6280a35f 100644
--- a/doc/pair_lj96.txt
+++ b/doc/pair_lj96.txt
@@ -47,12 +47,12 @@ cutoff specified in the pair_style command is used.
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -64,8 +64,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/pair_lj_coul.html b/doc/pair_lj_coul.html
index 9faaba8715..eae07c2a2e 100644
--- a/doc/pair_lj_coul.html
+++ b/doc/pair_lj_coul.html
@@ -107,12 +107,12 @@ pair, since only one global Coulombic cutoff is allowed.
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -124,8 +124,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/pair_lj_coul.txt b/doc/pair_lj_coul.txt
index 1593ca4170..2a3ebdc97c 100644
--- a/doc/pair_lj_coul.txt
+++ b/doc/pair_lj_coul.txt
@@ -98,12 +98,12 @@ pair, since only one global Coulombic cutoff is allowed.
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -115,8 +115,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/pair_lj_cubic.html b/doc/pair_lj_cubic.html
index b5d72b8452..9bd2996a92 100644
--- a/doc/pair_lj_cubic.html
+++ b/doc/pair_lj_cubic.html
@@ -64,12 +64,12 @@ so rmin = 1.
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -81,8 +81,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/pair_lj_cubic.txt b/doc/pair_lj_cubic.txt
index 5d60cb12b4..f1f17c9f9d 100644
--- a/doc/pair_lj_cubic.txt
+++ b/doc/pair_lj_cubic.txt
@@ -60,12 +60,12 @@ so rmin = 1.
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -77,8 +77,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/pair_lj_expand.html b/doc/pair_lj_expand.html
index 9173bc7d5b..91b3130a69 100644
--- a/doc/pair_lj_expand.html
+++ b/doc/pair_lj_expand.html
@@ -57,12 +57,12 @@ optional. If not specified, the global LJ cutoff is used.
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -74,8 +74,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/pair_lj_expand.txt b/doc/pair_lj_expand.txt
index fc9fd047e0..d2be5a81c1 100644
--- a/doc/pair_lj_expand.txt
+++ b/doc/pair_lj_expand.txt
@@ -51,12 +51,12 @@ optional. If not specified, the global LJ cutoff is used.
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -68,8 +68,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/pair_lj_sf.html b/doc/pair_lj_sf.html
index 7ff9011052..6da69b3e68 100644
--- a/doc/pair_lj_sf.html
+++ b/doc/pair_lj_sf.html
@@ -48,12 +48,12 @@ LJ cutoff specified in the pair_style command is used.
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -65,8 +65,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/pair_lj_sf.txt b/doc/pair_lj_sf.txt
index a56cf7485a..be0d94f5af 100644
--- a/doc/pair_lj_sf.txt
+++ b/doc/pair_lj_sf.txt
@@ -44,12 +44,12 @@ LJ cutoff specified in the pair_style command is used.
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -61,8 +61,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/pair_lj_smooth.html b/doc/pair_lj_smooth.html
index 0805dd5f05..57af043e75 100644
--- a/doc/pair_lj_smooth.html
+++ b/doc/pair_lj_smooth.html
@@ -65,12 +65,12 @@ specified, the global values for Rin and Rc are used.
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -82,8 +82,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/pair_lj_smooth.txt b/doc/pair_lj_smooth.txt
index b08bb47431..a2d37902c9 100644
--- a/doc/pair_lj_smooth.txt
+++ b/doc/pair_lj_smooth.txt
@@ -60,12 +60,12 @@ specified, the global values for Rin and Rc are used.
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -77,8 +77,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/pair_morse.html b/doc/pair_morse.html
index eaf5f16085..42ab9eb6d5 100644
--- a/doc/pair_morse.html
+++ b/doc/pair_morse.html
@@ -55,12 +55,12 @@ cutoff is used.
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -72,8 +72,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/pair_morse.txt b/doc/pair_morse.txt
index b31acbb5ac..5c8293e6bf 100644
--- a/doc/pair_morse.txt
+++ b/doc/pair_morse.txt
@@ -48,12 +48,12 @@ cutoff is used.
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -65,8 +65,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/pair_peri.html b/doc/pair_peri.html
index 33bcbd17c1..c5871b9820 100644
--- a/doc/pair_peri.html
+++ b/doc/pair_peri.html
@@ -83,12 +83,12 @@ details.
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -100,8 +100,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/pair_peri.txt b/doc/pair_peri.txt
index 00f6636493..acaea14e3d 100644
--- a/doc/pair_peri.txt
+++ b/doc/pair_peri.txt
@@ -77,12 +77,12 @@ details.
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -94,8 +94,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/pair_resquared.html b/doc/pair_resquared.html
index 63e274fb52..ebca4fe033 100644
--- a/doc/pair_resquared.html
+++ b/doc/pair_resquared.html
@@ -147,12 +147,12 @@ specified in the pair_style command is used.
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -164,8 +164,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/pair_resquared.txt b/doc/pair_resquared.txt
index 0762b05224..d364346f7b 100755
--- a/doc/pair_resquared.txt
+++ b/doc/pair_resquared.txt
@@ -142,12 +142,12 @@ specified in the pair_style command is used.
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -159,8 +159,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/pair_sdk.html b/doc/pair_sdk.html
index d382c03a9c..c2f9a76c31 100644
--- a/doc/pair_sdk.html
+++ b/doc/pair_sdk.html
@@ -91,11 +91,11 @@ pair_style command.
Styles with a cuda, gpu, omp or opt suffix are functionally
-the same as the corresponding style without the suffix. They have been
-optimized to run faster, depending on your available hardware, as
-discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP, and
OPT packages respectively. They are only enabled if LAMMPS was built with
@@ -107,8 +107,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/pair_sdk.txt b/doc/pair_sdk.txt
index 476fd06fef..536be2a6e8 100644
--- a/doc/pair_sdk.txt
+++ b/doc/pair_sdk.txt
@@ -82,11 +82,11 @@ pair_style command.
:line
Styles with a {cuda}, {gpu}, {omp} or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have been
-optimized to run faster, depending on your available hardware, as
-discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP, and
OPT packages respectively. They are only enabled if LAMMPS was built with
@@ -98,8 +98,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/pair_soft.html b/doc/pair_soft.html
index 145056ece1..0376c6fe5b 100644
--- a/doc/pair_soft.html
+++ b/doc/pair_soft.html
@@ -82,12 +82,12 @@ variables.
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -99,8 +99,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/pair_soft.txt b/doc/pair_soft.txt
index 14f68d7c45..d95c0d23c1 100644
--- a/doc/pair_soft.txt
+++ b/doc/pair_soft.txt
@@ -78,12 +78,12 @@ variables.
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -95,8 +95,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/pair_sw.html b/doc/pair_sw.html
index 6ea6f91277..67165ac0b1 100644
--- a/doc/pair_sw.html
+++ b/doc/pair_sw.html
@@ -141,12 +141,12 @@ taken from the ij and ik pairs (sigma, a, gamma)
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -158,8 +158,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/pair_sw.txt b/doc/pair_sw.txt
index 6395470c8a..b6a8113b7f 100644
--- a/doc/pair_sw.txt
+++ b/doc/pair_sw.txt
@@ -136,12 +136,12 @@ taken from the ij and ik pairs (sigma, a, gamma)
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -153,8 +153,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/pair_table.html b/doc/pair_table.html
index 6b59e441bc..23f0f5bd86 100644
--- a/doc/pair_table.html
+++ b/doc/pair_table.html
@@ -178,12 +178,12 @@ one that matches the specified keyword.
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -195,8 +195,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/pair_table.txt b/doc/pair_table.txt
index 64bdb31f46..c6916de68b 100644
--- a/doc/pair_table.txt
+++ b/doc/pair_table.txt
@@ -174,12 +174,12 @@ one that matches the specified keyword.
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -191,8 +191,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/pair_tersoff.html b/doc/pair_tersoff.html
index 2faa21534c..ef109da047 100644
--- a/doc/pair_tersoff.html
+++ b/doc/pair_tersoff.html
@@ -178,12 +178,12 @@ defined in various papers.
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -195,8 +195,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/pair_tersoff.txt b/doc/pair_tersoff.txt
index d822ac7777..58a88abaaf 100644
--- a/doc/pair_tersoff.txt
+++ b/doc/pair_tersoff.txt
@@ -171,12 +171,12 @@ defined in various papers.
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -188,8 +188,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/pair_tersoff_zbl.html b/doc/pair_tersoff_zbl.html
index be760ba0de..202601f7a4 100644
--- a/doc/pair_tersoff_zbl.html
+++ b/doc/pair_tersoff_zbl.html
@@ -180,12 +180,12 @@ providing the base ZBL implementation.
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -197,8 +197,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/pair_tersoff_zbl.txt b/doc/pair_tersoff_zbl.txt
index bf69d712bf..53888cd032 100644
--- a/doc/pair_tersoff_zbl.txt
+++ b/doc/pair_tersoff_zbl.txt
@@ -176,12 +176,12 @@ providing the base ZBL implementation.
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -193,8 +193,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/pair_tri_lj.html b/doc/pair_tri_lj.html
index 19a1847acb..cbf14115e9 100644
--- a/doc/pair_tri_lj.html
+++ b/doc/pair_tri_lj.html
@@ -86,10 +86,10 @@ is used.
Styles with a cuda, gpu, omp, or opt suffix are functionally
the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -101,8 +101,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/pair_tri_lj.txt b/doc/pair_tri_lj.txt
index c83401f886..6fb9553bb6 100644
--- a/doc/pair_tri_lj.txt
+++ b/doc/pair_tri_lj.txt
@@ -82,10 +82,10 @@ is used.
Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -97,8 +97,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/pair_yukawa.html b/doc/pair_yukawa.html
index 51cdc757c4..2018353626 100644
--- a/doc/pair_yukawa.html
+++ b/doc/pair_yukawa.html
@@ -48,12 +48,12 @@ cutoff is used.
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -65,8 +65,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/pair_yukawa.txt b/doc/pair_yukawa.txt
index 41b72a83a6..a7f6d6eb11 100644
--- a/doc/pair_yukawa.txt
+++ b/doc/pair_yukawa.txt
@@ -44,12 +44,12 @@ cutoff is used.
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -61,8 +61,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/pair_yukawa_colloid.html b/doc/pair_yukawa_colloid.html
index fcb543318d..b41a2f6697 100644
--- a/doc/pair_yukawa_colloid.html
+++ b/doc/pair_yukawa_colloid.html
@@ -79,12 +79,12 @@ yukawa/colloid cutoff is used.
-Styles with a cuda, gpu, omp, or opt suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in this section of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+
Styles with a cuda, gpu, omp, or opt suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in Section_accelerate of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -96,8 +96,8 @@ by including their suffix, or you can use the suffix command in your input script.
-See this section of the manual for more
-instructions on how to use the accelerated styles effectively.
+
See Section_accelerate of the manual for
+more instructions on how to use the accelerated styles effectively.
diff --git a/doc/pair_yukawa_colloid.txt b/doc/pair_yukawa_colloid.txt
index fc85fe3dba..70eb071d5b 100644
--- a/doc/pair_yukawa_colloid.txt
+++ b/doc/pair_yukawa_colloid.txt
@@ -75,12 +75,12 @@ yukawa/colloid cutoff is used.
:line
-Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
-the same as the corresponding style without the suffix. They have
-been optimized to run faster, depending on your available hardware,
-as discussed in "this section"_Section_accelerate.html of the manual.
-The accelerated styles take the same arguments and should produce the
-same results, except for round-off and precision issues.
+Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
+the same as the corresponding style without the suffix. They have
+been optimized to run faster, depending on your available hardware, as
+discussed in "Section_accelerate"_Section_accelerate.html of the
+manual. The accelerated styles take the same arguments and should
+produce the same results, except for round-off and precision issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
packages, respectively. They are only enabled if LAMMPS was built with
@@ -92,8 +92,8 @@ by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
-See "this section"_Section_accelerate.html of the manual for more
-instructions on how to use the accelerated styles effectively.
+See "Section_accelerate"_Section_accelerate.html of the manual for
+more instructions on how to use the accelerated styles effectively.
:line
diff --git a/doc/run_style.html b/doc/run_style.html
index 0fb15a4541..a1defb9e1c 100644
--- a/doc/run_style.html
+++ b/doc/run_style.html
@@ -119,7 +119,7 @@ switches"Section_start.html#start_6 to change this. The log and
screen file for the 2nd partition will not contain thermodynamic
output beyone the 1st timestep of the run.
-See this section of the manual for
+
See Section_accelerate of the manual for
performance details of the speed-up offered by the verlet/split
style. One important performance consideration is the assignemnt of
logical processors in the 2 partitions to the physical cores of a
diff --git a/doc/run_style.txt b/doc/run_style.txt
index 7e7b792a7c..6f98479091 100644
--- a/doc/run_style.txt
+++ b/doc/run_style.txt
@@ -114,7 +114,7 @@ switches"Section_start.html#start_6 to change this. The log and
screen file for the 2nd partition will not contain thermodynamic
output beyone the 1st timestep of the run.
-See "this section"_Section_accelerate.html of the manual for
+See "Section_accelerate"_Section_accelerate.html of the manual for
performance details of the speed-up offered by the {verlet/split}
style. One important performance consideration is the assignemnt of
logical processors in the 2 partitions to the physical cores of a
diff --git a/doc/thermo_style.html b/doc/thermo_style.html
index 3c58443544..8641eb138f 100644
--- a/doc/thermo_style.html
+++ b/doc/thermo_style.html
@@ -298,7 +298,7 @@ equal-style variables can be referenced. See the
or they can invoke other computes, fixes, or variables when evaluated,
so this is a very general means of creating thermodynamic output.
-See this section for information on how to add
+
See Section_modify for information on how to add
new compute and fix styles to LAMMPS to calculate quantities that can
then be referenced with these keywords to generate thermodynamic
output.
diff --git a/doc/thermo_style.txt b/doc/thermo_style.txt
index 8f4a64148d..0e77cb7287 100644
--- a/doc/thermo_style.txt
+++ b/doc/thermo_style.txt
@@ -292,7 +292,7 @@ equal-style variables can be referenced. See the
or they can invoke other computes, fixes, or variables when evaluated,
so this is a very general means of creating thermodynamic output.
-See "this section"_Section_modify.html for information on how to add
+See "Section_modify"_Section_modify.html for information on how to add
new compute and fix styles to LAMMPS to calculate quantities that can
then be referenced with these keywords to generate thermodynamic
output.