forked from lijiext/lammps
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Disclaimer: Using these force fields for systems they
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have not been explicitly trained against may produce
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unrealistic results. Please see the README file in
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each subdirectory for more detailed information.
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Ammonia Borane:
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The follow information is reproduced from:
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"Weismiller, M.R.; van Duin, A.C.T.; Lee, J.;
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Yetter, R.A. J. Phys. Chem. A 2010, 114, 5485-5492"
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- QM data were generated describing the single and
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(if relevant) double and triple bond dissociation
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for all B/N/O/H combinations. These data were used
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to derive initial ReaxFF bond parameters, and all
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calculations were performed using DFT with the B3LYP
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functional and the Pople 6-311G** basis set.
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- The training set was then extended with QM data
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describing angular distortions in a set of small
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AB-related (AB = H3N-BH3) molecules. These data
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were used to derive the initial ReaxFF angular
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parameters.
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- The training set was extended with reaction barriers
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for key reaction steps such as H2 release
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from AB, dimerization of H2B-NH2 and reaction
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energies associated with H2 release from AB and with AB
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oxidation.
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@ -0,0 +1,121 @@
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# Ammonia Borane
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104 atoms
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3 atom types
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0 25.000 xlo xhi
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0 25.000 ylo yhi
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0 25.000 zlo zhi
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Masses
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1 1.0080
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2 10.8117
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3 14.0067
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Atoms
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1 3 0.0 21.58564 10.86619 4.70885
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2 1 0.0 21.19760 9.94446 4.74054
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3 1 0.0 21.14376 11.32383 5.48963
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4 1 0.0 22.52969 10.72323 5.03709
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5 2 0.0 21.33003 11.52202 3.17801
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6 1 0.0 20.16015 11.81000 3.18142
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7 1 0.0 22.10959 12.43989 3.23920
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8 1 0.0 21.67217 10.56122 2.52638
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9 3 0.0 4.24143 19.61017 3.81309
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10 1 0.0 3.56235 19.79503 4.54088
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11 1 0.0 3.71635 19.01681 3.17657
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12 1 0.0 4.26467 20.49478 3.31128
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13 2 0.0 5.67609 18.91643 4.40855
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14 1 0.0 5.24445 17.78451 4.37952
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15 1 0.0 6.37233 19.23409 3.46283
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16 1 0.0 6.25149 19.12579 5.47206
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17 3 0.0 0.89462 7.91396 14.99527
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18 1 0.0 0.72479 8.43031 15.83903
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19 1 0.0 1.24806 8.61493 14.37633
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20 1 0.0 1.70866 7.41947 15.22380
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21 2 0.0 24.55492 6.97703 14.54765
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22 1 0.0 24.03223 6.60612 15.57703
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23 1 0.0 23.92498 7.80225 13.92379
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24 1 0.0 0.02583 6.09167 13.87354
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25 3 0.0 4.66465 16.82677 16.99192
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26 1 0.0 4.62534 16.28658 16.13848
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27 1 0.0 3.74455 16.70664 17.37073
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28 1 0.0 5.23064 16.24589 17.59551
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29 2 0.0 5.02445 18.47393 16.97100
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30 1 0.0 4.62973 18.72985 18.08626
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31 1 0.0 6.20730 18.68932 16.81563
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32 1 0.0 4.32199 18.83556 16.05590
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33 3 0.0 7.48903 15.88476 18.79121
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34 1 0.0 8.31121 15.49673 19.21568
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35 1 0.0 6.87045 15.09772 18.76578
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36 1 0.0 7.10399 16.44296 19.54910
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37 2 0.0 7.93310 16.32894 17.23434
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38 1 0.0 8.43068 15.30470 16.80480
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39 1 0.0 6.95342 16.67000 16.59839
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40 1 0.0 8.73737 17.23060 17.31825
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41 3 0.0 19.55405 16.45468 3.81603
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42 1 0.0 19.01196 16.26900 4.64950
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43 1 0.0 18.84178 16.63550 3.12282
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44 1 0.0 19.92571 17.37229 3.99337
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45 2 0.0 20.78058 15.38170 3.37516
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46 1 0.0 21.31391 15.94910 2.45252
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47 1 0.0 21.43655 15.29867 4.38599
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48 1 0.0 20.19343 14.37495 3.05930
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49 3 0.0 11.25650 13.93863 6.50513
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50 1 0.0 10.47802 13.34119 6.29339
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51 1 0.0 10.88883 14.52507 7.24873
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52 1 0.0 11.88104 13.31764 7.00803
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53 2 0.0 11.80335 14.65105 5.07290
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54 1 0.0 10.81860 15.20998 4.64424
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55 1 0.0 12.62637 15.36828 5.60115
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56 1 0.0 12.23749 13.81655 4.31005
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57 3 0.0 14.12278 18.92964 16.18553
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58 1 0.0 13.86785 18.29885 16.93515
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59 1 0.0 14.63200 19.65592 16.67737
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60 1 0.0 14.85867 18.42143 15.71710
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61 2 0.0 12.82506 19.32328 15.17366
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62 1 0.0 12.30690 18.24359 15.00075
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63 1 0.0 12.09247 20.11034 15.72994
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64 1 0.0 13.40632 19.74074 14.20032
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65 3 0.0 7.15975 7.91772 21.87223
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66 1 0.0 6.94095 8.85484 22.14906
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67 1 0.0 7.14577 7.42244 22.75116
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68 1 0.0 6.30154 7.60932 21.43191
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69 2 0.0 8.65756 7.96870 21.10184
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70 1 0.0 9.23138 8.64523 21.92967
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71 1 0.0 9.14659 6.87844 20.90953
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72 1 0.0 8.38539 8.53998 20.07235
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73 3 0.0 3.60275 6.07904 14.47750
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74 1 0.0 3.06913 6.82785 14.81958
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75 1 0.0 4.31760 6.55009 13.96420
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76 1 0.0 4.08183 5.77530 15.28947
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77 2 0.0 2.92592 4.66779 13.85448
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78 1 0.0 3.93110 4.13782 13.43914
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79 1 0.0 2.38889 4.03886 14.73441
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80 1 0.0 2.16003 5.04498 12.99309
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81 3 0.0 19.85292 10.63565 14.28476
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82 1 0.0 20.41401 10.45720 13.46284
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83 1 0.0 19.71088 11.63033 14.24389
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84 1 0.0 18.94474 10.27406 14.01871
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85 2 0.0 20.47644 10.22299 15.80000
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86 1 0.0 20.56662 9.01697 15.78854
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87 1 0.0 21.53177 10.81320 15.70304
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88 1 0.0 19.76851 10.65037 16.68948
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89 3 0.0 9.35755 2.14123 0.37265
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90 1 0.0 9.85587 2.70547 1.05361
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91 1 0.0 9.77467 2.42073 24.50548
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92 1 0.0 9.75048 1.22190 0.52235
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93 2 0.0 7.67209 2.24069 0.25918
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94 1 0.0 7.61413 3.39707 24.90925
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95 1 0.0 7.02283 1.51970 24.53256
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96 1 0.0 7.45770 2.01651 1.43307
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97 3 0.0 14.57295 16.09372 1.38098
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98 1 0.0 14.96678 16.71455 2.07503
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99 1 0.0 14.15675 16.73222 0.71986
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100 1 0.0 15.38847 15.76347 0.88832
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101 2 0.0 13.58777 14.84818 1.95819
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102 1 0.0 14.21056 14.18883 2.76070
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103 1 0.0 12.64767 15.42497 2.46003
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104 1 0.0 13.37239 14.31125 0.90033
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@ -0,0 +1,151 @@
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Reactive MD-force field for Ammonia Borane: Weismiller, M.R.; van Duin, A.C.T.; Lee, J.; Yetter, R.A. J. Phys. Chem. A 2010, 114, 5485-5492
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39 ! Number of general parameters
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50.0000 !Overcoordination parameter
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9.4514 !Overcoordination parameter
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56.6636 !Valency angle conjugation parameter
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3.0000 !Triple bond stabilisation parameter
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6.5000 !Triple bond stabilisation parameter
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50.0000 !C2-correction
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1.0701 !Undercoordination parameter
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15.0000 !Triple bond stabilisation parameter
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11.9083 !Undercoordination parameter
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13.3822 !Undercoordination parameter
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-24.6710 !Triple bond stabilization energy
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0.0000 !Lower Taper-radius
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10.0000 !Upper Taper-radius
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2.8793 !Not used
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33.8667 !Valency undercoordination
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5.8971 !Valency angle/lone pair parameter
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1.0563 !Valency angle
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2.0384 !Valency angle parameter
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6.1431 !Not used
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6.9290 !Double bond/angle parameter
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0.3989 !Double bond/angle parameter: overcoord
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3.9954 !Double bond/angle parameter: overcoord
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-2.4837 !Not used
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5.8374 !Torsion/BO parameter
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10.0000 !Torsion overcoordination
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1.8820 !Torsion overcoordination
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-1.2327 !Conjugation 0 (not used)
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2.1861 !Conjugation
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1.5591 !vdWaals shielding
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0.0100 !Cutoff for bond order (*100)
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0.7151 !Valency angle conjugation parameter
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2.7425 !Overcoordination parameter
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12.5819 !Overcoordination parameter
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2.1533 !Valency/lone pair parameter
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0.5000 !Not used
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20.0000 !Not used
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5.0000 !Molecular energy (not used)
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0.0000 !Molecular energy (not used)
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1.4155 !Valency angle conjugation parameter
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5 ! Nr of atoms; cov.r; valency;a.m;Rvdw;Evdw;gammaEEM;cov.r2;#
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alfa;gammavdW;valency;Eunder;Eover;chiEEM;etaEEM;n.u.
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cov r3;Elp;Heat inc.;n.u.;n.u.;n.u.;n.u.
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ov/un;val1;n.u.;val3,vval4
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H 0.6867 1.0000 1.0080 1.3525 0.0616 0.7492 -0.1000 1.0000
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9.3858 5.0013 1.0000 0.0000 121.1250 6.5362 7.0327 1.0000
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-0.1000 0.0000 59.5599 6.1752 4.8714 0.0009 1.0698 0.0000
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-15.7683 2.1504 1.0338 1.0000 2.8793 0.6000 0.1000 10.0000
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O 1.5423 2.0000 15.9990 2.0514 0.0880 1.0184 1.2611 6.0000
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10.2186 7.7719 4.0000 29.5271 116.0768 8.5000 7.5530 2.0000
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0.9909 16.0134 68.6129 42.5068 1.4404 0.0713 0.9745 0.0000
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-3.5965 2.5000 1.0493 4.0000 2.9225 1.4000 0.1000 12.0000
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N 1.5520 3.0000 14.0000 1.7695 0.1375 1.0000 1.2641 5.0000
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10.0677 7.6886 4.0000 27.4217 100.0000 8.1308 7.0000 2.0000
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1.0972 29.9200 -2.3700 2.5862 2.7645 2.6432 0.9745 0.0000
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-6.4340 2.6491 1.0183 4.0000 2.8793 1.4000 0.1000 10.0000
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B 1.3484 3.0000 10.8110 1.8276 0.0500 0.9088 1.0000 3.0000
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12.4662 2.6721 3.0000 7.2404 80.0000 6.8775 6.7020 0.0000
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-1.3000 0.0000 -2.3700 4.0943 6.8208 1.0943 0.0000 0.0000
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-3.6082 1.8000 1.0564 3.0000 2.8413 1.4000 0.1000 12.0000
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X -0.1000 2.0000 1.0080 2.0000 0.0000 1.0000 -0.1000 6.0000
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10.0000 2.5000 4.0000 0.0000 0.0000 8.5000 1.5000 0.0000
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-0.1000 0.0000 -2.3700 8.7410 13.3640 0.6690 0.9745 0.0000
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-11.0000 2.7466 1.0338 6.2998 2.8793 1.0000 0.1000 10.0000
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10 ! Nr of bonds; Edis1;LPpen;n.u.;pbe1;pbo5;13corr;pbo6
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pbe2;pbo3;pbo4;n.u.;pbo1;pbo2;ovcorr
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1 1 165.7021 0.0000 0.0000 -0.8238 0.0000 1.0000 6.0000 0.3597
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6.5603 1.0000 0.0000 1.0000 -0.0113 5.6991 0.0000 0.0000
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2 2 83.4125 192.4592 40.0000 -1.1375 -0.1210 1.0000 22.4755 0.9926
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0.7782 -0.5000 7.0000 1.0000 -0.1796 6.6205 1.0000 0.0000
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2 3 144.4207 110.3672 54.8984 0.7380 -0.1832 1.0000 17.1494 0.5521
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1.1003 -0.4323 6.4197 1.0000 -0.2384 4.7532 1.0000 0.0000
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3 3 104.5870 85.8215 151.8152 -0.9395 -0.2820 1.0000 12.0357 1.0000
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0.3279 -0.4426 8.2367 1.0000 -0.1884 5.6414 1.0000 0.0000
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1 2 207.7908 0.0000 0.0000 -0.8770 0.0000 1.0000 6.0000 0.4021
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1.1523 1.0000 0.0000 0.0000 -0.0570 5.3078 0.0000 0.0000
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1 3 231.8918 0.0000 0.0000 -0.7398 0.0000 1.0000 6.0000 0.4224
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9.1469 1.0000 0.0000 1.0000 -0.0491 5.7202 0.0000 0.0000
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1 4 177.4103 0.0000 0.0000 -0.4601 -0.3000 1.0000 25.0000 0.4971
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9.2806 0.0000 0.0000 1.0000 -0.0722 5.1245 1.0000 0.0000
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3 4 143.9715 94.2037 0.0000 0.2868 -0.2500 1.0000 25.0000 0.1083
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0.5585 -0.2935 10.2737 1.0000 -0.1650 6.5248 1.0000 0.0000
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4 4 109.1015 0.0000 0.0000 1.0000 -0.2500 1.0000 25.0000 0.1000
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0.8313 -0.2000 15.0000 1.0000 -0.0691 5.0065 1.0000 0.0000
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2 4 235.2369 114.6973 0.0000 -0.9000 -0.2500 1.0000 25.0000 0.5534
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0.5237 -0.2746 13.4037 1.0000 -0.0898 6.0651 1.0000 0.0000
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6 ! Nr of off-diagonal terms; Ediss;Ro;gamma;rsigma;rpi;rpi2
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1 2 0.0422 1.8000 10.3041 0.8950 -1.0000 -1.0000
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1 3 0.0367 1.6470 10.5106 0.9496 -1.0000 -1.0000
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2 3 0.1102 1.9459 10.1207 1.2076 1.0927 1.0039
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1 4 0.0526 1.5010 11.2019 1.1648 -1.0000 -1.0000
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3 4 0.0564 1.7000 10.7561 1.4037 1.2073 -1.0000
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2 4 0.0960 2.1711 10.3073 1.3579 1.2435 -1.0000
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40 ! Nr of angles;at1;at2;at3;Thetao,o;ka;kb;pv1;pv2;val(bo)
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1 1 1 0.0000 27.9213 5.8635 0.0000 0.0000 0.0000 1.0400
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2 2 2 90.0000 16.3789 2.2172 -10.0000 0.4537 0.0000 1.3765
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2 2 3 81.8855 14.7823 5.2059 0.0000 0.4537 0.0000 1.0783
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3 2 3 74.9511 45.0000 1.7305 0.0000 0.4537 0.0000 1.0783
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1 2 2 70.9309 45.0568 7.5000 0.0000 2.0000 0.0000 1.0500
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1 2 3 77.8084 44.9886 1.4470 0.0000 0.2904 0.0000 1.0500
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1 2 1 79.2872 14.5680 2.0061 0.0000 0.5136 0.0000 1.3652
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||||
2 3 2 80.6417 45.0000 1.1167 -30.2047 1.7772 0.0000 1.0500
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2 3 3 76.8384 45.0000 1.1304 -0.9193 1.7772 0.0000 1.0500
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||||
3 3 3 73.9146 20.6158 3.9104 0.0000 1.7772 0.0000 1.0500
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||||
1 3 2 84.8524 44.1822 1.7374 0.0000 0.0780 0.0000 1.0369
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1 3 3 72.7618 24.2550 2.3034 0.0000 0.1000 0.0000 1.0400
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||||
1 3 1 85.5836 27.9831 4.0538 0.0000 0.7544 0.0000 1.2487
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||||
2 1 2 0.0000 0.0019 6.0000 0.0000 0.0000 0.0000 1.0400
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||||
2 1 3 0.0000 0.0019 6.0000 0.0000 0.0000 0.0000 1.0400
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||||
3 1 3 0.0000 5.0000 2.0000 0.0000 0.0000 0.0000 1.0400
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||||
1 1 2 0.0000 0.0019 6.0000 0.0000 0.0000 0.0000 1.0400
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||||
1 1 3 0.0000 10.0019 1.0000 0.0000 0.0000 0.0000 1.0400
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||||
1 3 4 55.0000 14.9131 0.5290 0.0000 0.1000 0.0000 1.0400
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||||
1 4 1 62.5987 14.6089 2.3811 0.0000 3.0000 0.0000 3.0000
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||||
1 4 3 55.0000 2.5000 0.1000 0.0000 0.1000 0.0000 2.2627
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||||
1 4 4 55.0000 32.2012 4.7029 0.0000 3.0000 0.0000 1.0400
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3 4 3 72.3075 38.0571 4.2562 0.0000 1.1083 0.0000 1.3861
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4 3 4 50.0000 30.8700 0.8444 0.0000 3.0000 0.0000 1.0576
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||||
3 1 4 0.0000 9.6980 1.0000 0.0000 1.0000 0.0000 1.0400
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||||
1 1 4 0.0000 5.0019 1.0000 0.0000 0.0000 0.0000 1.5000
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||||
1 2 4 72.5977 9.2973 0.7810 0.0000 2.0787 0.0000 3.0000
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||||
1 4 2 65.0000 23.9782 6.0000 0.0000 3.0000 0.0000 1.6585
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2 4 2 50.0000 25.3190 6.0000 0.0000 3.0000 35.0000 3.0000
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||||
4 2 4 60.2683 34.0172 6.0000 0.0000 3.0000 0.0000 1.0400
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||||
2 1 4 0.0000 2.5000 0.1000 0.0000 1.6740 0.0000 2.8604
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||||
2 4 3 67.1161 39.5652 6.0000 0.0000 3.0000 0.0000 1.6555
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||||
2 2 4 90.0000 50.0000 1.5928 0.0000 1.4924 0.0000 1.0400
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2 3 4 70.0000 30.0000 2.0000 0.0000 1.0000 0.0000 1.2500
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||||
3 2 4 70.0000 30.0000 2.0000 0.0000 1.0000 0.0000 1.2500
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||||
4 1 4 0.0000 5.0000 1.0000 0.0000 1.0000 0.0000 1.0400
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||||
3 4 4 50.0000 40.0000 6.0000 0.0000 3.0000 0.0000 1.0400
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||||
3 3 4 70.0000 40.0000 4.0000 0.0000 1.0000 0.0000 1.2500
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||||
4 4 4 70.0000 35.0000 3.0000 0.0000 1.5000 0.0000 1.0100
|
||||
2 4 4 70.0000 20.0000 4.0000 0.0000 1.0000 0.0000 1.2500
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10 ! Nr of torsions;at1;at2;at3;at4;;V1;V2;V3;V2(BO);vconj;n.u;n
|
||||
0 1 1 0 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000
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||||
0 1 2 0 0.0000 0.1000 0.0200 -2.5415 0.0000 0.0000 0.0000
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||||
0 2 2 0 0.0002 150.0000 0.3000 -5.0000 0.0000 0.0000 0.0000
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||||
0 1 3 0 0.0000 0.1000 0.0200 -2.5415 0.0000 0.0000 0.0000
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||||
0 2 3 0 1.3934 72.0073 -0.2804 -9.0000 -2.0000 0.0000 0.0000
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||||
0 3 3 0 -2.0000 24.4048 -0.1617 -3.3327 -2.0000 0.0000 0.0000
|
||||
0 3 4 0 -2.0000 19.3351 0.3228 -5.4735 0.0000 0.0000 0.0000
|
||||
0 4 4 0 0.2500 50.0000 0.3000 -7.5000 0.0000 0.0000 0.0000
|
||||
0 2 4 0 -1.9522 50.0000 -0.5000 -2.5000 0.0000 0.0000 0.0000
|
||||
4 2 2 4 2.0000 75.0000 0.3000 -5.0000 0.0000 0.0000 0.0000
|
||||
4 ! Nr of hydrogen bonds;at1;at2;at3;Rhb;Dehb;vhb1
|
||||
2 1 2 2.0347 -2.5000 3.0000 15.0000
|
||||
2 1 3 2.0000 -2.5000 3.0000 15.0000
|
||||
3 1 2 2.0000 -2.5000 3.0000 15.0000
|
||||
3 1 3 2.0000 -2.5002 3.0000 15.0000
|
|
@ -0,0 +1,23 @@
|
|||
# REAX potential for Nitroamines system
|
||||
# .....
|
||||
|
||||
units real
|
||||
|
||||
atom_style charge
|
||||
read_data data.AB
|
||||
|
||||
pair_style reax/c lmp_control
|
||||
pair_coeff * * ffield.reax.AB H B N
|
||||
|
||||
neighbor 2 bin
|
||||
neigh_modify every 10 delay 0 check no
|
||||
|
||||
fix 1 all nve
|
||||
fix 2 all qeq/reax 1 0.0 10.0 1e-6 param.qeq
|
||||
fix 3 all temp/berendsen 500.0 500.0 100.0
|
||||
|
||||
timestep 0.25
|
||||
|
||||
#dump 1 all atom 30 dump.reax.ab
|
||||
|
||||
run 3000
|
|
@ -0,0 +1,17 @@
|
|||
simulation_name AB_example ! output files will carry this name + their specific ext
|
||||
|
||||
tabulate_long_range 10000 ! denotes the granularity of long range tabulation, 0 means no tabulation
|
||||
energy_update_freq 1
|
||||
|
||||
nbrhood_cutoff 4.5 ! near neighbors cutoff for bond calculations in A
|
||||
hbond_cutoff 6.0 ! cutoff distance for hydrogen bond interactions
|
||||
bond_graph_cutoff 0.3 ! bond strength cutoff for bond graphs
|
||||
thb_cutoff 0.001 ! cutoff value for three body interactions
|
||||
|
||||
write_freq 1 ! write trajectory after so many steps
|
||||
traj_title AB ! (no white spaces)
|
||||
atom_info 1 ! 0: no atom info, 1: print basic atom info in the trajectory file
|
||||
atom_forces 1 ! 0: basic atom format, 1: print force on each atom in the trajectory file
|
||||
atom_velocities 0 ! 0: basic atom format, 1: print the velocity of each atom in the trajectory file
|
||||
bond_info 1 ! 0: do not print bonds, 1: print bonds in the trajectory file
|
||||
angle_info 1 ! 0: do not print angles, 1: print angles in the trajectory file
|
|
@ -0,0 +1,3 @@
|
|||
1 6.5362 14.0654 0.7492
|
||||
2 6.8775 13.4040 0.9088
|
||||
3 8.1308 14.0000 1.0000
|
|
@ -0,0 +1,18 @@
|
|||
Disclaimer: Using these force fields for systems they
|
||||
have not been explicitly trained against may produce
|
||||
unrealistic results. Please see the README file in
|
||||
each subdirectory for more detailed information.
|
||||
|
||||
Au/O
|
||||
|
||||
The follow information is reproduced from
|
||||
"Keith, J. A.; Fantauzzi, D.; Jacob, T.;
|
||||
van Duin, A. C. T. Phys Rev B 2010, 81, 235404"
|
||||
|
||||
- The force field optimization involved parameterization
|
||||
of the fcc, bcc, ideal-hcp, sc, diamond, and a15 bulk phases of Au.
|
||||
For these phases the ReaxFF force field gives good
|
||||
agreement for the binding energy, volume of minimum
|
||||
energy, and curvature of the binding well around the
|
||||
minimum compared to the QM calculations used
|
||||
for parameterization.
|
|
@ -0,0 +1,976 @@
|
|||
# AuO example
|
||||
|
||||
960 atoms
|
||||
2 atom types
|
||||
|
||||
0 26.15618 xlo xhi
|
||||
0 21.54252 ylo yhi
|
||||
0 24.00246 zlo zhi
|
||||
|
||||
Masses
|
||||
|
||||
1 15.9994
|
||||
2 196.9665
|
||||
|
||||
Atoms
|
||||
|
||||
1 2 0.0 0.77942 3.90147 0.45327
|
||||
2 2 0.0 0.77942 3.90147 4.45368
|
||||
3 2 0.0 0.77942 3.90147 8.45409
|
||||
4 2 0.0 0.77942 3.90147 12.45450
|
||||
5 2 0.0 0.77942 3.90147 16.45491
|
||||
6 2 0.0 0.77942 3.90147 20.45532
|
||||
7 2 0.0 0.77942 14.67273 0.45327
|
||||
8 2 0.0 0.77942 14.67273 4.45368
|
||||
9 2 0.0 0.77942 14.67273 8.45409
|
||||
10 2 0.0 0.77942 14.67273 12.45450
|
||||
11 2 0.0 0.77942 14.67273 16.45491
|
||||
12 2 0.0 0.77942 14.67273 20.45532
|
||||
13 2 0.0 13.85751 3.90147 0.45327
|
||||
14 2 0.0 13.85751 3.90147 4.45368
|
||||
15 2 0.0 13.85751 3.90147 8.45409
|
||||
16 2 0.0 13.85751 3.90147 12.45450
|
||||
17 2 0.0 13.85751 3.90147 16.45491
|
||||
18 2 0.0 13.85751 3.90147 20.45532
|
||||
19 2 0.0 13.85751 14.67273 0.45327
|
||||
20 2 0.0 13.85751 14.67273 4.45368
|
||||
21 2 0.0 13.85751 14.67273 8.45409
|
||||
22 2 0.0 13.85751 14.67273 12.45450
|
||||
23 2 0.0 13.85751 14.67273 16.45491
|
||||
24 2 0.0 13.85751 14.67273 20.45532
|
||||
25 2 0.0 5.87820 1.58345 0.45499
|
||||
26 2 0.0 5.87820 1.58345 4.45540
|
||||
27 2 0.0 5.87820 1.58345 8.45581
|
||||
28 2 0.0 5.87820 1.58345 12.45622
|
||||
29 2 0.0 5.87820 1.58345 16.45663
|
||||
30 2 0.0 5.87820 1.58345 20.45704
|
||||
31 2 0.0 5.87820 12.35471 0.45499
|
||||
32 2 0.0 5.87820 12.35471 4.45540
|
||||
33 2 0.0 5.87820 12.35471 8.45581
|
||||
34 2 0.0 5.87820 12.35471 12.45622
|
||||
35 2 0.0 5.87820 12.35471 16.45663
|
||||
36 2 0.0 5.87820 12.35471 20.45704
|
||||
37 2 0.0 18.95629 1.58345 0.45499
|
||||
38 2 0.0 18.95629 1.58345 4.45540
|
||||
39 2 0.0 18.95629 1.58345 8.45581
|
||||
40 2 0.0 18.95629 1.58345 12.45622
|
||||
41 2 0.0 18.95629 1.58345 16.45663
|
||||
42 2 0.0 18.95629 1.58345 20.45704
|
||||
43 2 0.0 18.95629 12.35471 0.45499
|
||||
44 2 0.0 18.95629 12.35471 4.45540
|
||||
45 2 0.0 18.95629 12.35471 8.45581
|
||||
46 2 0.0 18.95629 12.35471 12.45622
|
||||
47 2 0.0 18.95629 12.35471 16.45663
|
||||
48 2 0.0 18.95629 12.35471 20.45704
|
||||
49 2 0.0 7.31156 9.28890 0.45901
|
||||
50 2 0.0 7.31156 9.28890 4.45942
|
||||
51 2 0.0 7.31156 9.28890 8.45983
|
||||
52 2 0.0 7.31156 9.28890 12.46024
|
||||
53 2 0.0 7.31156 9.28890 16.46065
|
||||
54 2 0.0 7.31156 9.28890 20.46106
|
||||
55 2 0.0 7.31156 20.06016 0.45901
|
||||
56 2 0.0 7.31156 20.06016 4.45942
|
||||
57 2 0.0 7.31156 20.06016 8.45983
|
||||
58 2 0.0 7.31156 20.06016 12.46024
|
||||
59 2 0.0 7.31156 20.06016 16.46065
|
||||
60 2 0.0 7.31156 20.06016 20.46106
|
||||
61 2 0.0 20.38965 9.28890 0.45901
|
||||
62 2 0.0 20.38965 9.28890 4.45942
|
||||
63 2 0.0 20.38965 9.28890 8.45983
|
||||
64 2 0.0 20.38965 9.28890 12.46024
|
||||
65 2 0.0 20.38965 9.28890 16.46065
|
||||
66 2 0.0 20.38965 9.28890 20.46106
|
||||
67 2 0.0 20.38965 20.06016 0.45901
|
||||
68 2 0.0 20.38965 20.06016 4.45942
|
||||
69 2 0.0 20.38965 20.06016 8.45983
|
||||
70 2 0.0 20.38965 20.06016 12.46024
|
||||
71 2 0.0 20.38965 20.06016 16.46065
|
||||
72 2 0.0 20.38965 20.06016 20.46106
|
||||
73 2 0.0 12.41979 6.96450 0.45374
|
||||
74 2 0.0 12.41979 6.96450 4.45415
|
||||
75 2 0.0 12.41979 6.96450 8.45456
|
||||
76 2 0.0 12.41979 6.96450 12.45497
|
||||
77 2 0.0 12.41979 6.96450 16.45538
|
||||
78 2 0.0 12.41979 6.96450 20.45579
|
||||
79 2 0.0 12.41979 17.73576 0.45374
|
||||
80 2 0.0 12.41979 17.73576 4.45415
|
||||
81 2 0.0 12.41979 17.73576 8.45456
|
||||
82 2 0.0 12.41979 17.73576 12.45497
|
||||
83 2 0.0 12.41979 17.73576 16.45538
|
||||
84 2 0.0 12.41979 17.73576 20.45579
|
||||
85 2 0.0 25.49788 6.96450 0.45374
|
||||
86 2 0.0 25.49788 6.96450 4.45415
|
||||
87 2 0.0 25.49788 6.96450 8.45456
|
||||
88 2 0.0 25.49788 6.96450 12.45497
|
||||
89 2 0.0 25.49788 6.96450 16.45538
|
||||
90 2 0.0 25.49788 6.96450 20.45579
|
||||
91 2 0.0 25.49788 17.73576 0.45374
|
||||
92 2 0.0 25.49788 17.73576 4.45415
|
||||
93 2 0.0 25.49788 17.73576 8.45456
|
||||
94 2 0.0 25.49788 17.73576 12.45497
|
||||
95 2 0.0 25.49788 17.73576 16.45538
|
||||
96 2 0.0 25.49788 17.73576 20.45579
|
||||
97 2 0.0 2.60605 6.59314 1.46285
|
||||
98 2 0.0 2.60605 6.59314 5.46326
|
||||
99 2 0.0 2.60605 6.59314 9.46367
|
||||
100 2 0.0 2.60605 6.59314 13.46408
|
||||
101 2 0.0 2.60605 6.59314 17.46449
|
||||
102 2 0.0 2.60605 6.59314 21.46490
|
||||
103 2 0.0 2.60605 17.36440 1.46285
|
||||
104 2 0.0 2.60605 17.36440 5.46326
|
||||
105 2 0.0 2.60605 17.36440 9.46367
|
||||
106 2 0.0 2.60605 17.36440 13.46408
|
||||
107 2 0.0 2.60605 17.36440 17.46449
|
||||
108 2 0.0 2.60605 17.36440 21.46490
|
||||
109 2 0.0 15.68414 6.59314 1.46285
|
||||
110 2 0.0 15.68414 6.59314 5.46326
|
||||
111 2 0.0 15.68414 6.59314 9.46367
|
||||
112 2 0.0 15.68414 6.59314 13.46408
|
||||
113 2 0.0 15.68414 6.59314 17.46449
|
||||
114 2 0.0 15.68414 6.59314 21.46490
|
||||
115 2 0.0 15.68414 17.36440 1.46285
|
||||
116 2 0.0 15.68414 17.36440 5.46326
|
||||
117 2 0.0 15.68414 17.36440 9.46367
|
||||
118 2 0.0 15.68414 17.36440 13.46408
|
||||
119 2 0.0 15.68414 17.36440 17.46449
|
||||
120 2 0.0 15.68414 17.36440 21.46490
|
||||
121 2 0.0 4.04063 9.65127 1.45129
|
||||
122 2 0.0 4.04063 9.65127 5.45170
|
||||
123 2 0.0 4.04063 9.65127 9.45211
|
||||
124 2 0.0 4.04063 9.65127 13.45252
|
||||
125 2 0.0 4.04063 9.65127 17.45293
|
||||
126 2 0.0 4.04063 9.65127 21.45334
|
||||
127 2 0.0 4.04063 20.42253 1.45129
|
||||
128 2 0.0 4.04063 20.42253 5.45170
|
||||
129 2 0.0 4.04063 20.42253 9.45211
|
||||
130 2 0.0 4.04063 20.42253 13.45252
|
||||
131 2 0.0 4.04063 20.42253 17.45293
|
||||
132 2 0.0 4.04063 20.42253 21.45334
|
||||
133 2 0.0 17.11872 9.65127 1.45129
|
||||
134 2 0.0 17.11872 9.65127 5.45170
|
||||
135 2 0.0 17.11872 9.65127 9.45211
|
||||
136 2 0.0 17.11872 9.65127 13.45252
|
||||
137 2 0.0 17.11872 9.65127 17.45293
|
||||
138 2 0.0 17.11872 9.65127 21.45334
|
||||
139 2 0.0 17.11872 20.42253 1.45129
|
||||
140 2 0.0 17.11872 20.42253 5.45170
|
||||
141 2 0.0 17.11872 20.42253 9.45211
|
||||
142 2 0.0 17.11872 20.42253 13.45252
|
||||
143 2 0.0 17.11872 20.42253 17.45293
|
||||
144 2 0.0 17.11872 20.42253 21.45334
|
||||
145 2 0.0 9.15245 1.21648 1.46125
|
||||
146 2 0.0 9.15245 1.21648 5.46166
|
||||
147 2 0.0 9.15245 1.21648 9.46207
|
||||
148 2 0.0 9.15245 1.21648 13.46248
|
||||
149 2 0.0 9.15245 1.21648 17.46289
|
||||
150 2 0.0 9.15245 1.21648 21.46330
|
||||
151 2 0.0 9.15245 11.98774 1.46125
|
||||
152 2 0.0 9.15245 11.98774 5.46166
|
||||
153 2 0.0 9.15245 11.98774 9.46207
|
||||
154 2 0.0 9.15245 11.98774 13.46248
|
||||
155 2 0.0 9.15245 11.98774 17.46289
|
||||
156 2 0.0 9.15245 11.98774 21.46330
|
||||
157 2 0.0 22.23054 1.21648 1.46125
|
||||
158 2 0.0 22.23054 1.21648 5.46166
|
||||
159 2 0.0 22.23054 1.21648 9.46207
|
||||
160 2 0.0 22.23054 1.21648 13.46248
|
||||
161 2 0.0 22.23054 1.21648 17.46289
|
||||
162 2 0.0 22.23054 1.21648 21.46330
|
||||
163 2 0.0 22.23054 11.98774 1.46125
|
||||
164 2 0.0 22.23054 11.98774 5.46166
|
||||
165 2 0.0 22.23054 11.98774 9.46207
|
||||
166 2 0.0 22.23054 11.98774 13.46248
|
||||
167 2 0.0 22.23054 11.98774 17.46289
|
||||
168 2 0.0 22.23054 11.98774 21.46330
|
||||
169 2 0.0 10.59067 4.27600 1.45909
|
||||
170 2 0.0 10.59067 4.27600 5.45950
|
||||
171 2 0.0 10.59067 4.27600 9.45991
|
||||
172 2 0.0 10.59067 4.27600 13.46032
|
||||
173 2 0.0 10.59067 4.27600 17.46073
|
||||
174 2 0.0 10.59067 4.27600 21.46114
|
||||
175 2 0.0 10.59067 15.04726 1.45909
|
||||
176 2 0.0 10.59067 15.04726 5.45950
|
||||
177 2 0.0 10.59067 15.04726 9.45991
|
||||
178 2 0.0 10.59067 15.04726 13.46032
|
||||
179 2 0.0 10.59067 15.04726 17.46073
|
||||
180 2 0.0 10.59067 15.04726 21.46114
|
||||
181 2 0.0 23.66876 4.27600 1.45909
|
||||
182 2 0.0 23.66876 4.27600 5.45950
|
||||
183 2 0.0 23.66876 4.27600 9.45991
|
||||
184 2 0.0 23.66876 4.27600 13.46032
|
||||
185 2 0.0 23.66876 4.27600 17.46073
|
||||
186 2 0.0 23.66876 4.27600 21.46114
|
||||
187 2 0.0 23.66876 15.04726 1.45909
|
||||
188 2 0.0 23.66876 15.04726 5.45950
|
||||
189 2 0.0 23.66876 15.04726 9.45991
|
||||
190 2 0.0 23.66876 15.04726 13.46032
|
||||
191 2 0.0 23.66876 15.04726 17.46073
|
||||
192 2 0.0 23.66876 15.04726 21.46114
|
||||
193 2 0.0 0.77139 9.29276 2.45924
|
||||
194 2 0.0 0.77139 9.29276 6.45965
|
||||
195 2 0.0 0.77139 9.29276 10.46006
|
||||
196 2 0.0 0.77139 9.29276 14.46047
|
||||
197 2 0.0 0.77139 9.29276 18.46088
|
||||
198 2 0.0 0.77139 9.29276 22.46129
|
||||
199 2 0.0 0.77139 20.06402 2.45924
|
||||
200 2 0.0 0.77139 20.06402 6.45965
|
||||
201 2 0.0 0.77139 20.06402 10.46006
|
||||
202 2 0.0 0.77139 20.06402 14.46047
|
||||
203 2 0.0 0.77139 20.06402 18.46088
|
||||
204 2 0.0 0.77139 20.06402 22.46129
|
||||
205 2 0.0 13.84948 9.29276 2.45924
|
||||
206 2 0.0 13.84948 9.29276 6.45965
|
||||
207 2 0.0 13.84948 9.29276 10.46006
|
||||
208 2 0.0 13.84948 9.29276 14.46047
|
||||
209 2 0.0 13.84948 9.29276 18.46088
|
||||
210 2 0.0 13.84948 9.29276 22.46129
|
||||
211 2 0.0 13.84948 20.06402 2.45924
|
||||
212 2 0.0 13.84948 20.06402 6.45965
|
||||
213 2 0.0 13.84948 20.06402 10.46006
|
||||
214 2 0.0 13.84948 20.06402 14.46047
|
||||
215 2 0.0 13.84948 20.06402 18.46088
|
||||
216 2 0.0 13.84948 20.06402 22.46129
|
||||
217 2 0.0 5.88406 6.96241 2.45124
|
||||
218 2 0.0 5.88406 6.96241 6.45165
|
||||
219 2 0.0 5.88406 6.96241 10.45206
|
||||
220 2 0.0 5.88406 6.96241 14.45247
|
||||
221 2 0.0 5.88406 6.96241 18.45288
|
||||
222 2 0.0 5.88406 6.96241 22.45329
|
||||
223 2 0.0 5.88406 17.73367 2.45124
|
||||
224 2 0.0 5.88406 17.73367 6.45165
|
||||
225 2 0.0 5.88406 17.73367 10.45206
|
||||
226 2 0.0 5.88406 17.73367 14.45247
|
||||
227 2 0.0 5.88406 17.73367 18.45288
|
||||
228 2 0.0 5.88406 17.73367 22.45329
|
||||
229 2 0.0 18.96215 6.96241 2.45124
|
||||
230 2 0.0 18.96215 6.96241 6.45165
|
||||
231 2 0.0 18.96215 6.96241 10.45206
|
||||
232 2 0.0 18.96215 6.96241 14.45247
|
||||
233 2 0.0 18.96215 6.96241 18.45288
|
||||
234 2 0.0 18.96215 6.96241 22.45329
|
||||
235 2 0.0 18.96215 17.73367 2.45124
|
||||
236 2 0.0 18.96215 17.73367 6.45165
|
||||
237 2 0.0 18.96215 17.73367 10.45206
|
||||
238 2 0.0 18.96215 17.73367 14.45247
|
||||
239 2 0.0 18.96215 17.73367 18.45288
|
||||
240 2 0.0 18.96215 17.73367 22.45329
|
||||
241 2 0.0 7.31681 3.89957 2.45495
|
||||
242 2 0.0 7.31681 3.89957 6.45536
|
||||
243 2 0.0 7.31681 3.89957 10.45577
|
||||
244 2 0.0 7.31681 3.89957 14.45618
|
||||
245 2 0.0 7.31681 3.89957 18.45659
|
||||
246 2 0.0 7.31681 3.89957 22.45700
|
||||
247 2 0.0 7.31681 14.67083 2.45495
|
||||
248 2 0.0 7.31681 14.67083 6.45536
|
||||
249 2 0.0 7.31681 14.67083 10.45577
|
||||
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||||
873 1 0.0 7.52237 13.10636 9.26984
|
||||
874 1 0.0 7.52237 13.10636 13.27025
|
||||
875 1 0.0 7.52237 13.10636 17.27066
|
||||
876 1 0.0 7.52237 13.10636 21.27107
|
||||
877 1 0.0 20.60046 2.33510 1.26902
|
||||
878 1 0.0 20.60046 2.33510 5.26943
|
||||
879 1 0.0 20.60046 2.33510 9.26984
|
||||
880 1 0.0 20.60046 2.33510 13.27025
|
||||
881 1 0.0 20.60046 2.33510 17.27066
|
||||
882 1 0.0 20.60046 2.33510 21.27107
|
||||
883 1 0.0 20.60046 13.10636 1.26902
|
||||
884 1 0.0 20.60046 13.10636 5.26943
|
||||
885 1 0.0 20.60046 13.10636 9.26984
|
||||
886 1 0.0 20.60046 13.10636 13.27025
|
||||
887 1 0.0 20.60046 13.10636 17.27066
|
||||
888 1 0.0 20.60046 13.10636 21.27107
|
||||
889 1 0.0 12.21004 3.15098 1.26262
|
||||
890 1 0.0 12.21004 3.15098 5.26303
|
||||
891 1 0.0 12.21004 3.15098 9.26344
|
||||
892 1 0.0 12.21004 3.15098 13.26385
|
||||
893 1 0.0 12.21004 3.15098 17.26426
|
||||
894 1 0.0 12.21004 3.15098 21.26467
|
||||
895 1 0.0 12.21004 13.92224 1.26262
|
||||
896 1 0.0 12.21004 13.92224 5.26303
|
||||
897 1 0.0 12.21004 13.92224 9.26344
|
||||
898 1 0.0 12.21004 13.92224 13.26385
|
||||
899 1 0.0 12.21004 13.92224 17.26426
|
||||
900 1 0.0 12.21004 13.92224 21.26467
|
||||
901 1 0.0 25.28813 3.15098 1.26262
|
||||
902 1 0.0 25.28813 3.15098 5.26303
|
||||
903 1 0.0 25.28813 3.15098 9.26344
|
||||
904 1 0.0 25.28813 3.15098 13.26385
|
||||
905 1 0.0 25.28813 3.15098 17.26426
|
||||
906 1 0.0 25.28813 3.15098 21.26467
|
||||
907 1 0.0 25.28813 13.92224 1.26262
|
||||
908 1 0.0 25.28813 13.92224 5.26303
|
||||
909 1 0.0 25.28813 13.92224 9.26344
|
||||
910 1 0.0 25.28813 13.92224 13.26385
|
||||
911 1 0.0 25.28813 13.92224 17.26426
|
||||
912 1 0.0 25.28813 13.92224 21.26467
|
||||
913 1 0.0 3.36604 2.72942 0.20120
|
||||
914 1 0.0 3.36604 2.72942 4.20161
|
||||
915 1 0.0 3.36604 2.72942 8.20202
|
||||
916 1 0.0 3.36604 2.72942 12.20243
|
||||
917 1 0.0 3.36604 2.72942 16.20284
|
||||
918 1 0.0 3.36604 2.72942 20.20325
|
||||
919 1 0.0 3.36604 13.50068 0.20120
|
||||
920 1 0.0 3.36604 13.50068 4.20161
|
||||
921 1 0.0 3.36604 13.50068 8.20202
|
||||
922 1 0.0 3.36604 13.50068 12.20243
|
||||
923 1 0.0 3.36604 13.50068 16.20284
|
||||
924 1 0.0 3.36604 13.50068 20.20325
|
||||
925 1 0.0 16.44413 2.72942 0.20120
|
||||
926 1 0.0 16.44413 2.72942 4.20161
|
||||
927 1 0.0 16.44413 2.72942 8.20202
|
||||
928 1 0.0 16.44413 2.72942 12.20243
|
||||
929 1 0.0 16.44413 2.72942 16.20284
|
||||
930 1 0.0 16.44413 2.72942 20.20325
|
||||
931 1 0.0 16.44413 13.50068 0.20120
|
||||
932 1 0.0 16.44413 13.50068 4.20161
|
||||
933 1 0.0 16.44413 13.50068 8.20202
|
||||
934 1 0.0 16.44413 13.50068 12.20243
|
||||
935 1 0.0 16.44413 13.50068 16.20284
|
||||
936 1 0.0 16.44413 13.50068 20.20325
|
||||
937 1 0.0 9.85430 8.13633 0.20338
|
||||
938 1 0.0 9.85430 8.13633 4.20379
|
||||
939 1 0.0 9.85430 8.13633 8.20420
|
||||
940 1 0.0 9.85430 8.13633 12.20461
|
||||
941 1 0.0 9.85430 8.13633 16.20502
|
||||
942 1 0.0 9.85430 8.13633 20.20543
|
||||
943 1 0.0 9.85430 18.90759 0.20338
|
||||
944 1 0.0 9.85430 18.90759 4.20379
|
||||
945 1 0.0 9.85430 18.90759 8.20420
|
||||
946 1 0.0 9.85430 18.90759 12.20461
|
||||
947 1 0.0 9.85430 18.90759 16.20502
|
||||
948 1 0.0 9.85430 18.90759 20.20543
|
||||
949 1 0.0 22.93239 8.13633 0.20338
|
||||
950 1 0.0 22.93239 8.13633 4.20379
|
||||
951 1 0.0 22.93239 8.13633 8.20420
|
||||
952 1 0.0 22.93239 8.13633 12.20461
|
||||
953 1 0.0 22.93239 8.13633 16.20502
|
||||
954 1 0.0 22.93239 8.13633 20.20543
|
||||
955 1 0.0 22.93239 18.90759 0.20338
|
||||
956 1 0.0 22.93239 18.90759 4.20379
|
||||
957 1 0.0 22.93239 18.90759 8.20420
|
||||
958 1 0.0 22.93239 18.90759 12.20461
|
||||
959 1 0.0 22.93239 18.90759 16.20502
|
||||
960 1 0.0 22.93239 18.90759 20.20543
|
|
@ -0,0 +1,105 @@
|
|||
Reactive MD-force field: Au-Au: Keith, J. A. et al. Phys Rev B 2010, 81, 235404; Joshi, K. et al., J. Mat. Chem 2010, 20, 10431-10437
|
||||
39 ! Number of general parameters
|
||||
50.0000 !Overcoordination parameter
|
||||
9.5469 !Overcoordination parameter
|
||||
26.5405 !Valency angle conjugation parameter
|
||||
1.7224 !Triple bond stabilisation parameter
|
||||
6.8702 !Triple bond stabilisation parameter
|
||||
60.4850 !C2-correction
|
||||
1.0588 !Undercoordination parameter
|
||||
4.6000 !Triple bond stabilisation parameter
|
||||
12.1176 !Undercoordination parameter
|
||||
13.3056 !Undercoordination parameter
|
||||
-60.5044 !Triple bond stabilization energy
|
||||
0.0000 !Lower Taper-radius
|
||||
10.0000 !Upper Taper-radius
|
||||
2.8793 !Not used
|
||||
33.8667 !Valency undercoordination
|
||||
6.0891 !Valency angle/lone pair parameter
|
||||
1.0563 !Valency angle
|
||||
2.0384 !Valency angle parameter
|
||||
6.1431 !Not used
|
||||
6.9290 !Double bond/angle parameter
|
||||
0.3989 !Double bond/angle parameter: overcoord
|
||||
3.9954 !Double bond/angle parameter: overcoord
|
||||
-2.4837 !Not used
|
||||
5.7796 !Torsion/BO parameter
|
||||
10.0000 !Torsion overcoordination
|
||||
1.9487 !Torsion overcoordination
|
||||
-1.2327 !Conjugation 0 (not used)
|
||||
2.1645 !Conjugation
|
||||
1.5591 !vdWaals shielding
|
||||
0.1000 !Cutoff for bond order (*100)
|
||||
2.1365 !Valency angle conjugation parameter
|
||||
0.6991 !Overcoordination parameter
|
||||
50.0000 !Overcoordination parameter
|
||||
1.8512 !Valency/lone pair parameter
|
||||
0.5000 !Not used
|
||||
20.0000 !Not used
|
||||
5.0000 !Molecular energy (not used)
|
||||
0.0000 !Molecular energy (not used)
|
||||
2.6962 !Valency angle conjugation parameter
|
||||
3 ! Nr of atoms; cov.r; valency;a.m;Rvdw;Evdw;gammaEEM;cov.r2;#
|
||||
alfa;gammavdW;valency;Eunder;Eover;chiEEM;etaEEM;n.u.
|
||||
cov r3;Elp;Heat inc.;n.u.;n.u.;n.u.;n.u.
|
||||
ov/un;val1;n.u.;val3,vval4
|
||||
H 0.8930 1.0000 1.0080 1.3550 0.0930 0.8203 -0.1000 1.0000
|
||||
8.2230 33.2894 1.0000 0.0000 121.1250 3.7248 9.6093 1.0000
|
||||
-0.1000 0.0000 61.6606 3.0408 2.4197 0.0003 1.0698 0.0000
|
||||
-19.4571 4.2733 1.0338 1.0000 2.8793 0.0000 0.0000 0.0000
|
||||
O 1.2450 2.0000 15.9990 2.3890 0.1000 1.0898 1.0548 6.0000
|
||||
9.7300 13.8449 4.0000 37.5000 116.0768 8.5000 8.3122 2.0000
|
||||
0.9049 0.4056 59.0626 3.5027 0.7640 0.0021 0.9745 0.0000
|
||||
-3.5500 2.9000 1.0493 4.0000 2.9225 0.0000 0.0000 0.0000
|
||||
Au 2.0074 1.0000 196.9665 2.1413 0.3730 0.9623 -1.0000 1.0000
|
||||
12.1061 2.1635 1.0000 0.0000 0.0000 6.0000 5.6481 0.0000
|
||||
-1.0000 0.0000 92.5070 6.2293 5.2294 0.1542 0.8563 0.0000
|
||||
-24.8303 2.9867 1.0338 6.2998 2.5791 0.0000 0.0000 0.0000
|
||||
6 ! Nr of bonds; Edis1;LPpen;n.u.;pbe1;pbo5;13corr;pbo6
|
||||
pbe2;pbo3;pbo4;n.u.;pbo1;pbo2;ovcorr
|
||||
1 1 153.3934 0.0000 0.0000 -0.4600 0.0000 1.0000 6.0000 0.7300
|
||||
6.2500 1.0000 0.0000 1.0000 -0.0790 6.0552 0.0000 0.0000
|
||||
2 2 142.2858 145.0000 50.8293 0.2506 -0.1000 1.0000 29.7503 0.6051
|
||||
0.3451 -0.1055 9.0000 1.0000 -0.1225 5.5000 1.0000 0.0000
|
||||
1 2 160.0000 0.0000 0.0000 -0.5725 0.0000 1.0000 6.0000 0.5626
|
||||
1.1150 1.0000 0.0000 0.0000 -0.0920 4.2790 0.0000 0.0000
|
||||
1 3 100.1691 0.0000 0.0000 -0.2641 0.0000 1.0000 6.0000 0.1273
|
||||
8.0163 1.0000 0.0000 1.0000 -0.1717 9.3297 0.0000 0.0000
|
||||
2 3 120.1812 0.0000 0.0000 -0.0090 -0.2000 1.0000 16.0000 0.1884
|
||||
0.0577 -0.2000 15.0000 1.0000 -0.1541 6.1034 1.0000 0.0000
|
||||
3 3 142.6814 0.0000 0.0000 -0.0100 -0.2000 0.0000 16.0000 0.3663
|
||||
0.2903 -0.2000 15.0000 1.0000 -0.1517 5.2066 0.0000 0.0000
|
||||
3 ! Nr of off-diagonal terms; Ediss;Ro;gamma;rsigma;rpi;rpi2
|
||||
1 2 0.0283 1.2885 10.9190 0.9215 -1.0000 -1.0000
|
||||
1 3 0.1644 1.3669 12.0930 1.7000 -1.0000 -1.0000
|
||||
2 3 0.1645 1.8867 9.8430 1.6576 -1.0000 -1.0000
|
||||
17 ! Nr of angles;at1;at2;at3;Thetao,o;ka;kb;pv1;pv2;val(bo)
|
||||
1 1 1 0.0000 27.9213 5.8635 0.0000 0.0000 0.0000 1.0400
|
||||
2 2 2 80.7324 30.4554 0.9953 0.0000 1.6310 50.0000 1.0783
|
||||
1 2 2 75.6935 50.0000 2.0000 0.0000 1.0000 0.0000 1.1680
|
||||
1 2 1 85.8000 9.8453 2.2720 0.0000 2.8635 0.0000 1.5800
|
||||
2 1 2 0.0000 15.0000 2.8900 0.0000 0.0000 0.0000 2.8774
|
||||
1 1 2 0.0000 8.5744 3.0000 0.0000 0.0000 0.0000 1.0421
|
||||
1 1 3 0.0000 1.0000 1.0000 0.0000 1.0001 0.0000 1.2500
|
||||
1 3 1 90.0000 20.0000 1.0000 0.0000 1.0000 0.0000 1.2500
|
||||
3 1 3 0.0000 10.0000 1.0000 0.0000 1.0000 0.0000 1.2500
|
||||
1 3 3 80.0000 10.0000 1.0000 0.0000 1.0000 0.0000 1.2500
|
||||
1 2 3 70.0000 10.0000 1.0000 0.0000 1.0500 0.0000 1.2500
|
||||
2 1 3 0.0000 5.0000 2.0000 0.0000 1.0000 0.0000 1.2500
|
||||
1 3 2 30.0000 10.0000 2.0000 0.0000 1.0000 0.0000 1.2500
|
||||
2 2 3 80.3915 36.3302 1.5083 0.0000 1.0000 0.0000 1.5506
|
||||
2 3 2 14.1302 7.6175 6.2730 0.0000 0.5000 0.0000 1.0917
|
||||
3 2 3 0.1000 2.8512 8.0000 0.0000 0.5000 0.0000 1.0000
|
||||
2 3 3 6.7044 15.5303 0.5696 0.0000 0.1000 0.0000 1.5220
|
||||
9 ! Nr of torsions;at1;at2;at3;at4;;V1;V2;V3;V2(BO);vconj;n.u;n
|
||||
1 2 2 1 2.5000 -4.0000 0.9000 -2.5000 -1.0000 0.0000 0.0000
|
||||
1 2 2 2 0.8302 -4.0000 -0.7763 -2.5000 -1.0000 0.0000 0.0000
|
||||
2 2 2 2 -2.5000 -4.0000 1.0000 -2.5000 -1.0000 0.0000 0.0000
|
||||
0 1 1 0 0.0000 0.0000 0.0000 0.0000 -1.2327 0.0000 0.0000
|
||||
0 1 2 0 0.0000 0.1000 0.0200 -2.5415 -1.2327 0.0000 0.0000
|
||||
0 2 2 0 0.5511 25.4150 1.1330 -5.1903 -1.0000 0.0000 0.0000
|
||||
1 2 3 3 0.0000 0.0100 0.0100 -5.0000 0.0000 0.0000 0.0000
|
||||
1 2 2 3 0.0000 0.0000 0.0000 -5.0000 0.0000 0.0000 0.0000
|
||||
3 2 2 3 0.0000 0.0000 0.0000 -5.0000 0.0000 0.0000 0.0000
|
||||
1 ! Nr of hydrogen bonds;at1;at2;at3;Rhb;Dehb;vhb1
|
||||
2 1 2 2.1200 -3.5800 1.4500 19.5000
|
|
@ -0,0 +1,23 @@
|
|||
# REAX potential for AuO system
|
||||
# .....
|
||||
|
||||
units real
|
||||
|
||||
atom_style charge
|
||||
read_data data.AuO
|
||||
|
||||
pair_style reax/c lmp_control
|
||||
pair_coeff * * ffield.reax.AuO O Au
|
||||
|
||||
neighbor 2 bin
|
||||
neigh_modify every 10 delay 0 check no
|
||||
|
||||
fix 1 all nve
|
||||
fix 2 all qeq/reax 1 0.0 10.0 1e-6 param.qeq
|
||||
fix 3 all temp/berendsen 500.0 500.0 100.0
|
||||
|
||||
timestep 0.25
|
||||
|
||||
#dump 1 all atom 30 dump.reax.auo
|
||||
|
||||
run 100
|
|
@ -0,0 +1,17 @@
|
|||
simulation_name AuO_example ! output files will carry this name + their specific ext
|
||||
|
||||
tabulate_long_range 10000 ! denotes the granularity of long range tabulation, 0 means no tabulation
|
||||
energy_update_freq 1
|
||||
|
||||
nbrhood_cutoff 4.5 ! near neighbors cutoff for bond calculations in A
|
||||
hbond_cutoff 6.0 ! cutoff distance for hydrogen bond interactions
|
||||
bond_graph_cutoff 0.3 ! bond strength cutoff for bond graphs
|
||||
thb_cutoff 0.001 ! cutoff value for three body interactions
|
||||
|
||||
write_freq 1 ! write trajectory after so many steps
|
||||
traj_title AuO ! (no white spaces)
|
||||
atom_info 1 ! 0: no atom info, 1: print basic atom info in the trajectory file
|
||||
atom_forces 1 ! 0: basic atom format, 1: print force on each atom in the trajectory file
|
||||
atom_velocities 0 ! 0: basic atom format, 1: print the velocity of each atom in the trajectory file
|
||||
bond_info 1 ! 0: do not print bonds, 1: print bonds in the trajectory file
|
||||
angle_info 1 ! 0: do not print angles, 1: print angles in the trajectory file
|
|
@ -0,0 +1,2 @@
|
|||
1 8.5000 16.6244 1.0898
|
||||
2 6.0000 11.2962 0.9623
|
|
@ -0,0 +1,25 @@
|
|||
Disclaimer: Using these force fields for systems they
|
||||
have not been explicitly trained against may produce
|
||||
unrealistic results. Please see the README file in
|
||||
each subdirectory for more detailed information.
|
||||
|
||||
Hydrocarbon oxidation C/H/O:
|
||||
|
||||
The follow information is reproduced from:
|
||||
|
||||
"Chenoweth, K.; van Duin, A.C.T.; Goddard, W.A.
|
||||
J. Phys. Chem. A 2008, 112, 1040-1053."
|
||||
|
||||
- To obtain the H/C/O compound data required to
|
||||
extend the hydrocarbon-training set, DFT
|
||||
calculations were performed on the following systems:
|
||||
(a) dissociation energies for various bonds
|
||||
containing carbon, oxygen, and hydrogen. The
|
||||
ground state structure was obtained through
|
||||
full geometry optimization. Dissociation curves
|
||||
were calculated by constraining only the bond length of
|
||||
interest and re-optimization of the remaining
|
||||
internal coordinates. Optimization was also performed
|
||||
for the various angles and torsions associated
|
||||
with C/H/O interactions.
|
||||
|
|
@ -0,0 +1,122 @@
|
|||
# CHO example
|
||||
|
||||
105 atoms
|
||||
3 atom types
|
||||
|
||||
0 25.000 xlo xhi
|
||||
0 25.000 ylo yhi
|
||||
0 25.000 zlo zhi
|
||||
|
||||
Masses
|
||||
|
||||
1 1.0080
|
||||
2 12.0107
|
||||
3 15.9994
|
||||
|
||||
Atoms
|
||||
|
||||
1 2 0.0 10.67229 14.36836 12.47166
|
||||
2 1 0.0 11.02446 14.91550 13.35233
|
||||
3 1 0.0 11.02446 14.91549 11.59096
|
||||
4 1 0.0 9.57932 14.41980 12.47166
|
||||
5 2 0.0 11.17534 12.87608 12.47165
|
||||
6 1 0.0 10.79792 12.33546 13.34037
|
||||
7 1 0.0 10.79790 12.33545 11.60294
|
||||
8 2 0.0 12.75013 12.93134 12.47163
|
||||
9 1 0.0 13.13241 13.47175 11.60486
|
||||
10 1 0.0 13.13241 13.47210 13.33818
|
||||
11 2 0.0 13.22294 11.42815 12.47199
|
||||
12 1 0.0 12.83858 10.89166 11.60377
|
||||
13 1 0.0 12.83959 10.89255 13.34119
|
||||
14 2 0.0 14.79762 11.45137 12.47107
|
||||
15 1 0.0 15.21044 10.43808 12.47354
|
||||
16 1 0.0 15.19550 11.96345 11.58877
|
||||
17 1 0.0 15.19648 11.96815 13.35018
|
||||
18 2 0.0 0.24250 0.91354 1.10383
|
||||
19 1 0.0 0.97225 1.67509 1.39797
|
||||
20 1 0.0 24.87363 1.18825 0.11010
|
||||
21 1 0.0 24.39847 0.98637 1.79630
|
||||
22 2 0.0 0.86944 24.46895 1.11508
|
||||
23 1 0.0 1.21047 24.19771 2.11484
|
||||
24 1 0.0 0.12679 23.71752 0.84453
|
||||
25 2 0.0 2.06454 24.48829 0.08825
|
||||
26 1 0.0 1.72846 24.75977 24.08683
|
||||
27 1 0.0 2.80951 0.23920 0.35408
|
||||
28 2 0.0 2.67036 23.03401 0.12171
|
||||
29 1 0.0 1.92204 22.28680 24.85503
|
||||
30 1 0.0 3.00638 22.76782 1.12450
|
||||
31 2 0.0 3.87027 23.02208 24.10132
|
||||
32 1 0.0 4.35176 22.04072 24.06515
|
||||
33 1 0.0 3.54082 23.26189 23.08511
|
||||
34 1 0.0 4.63935 23.75310 24.37121
|
||||
35 2 0.0 1.37929 14.62909 17.52744
|
||||
36 1 0.0 1.08393 15.52196 18.08818
|
||||
37 1 0.0 2.47385 14.59977 17.52258
|
||||
38 1 0.0 1.05260 14.77122 16.49293
|
||||
39 2 0.0 0.76275 13.31937 18.14786
|
||||
40 1 0.0 24.67295 13.35030 18.12450
|
||||
41 1 0.0 1.04396 12.44064 17.56651
|
||||
42 2 0.0 1.30113 13.22425 19.62581
|
||||
43 1 0.0 2.39107 13.19385 19.65447
|
||||
44 1 0.0 1.02336 14.10169 20.21106
|
||||
45 2 0.0 0.66878 11.90830 20.21883
|
||||
46 1 0.0 0.94960 11.03396 19.63080
|
||||
47 1 0.0 24.57945 11.94426 20.18968
|
||||
48 2 0.0 1.19125 11.78568 21.69954
|
||||
49 1 0.0 0.79365 10.89123 22.18875
|
||||
50 1 0.0 2.28374 11.72162 21.74071
|
||||
51 1 0.0 0.89616 12.64769 22.30679
|
||||
52 2 0.0 11.41750 7.16471 22.76002
|
||||
53 1 0.0 11.74866 7.28340 21.72336
|
||||
54 1 0.0 11.72154 8.06612 23.30055
|
||||
55 1 0.0 11.97469 6.32478 23.18558
|
||||
56 2 0.0 9.86319 6.92474 22.85179
|
||||
57 1 0.0 9.57626 6.01094 22.33031
|
||||
58 1 0.0 9.54930 6.78307 23.88660
|
||||
59 2 0.0 9.17390 8.18942 22.21244
|
||||
60 1 0.0 9.45849 9.10599 22.73021
|
||||
61 1 0.0 9.48557 8.33580 21.17777
|
||||
62 2 0.0 7.62459 7.92132 22.31840
|
||||
63 1 0.0 7.31756 7.77569 23.35472
|
||||
64 1 0.0 7.34468 7.00469 21.79795
|
||||
65 2 0.0 6.90692 9.17258 21.68631
|
||||
66 1 0.0 5.81845 9.06496 21.71809
|
||||
67 1 0.0 7.15914 10.09632 22.21721
|
||||
68 1 0.0 7.18992 9.31630 20.63835
|
||||
69 2 0.0 4.69047 14.13340 23.48572
|
||||
70 1 0.0 4.95366 15.17281 23.26391
|
||||
71 1 0.0 5.39163 13.78010 24.24888
|
||||
72 1 0.0 4.87514 13.55000 22.57874
|
||||
73 2 0.0 3.19477 13.99798 23.95930
|
||||
74 1 0.0 2.50599 14.33002 23.18163
|
||||
75 1 0.0 2.93803 12.95591 24.15345
|
||||
76 2 0.0 3.05322 14.87431 0.26136
|
||||
77 1 0.0 3.74058 14.54651 1.04202
|
||||
78 1 0.0 3.30993 15.91730 0.07257
|
||||
79 2 0.0 1.55058 14.71961 0.71013
|
||||
80 1 0.0 1.29864 13.67531 0.89801
|
||||
81 1 0.0 0.86725 15.05003 24.92701
|
||||
82 2 0.0 1.37850 15.58633 2.01380
|
||||
83 1 0.0 0.35341 15.53527 2.39297
|
||||
84 1 0.0 2.04062 15.24695 2.81709
|
||||
85 1 0.0 1.60704 16.64178 1.83261
|
||||
86 3 0.0 8.51658 13.05007 22.43728
|
||||
87 3 0.0 9.43965 13.72051 21.88842
|
||||
88 3 0.0 18.16518 4.73455 8.81928
|
||||
89 3 0.0 18.65469 4.57291 7.66370
|
||||
90 3 0.0 6.43553 20.34119 24.80049
|
||||
91 3 0.0 6.44898 20.31621 23.53493
|
||||
92 3 0.0 21.90539 11.54301 19.82384
|
||||
93 3 0.0 20.76137 11.61918 20.36007
|
||||
94 3 0.0 3.42232 11.07545 5.77130
|
||||
95 3 0.0 3.88671 10.95299 4.60048
|
||||
96 3 0.0 11.93988 4.94134 20.86058
|
||||
97 3 0.0 12.98804 5.47798 20.39555
|
||||
98 3 0.0 14.08646 9.50799 20.80806
|
||||
99 3 0.0 14.09449 10.68237 20.33642
|
||||
100 3 0.0 3.45246 19.93144 16.38965
|
||||
101 3 0.0 2.86282 19.60263 15.31936
|
||||
102 3 0.0 12.85008 21.95287 13.63796
|
||||
103 3 0.0 12.06593 21.16486 14.24238
|
||||
104 3 0.0 24.47055 7.42219 14.24997
|
||||
105 3 0.0 24.43181 7.37102 12.98624
|
|
@ -0,0 +1,123 @@
|
|||
Reactive MD-force field c/h/o combustion force field: Chenoweth, K.; van Duin, A.C.T.; Goddard, W.A. J. Phys. Chem. A 2008, 112, 1040-1053.
|
||||
39 ! Number of general parameters
|
||||
50.0000 !p(boc1)
|
||||
9.5469 !p(boc2)
|
||||
26.5405 !p(coa2)
|
||||
1.5105 !p(trip4)
|
||||
6.6630 !p(trip3)
|
||||
70.0000 !kc2
|
||||
1.0588 !p(ovun6)
|
||||
4.6000 !p(trip2)
|
||||
12.1176 !p(ovun7)
|
||||
13.3056 !p(ovun8)
|
||||
-70.1292 !p(trip1)
|
||||
0.0000 !Lower Taper-radius (swa)
|
||||
10.0000 !Upper Taper-radius (swb)
|
||||
0.0000 !not used
|
||||
33.8667 !p(val7)
|
||||
6.0891 !p(lp1)
|
||||
1.0563 !p(val9)
|
||||
2.0384 !p(val10)
|
||||
6.1431 !not used
|
||||
6.9290 !p(pen2)
|
||||
0.3989 !p(pen3)
|
||||
3.9954 !p(pen4)
|
||||
0.0000 !not used
|
||||
5.7796 !p(tor2)
|
||||
10.0000 !p(tor3)
|
||||
1.9487 !p(tor4)
|
||||
0.0000 !not used
|
||||
2.1645 !p(cot2)
|
||||
1.5591 !p(vdW1)
|
||||
0.1000 !Cutoff for bond order*100 (cutoff)
|
||||
2.1365 !p(coa4)
|
||||
0.6991 !p(ovun4)
|
||||
50.0000 !p(ovun3)
|
||||
1.8512 !p(val8)
|
||||
0.0000 !not used
|
||||
0.0000 !not used
|
||||
0.0000 !not used
|
||||
0.0000 !not used
|
||||
2.6962 !p(coa3)
|
||||
3 ! Nr of atoms; atomID;ro(sigma); Val;atom mass;Rvdw;Dij;gamma;ro(pi);Val(e)
|
||||
alfa;gamma(w);Val(angle);p(ovun5);n.u.;chiEEM;etaEEM;n.u.
|
||||
ro(pipi);p(lp2);Heat increment;p(boc4);p(boc3);p(boc5),n.u.;n.u.
|
||||
p(ovun2);p(val3);n.u.;Val(boc);p(val5);n.u.;n.u.;n.u.
|
||||
C 1.3825 4.0000 12.0000 1.9133 0.1853 0.9000 1.1359 4.0000
|
||||
9.7602 2.1346 4.0000 33.2433 79.5548 5.8678 7.0000 0.0000
|
||||
1.2104 0.0000 199.0303 8.6991 34.7289 13.3894 0.8563 0.0000
|
||||
-2.8983 2.5000 1.0564 4.0000 2.9663 0.0000 0.0000 0.0000
|
||||
H 0.7853 1.0000 1.0080 1.5904 0.0419 1.0206 -0.1000 1.0000
|
||||
9.3557 5.0518 1.0000 0.0000 121.1250 5.3200 7.4366 1.0000
|
||||
-0.1000 0.0000 62.4879 1.9771 3.3517 0.7571 1.0698 0.0000
|
||||
-15.7683 2.1488 1.0338 1.0000 2.8793 0.0000 0.0000 0.0000
|
||||
O 1.2477 2.0000 15.9990 1.9236 0.0904 1.0503 1.0863 6.0000
|
||||
10.2127 7.7719 4.0000 36.9573 116.0768 8.5000 8.9989 2.0000
|
||||
0.9088 1.0003 60.8726 20.4140 3.3754 0.2702 0.9745 0.0000
|
||||
-3.6141 2.7025 1.0493 4.0000 2.9225 0.0000 0.0000 0.0000
|
||||
6 ! Nr of bonds; at1;at2;De(sigma);De(pi);De(pipi);p(be1);p(bo5);13corr;n.u.;p(bo6),p(ovun1)
|
||||
p(be2);p(bo3);p(bo4);n.u.;p(bo1);p(bo2)
|
||||
1 1 156.5953 100.0397 80.0000 -0.8157 -0.4591 1.0000 37.7369 0.4235
|
||||
0.4527 -0.1000 9.2605 1.0000 -0.0750 6.8316 1.0000 0.0000
|
||||
1 2 170.2316 0.0000 0.0000 -0.5931 0.0000 1.0000 6.0000 0.7140
|
||||
5.2267 1.0000 0.0000 1.0000 -0.0500 6.8315 0.0000 0.0000
|
||||
2 2 156.0973 0.0000 0.0000 -0.1377 0.0000 1.0000 6.0000 0.8240
|
||||
2.9907 1.0000 0.0000 1.0000 -0.0593 4.8358 0.0000 0.0000
|
||||
1 3 160.4802 105.1693 23.3059 -0.3873 -0.1613 1.0000 10.8851 1.0000
|
||||
0.5341 -0.3174 7.0303 1.0000 -0.1463 5.2913 0.0000 0.0000
|
||||
3 3 60.1463 176.6202 51.1430 -0.2802 -0.1244 1.0000 29.6439 0.9114
|
||||
0.2441 -0.1239 7.6487 1.0000 -0.1302 6.2919 1.0000 0.0000
|
||||
2 3 180.4373 0.0000 0.0000 -0.8074 0.0000 1.0000 6.0000 0.5514
|
||||
1.2490 1.0000 0.0000 1.0000 -0.0657 5.0451 0.0000 0.0000
|
||||
3 ! Nr of off-diagonal terms. at1;at2;Dij;RvdW;alfa;ro(sigma);ro(pi);ro(pipi)
|
||||
1 2 0.1219 1.4000 9.8442 1.1203 -1.0000 -1.0000
|
||||
2 3 0.0344 1.6800 10.3247 0.9013 -1.0000 -1.0000
|
||||
1 3 0.1131 1.8523 9.8442 1.2775 1.1342 1.0621
|
||||
18 ! Nr of angles. at1;at2;at3;Thetao,o;p(val1);p(val2);p(coa1);p(val7);p(pen1);p(val4)
|
||||
1 1 1 67.2326 22.0695 1.6286 0.0000 1.7959 15.4141 1.8089
|
||||
1 1 2 65.2527 14.3185 6.2977 0.0000 0.5645 0.0000 1.1530
|
||||
2 1 2 70.0840 25.3540 3.4508 0.0000 0.0050 0.0000 3.0000
|
||||
1 2 2 0.0000 0.0000 6.0000 0.0000 0.0000 0.0000 1.0400
|
||||
1 2 1 0.0000 3.4110 7.7350 0.0000 0.0000 0.0000 1.0400
|
||||
2 2 2 0.0000 27.9213 5.8635 0.0000 0.0000 0.0000 1.0400
|
||||
1 1 3 49.5561 7.3771 4.9568 0.0000 0.7533 15.9906 1.0010
|
||||
3 1 3 77.1171 39.8746 2.5403 -24.3902 1.7740 -42.9758 2.1240
|
||||
2 1 3 65.0000 14.2057 4.8649 0.0000 0.3504 0.0000 1.7185
|
||||
1 3 1 74.3994 44.7500 0.7982 0.0000 3.0000 0.0000 1.0528
|
||||
1 3 3 77.9854 36.6201 2.0201 0.0000 0.7434 67.0264 3.0000
|
||||
3 3 3 80.7324 30.4554 0.9953 0.0000 1.6310 50.0000 1.0783
|
||||
1 3 2 71.5018 21.7062 0.4735 0.0000 0.5186 0.0000 1.1793
|
||||
2 3 3 84.9468 23.3540 1.5057 0.0000 2.6374 0.0000 1.3023
|
||||
2 3 2 77.0645 10.4737 1.2895 0.0000 0.9924 0.0000 1.1043
|
||||
1 2 3 0.0000 25.0000 3.0000 0.0000 1.0000 0.0000 1.0400
|
||||
3 2 3 0.0000 0.0148 6.0000 0.0000 0.0000 0.0000 1.0400
|
||||
2 2 3 0.0000 9.7025 6.0000 0.0000 0.0000 0.0000 1.0400
|
||||
26 ! Nr of torsions. at1;at2;at3;at4;;V1;V2;V3;p(tor1);p(cot1);n.u;n.u.
|
||||
1 1 1 1 -0.2500 11.5822 0.1879 -4.7057 -2.2047 0.0000 0.0000
|
||||
1 1 1 2 -0.2500 31.2596 0.1709 -4.6391 -1.9002 0.0000 0.0000
|
||||
2 1 1 2 -0.1770 30.0252 0.4340 -5.0019 -2.0697 0.0000 0.0000
|
||||
1 1 1 3 -0.7098 22.2951 0.0060 -2.5000 -2.1688 0.0000 0.0000
|
||||
2 1 1 3 -0.3568 22.6472 0.6045 -4.0088 -1.0000 0.0000 0.0000
|
||||
3 1 1 3 -0.0528 6.8150 0.7498 -5.0913 -1.0000 0.0000 0.0000
|
||||
1 1 3 1 2.0007 25.5641 -0.0608 -2.6456 -1.1766 0.0000 0.0000
|
||||
1 1 3 2 -1.1953 42.1545 -1.0000 -8.0821 -1.0000 0.0000 0.0000
|
||||
2 1 3 1 -0.9284 34.3952 0.7285 -2.5440 -2.4641 0.0000 0.0000
|
||||
2 1 3 2 -2.5000 79.6980 1.0000 -3.5697 -2.7501 0.0000 0.0000
|
||||
1 1 3 3 -0.0179 5.0603 -0.1894 -2.5000 -2.0399 0.0000 0.0000
|
||||
2 1 3 3 -0.5583 80.0000 1.0000 -4.4000 -3.0000 0.0000 0.0000
|
||||
3 1 3 1 -2.5000 76.0427 -0.0141 -3.7586 -2.9000 0.0000 0.0000
|
||||
3 1 3 2 0.0345 78.9586 -0.6810 -4.1777 -3.0000 0.0000 0.0000
|
||||
3 1 3 3 -2.5000 66.3525 0.3986 -3.0293 -3.0000 0.0000 0.0000
|
||||
1 3 3 1 2.5000 -0.5332 1.0000 -3.5096 -2.9000 0.0000 0.0000
|
||||
1 3 3 2 -2.5000 3.3219 0.7180 -5.2021 -2.9330 0.0000 0.0000
|
||||
2 3 3 2 2.2500 -6.2288 1.0000 -2.6189 -1.0000 0.0000 0.0000
|
||||
1 3 3 3 0.0531 -17.3983 1.0000 -2.5000 -2.1584 0.0000 0.0000
|
||||
2 3 3 3 0.4723 -12.4144 -1.0000 -2.5000 -1.0000 0.0000 0.0000
|
||||
3 3 3 3 -2.5000 -25.0000 1.0000 -2.5000 -1.0000 0.0000 0.0000
|
||||
0 1 2 0 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000
|
||||
0 2 2 0 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000
|
||||
0 2 3 0 0.0000 0.1000 0.0200 -2.5415 0.0000 0.0000 0.0000
|
||||
0 1 1 0 0.0000 50.0000 0.3000 -4.0000 -2.0000 0.0000 0.0000
|
||||
0 3 3 0 0.5511 25.4150 1.1330 -5.1903 -1.0000 0.0000 0.0000
|
||||
1 ! Nr of hydrogen bonds. at1;at2;at3;r(hb);p(hb1);p(hb2);p(hb3)
|
||||
3 2 3 1.9682 -4.4628 1.7976 3.0000
|
|
@ -0,0 +1,23 @@
|
|||
# REAX potential for CHO system
|
||||
# .....
|
||||
|
||||
units real
|
||||
|
||||
atom_style charge
|
||||
read_data data.CHO
|
||||
|
||||
pair_style reax/c lmp_control
|
||||
pair_coeff * * ffield.reax.cho H C O
|
||||
|
||||
neighbor 2 bin
|
||||
neigh_modify every 10 delay 0 check no
|
||||
|
||||
fix 1 all nve
|
||||
fix 2 all qeq/reax 1 0.0 10.0 1e-6 param.qeq
|
||||
fix 3 all temp/berendsen 500.0 500.0 100.0
|
||||
|
||||
timestep 0.25
|
||||
|
||||
#dump 1 all atom 30 dump.reax.cho
|
||||
|
||||
run 3000
|
|
@ -0,0 +1,17 @@
|
|||
simulation_name CHO_example ! output files will carry this name + their specific ext
|
||||
|
||||
tabulate_long_range 10000 ! denotes the granularity of long range tabulation, 0 means no tabulation
|
||||
energy_update_freq 1
|
||||
|
||||
nbrhood_cutoff 4.5 ! near neighbors cutoff for bond calculations in A
|
||||
hbond_cutoff 6.0 ! cutoff distance for hydrogen bond interactions
|
||||
bond_graph_cutoff 0.3 ! bond strength cutoff for bond graphs
|
||||
thb_cutoff 0.001 ! cutoff value for three body interactions
|
||||
|
||||
write_freq 1 ! write trajectory after so many steps
|
||||
traj_title CHO ! (no white spaces)
|
||||
atom_info 1 ! 0: no atom info, 1: print basic atom info in the trajectory file
|
||||
atom_forces 1 ! 0: basic atom format, 1: print force on each atom in the trajectory file
|
||||
atom_velocities 0 ! 0: basic atom format, 1: print the velocity of each atom in the trajectory file
|
||||
bond_info 1 ! 0: do not print bonds, 1: print bonds in the trajectory file
|
||||
angle_info 1 ! 0: do not print angles, 1: print angles in the trajectory file
|
|
@ -0,0 +1,3 @@
|
|||
1 5.3200 14.8732 1.0206
|
||||
2 5.8678 14.0000 0.9000
|
||||
3 8.5000 17.9978 1.0503
|
|
@ -0,0 +1,13 @@
|
|||
Disclaimer: Using these force fields for systems they
|
||||
have not been explicitly trained against may produce
|
||||
unrealistic results. Please see the README file in
|
||||
each subdirectory for more detailed information.
|
||||
|
||||
F/C/H
|
||||
The follow information is reproduced from:
|
||||
|
||||
"C_F_H (Fluorographene): Sandeep Kumar Singh, S. Goverapet Srinivasan, M. Neek-Amal, S. Costamagna, Adri C. T. van Duin, and F. M. Peeters Phys. Rev. B 87, 104114 (2013)."
|
||||
|
||||
- The ReaxFF force field parameters have been fit
|
||||
to a large quantum mechanics (QM) training set containing
|
||||
monolayer of fluorographene at various temperature.
|
File diff suppressed because it is too large
Load Diff
|
@ -0,0 +1,361 @@
|
|||
Reactive MD-force field: Ni/C (Mueller et al., 2009)
|
||||
39 ! Number of general parameters
|
||||
50.0000 !Overcoordination parameter
|
||||
9.5469 !Overcoordination parameter
|
||||
26.5405 !Valency angle conjugation parameter
|
||||
1.7224 !Triple bond stabilisation parameter
|
||||
6.8702 !Triple bond stabilisation parameter
|
||||
60.4850 !C2-correction
|
||||
1.0588 !Undercoordination parameter
|
||||
4.6000 !Triple bond stabilisation parameter
|
||||
12.1176 !Undercoordination parameter
|
||||
13.3056 !Undercoordination parameter
|
||||
-70.5044 !Triple bond stabilization energy
|
||||
0.0000 !Lower Taper-radius
|
||||
10.0000 !Upper Taper-radius
|
||||
2.8793 !Not used
|
||||
33.8667 !Valency undercoordination
|
||||
6.0891 !Valency angle/lone pair parameter
|
||||
1.0563 !Valency angle
|
||||
2.0384 !Valency angle parameter
|
||||
6.1431 !Not used
|
||||
6.9290 !Double bond/angle parameter
|
||||
0.3842 !Double bond/angle parameter: overcoord
|
||||
2.9294 !Double bond/angle parameter: overcoord
|
||||
-2.4837 !Not used
|
||||
5.7796 !Torsion/BO parameter
|
||||
10.0000 !Torsion overcoordination
|
||||
1.9487 !Torsion overcoordination
|
||||
-1.2327 !Conjugation 0 (not used)
|
||||
2.1645 !Conjugation
|
||||
1.5591 !vdWaals shielding
|
||||
0.1000 !Cutoff for bond order (*100)
|
||||
2.1365 !Valency angle conjugation parameter
|
||||
0.6991 !Overcoordination parameter
|
||||
50.0000 !Overcoordination parameter
|
||||
1.8512 !Valency/lone pair parameter
|
||||
0.5000 !Not used
|
||||
20.0000 !Not used
|
||||
5.0000 !Molecular energy (not used)
|
||||
0.0000 !Molecular energy (not used)
|
||||
2.6962 !Valency angle conjugation parameter
|
||||
10 ! Nr of atoms; cov.r; valency;a.m;Rvdw;Evdw;gammaEEM;cov.r2;#
|
||||
alfa;gammavdW;valency;Eunder;Eover;chiEEM;etaEEM;n.u.
|
||||
cov r3;Elp;Heat inc.;n.u.;n.u.;n.u.;n.u.
|
||||
ov/un;val1;n.u.;val3,vval4
|
||||
C 1.3831 4.0000 12.0000 1.8814 0.1923 0.9000 1.1363 4.0000
|
||||
9.7821 2.1317 4.0000 30.0000 79.5548 5.9666 7.0000 0.0000
|
||||
1.2071 0.0000 186.1720 9.0068 34.9357 13.5366 0.8563 0.0000
|
||||
-2.8983 2.5675 1.0564 4.0000 2.9663 0.0000 0.0000 0.0000
|
||||
H 0.8873 1.0000 1.0080 1.5420 0.0598 0.6883 -0.1000 1.0000
|
||||
8.1910 30.9706 1.0000 0.0000 121.1250 3.5768 10.5896 1.0000
|
||||
-0.1000 0.0000 54.0596 1.3986 2.1457 0.0003 1.0698 0.0000
|
||||
-15.7683 2.1488 1.0338 1.0000 2.8793 0.0000 0.0000 0.0000
|
||||
O 1.2450 2.0000 15.9990 2.3878 0.1023 1.0903 1.0548 6.0000
|
||||
10.5750 32.3923 4.0000 37.5000 116.0768 8.5000 7.5600 2.0000
|
||||
0.9049 -1.0100 70.1357 2.7162 3.2532 0.0021 0.9745 0.0000
|
||||
-3.6141 2.7025 1.0493 4.0000 2.9225 0.0000 0.0000 0.0000
|
||||
N 1.2333 3.0000 14.0000 1.9324 0.1376 0.8596 1.1748 5.0000
|
||||
10.0667 7.8431 4.0000 32.2482 100.0000 6.8418 6.3404 2.0000
|
||||
1.0433 13.7673 139.9837 2.1961 3.0696 2.7683 0.9745 0.0000
|
||||
-4.3875 2.6192 1.0183 4.0000 2.8793 0.0000 0.0000 0.0000
|
||||
S 1.9405 2.0000 32.0600 2.0677 0.2099 1.0336 1.5479 6.0000
|
||||
9.9575 4.9055 4.0000 52.9998 112.1416 5.6210 8.2545 2.0000
|
||||
1.4601 9.7177 71.1843 5.7487 23.2859 12.7147 0.9745 0.0000
|
||||
-11.0000 2.7466 1.0338 6.2998 2.8793 0.0000 0.0000 0.0000
|
||||
F 1.2100 1.0000 18.9984 1.8601 0.1200 0.3000 -0.1000 7.0000
|
||||
11.5000 7.5000 4.0000 9.2533 0.2000 9.0000 15.0000 0.0000
|
||||
-1.0000 35.0000 33.1268 6.9821 4.1799 1.0561 0.0000 0.0000
|
||||
-7.3000 2.6656 1.0493 4.0000 2.9225 0.0000 0.0000 0.0000
|
||||
Pt 1.9820 2.0000 195.0800 2.0423 0.3309 0.3738 -1.0000 2.0000
|
||||
12.3677 6.0083 2.0000 0.0000 0.0000 5.6538 6.2512 0.0000
|
||||
-1.0000 0.0000 142.6300 26.2350 3.2757 0.1586 0.8563 0.0000
|
||||
-13.0000 1.7934 1.0338 5.0000 2.5791 0.0000 0.0000 0.0000
|
||||
Cl 1.8500 1.0000 35.4500 2.0155 0.2300 0.8218 -1.0000 7.0000
|
||||
11.5000 8.1330 1.0000 0.0000 0.0000 8.5038 8.0852 0.0000
|
||||
-1.0000 0.0000 42.6300 6.2293 5.2294 0.1542 0.8563 0.0000
|
||||
-10.2080 2.9867 1.0338 1.0000 2.5791 0.0000 0.0000 0.0000
|
||||
Ni 1.8201 2.0000 58.6900 1.9449 0.1880 0.8218 0.1000 2.0000
|
||||
12.1594 3.8387 2.0000 0.0000 0.0000 4.8038 7.3852 0.0000
|
||||
-1.0000 0.0000 95.6300 50.6786 0.6762 0.0981 0.8563 0.0000
|
||||
-3.7733 3.6035 1.0338 8.0000 2.5791 0.0000 0.0000 0.0000
|
||||
X -0.1000 2.0000 1.0080 2.0000 0.0000 1.0000 -0.1000 6.0000
|
||||
10.0000 2.5000 4.0000 0.0000 0.0000 8.5000 1.5000 0.0000
|
||||
-0.1000 0.0000 -2.3700 8.7410 13.3640 0.6690 0.9745 0.0000
|
||||
-11.0000 2.7466 1.0338 2.0000 2.8793 0.0000 0.0000 0.0000
|
||||
39 ! Nr of bonds; Edis1;LPpen;n.u.;pbe1;pbo5;13corr;pbo6
|
||||
pbe2;pbo3;pbo4;n.u.;pbo1;pbo2;ovcorr
|
||||
1 1 143.3883 96.3926 76.4404 -0.7767 -0.4710 1.0000 34.9900 0.5108
|
||||
0.4271 -0.1116 9.0638 1.0000 -0.0840 6.7452 1.0000 0.0000
|
||||
1 2 181.9084 0.0000 0.0000 -0.4768 0.0000 1.0000 6.0000 0.7499
|
||||
12.8085 1.0000 0.0000 1.0000 -0.0608 6.9928 0.0000 0.0000
|
||||
2 2 168.2342 0.0000 0.0000 -0.2191 0.0000 1.0000 6.0000 1.0062
|
||||
6.1152 1.0000 0.0000 1.0000 -0.0889 6.0000 0.0000 0.0000
|
||||
1 3 158.6946 107.4583 23.3136 -0.4240 -0.1743 1.0000 10.8209 1.0000
|
||||
0.5322 -0.3113 7.0000 1.0000 -0.1447 5.2450 0.0000 0.0000
|
||||
3 3 200.0000 230.7321 50.8293 0.2506 -0.1000 1.0000 29.7503 0.6051
|
||||
0.3451 -0.1055 9.0000 1.0000 -0.1225 5.5000 1.0000 0.0000
|
||||
1 4 134.1215 140.2179 79.9745 0.0163 -0.1428 1.0000 27.0617 0.2000
|
||||
0.1387 -0.3681 7.1611 1.0000 -0.1000 5.0825 1.0000 0.0000
|
||||
3 4 130.8596 169.4551 40.0000 0.3837 -0.1639 1.0000 35.0000 0.2000
|
||||
1.0000 -0.3579 7.0004 1.0000 -0.1193 6.8773 1.0000 0.0000
|
||||
4 4 157.9384 82.5526 152.5336 0.4010 -0.1034 1.0000 12.4261 0.5828
|
||||
0.1578 -0.1509 11.9186 1.0000 -0.0861 5.4271 1.0000 0.0000
|
||||
2 3 163.1043 0.0000 0.0000 -0.4155 0.0000 1.0000 6.0000 0.3607
|
||||
1.9380 1.0000 0.0000 0.0000 -0.0778 4.3082 0.0000 0.0000
|
||||
2 4 231.8173 0.0000 0.0000 -0.3364 0.0000 1.0000 6.0000 0.4402
|
||||
8.8910 1.0000 0.0000 1.0000 -0.0327 6.5754 0.0000 0.0000
|
||||
1 5 128.7959 56.4134 39.0716 0.0688 -0.4463 1.0000 31.1766 0.4530
|
||||
0.1955 -0.3587 6.2148 1.0000 -0.0770 6.6386 1.0000 0.0000
|
||||
2 5 136.1049 0.0000 0.0000 -0.4669 0.0000 1.0000 6.0000 0.3803
|
||||
10.5730 1.0000 0.0000 1.0000 -0.1000 7.0000 1.0000 0.0000
|
||||
3 5 165.3308 220.0000 40.0000 0.7131 -0.2406 1.0000 22.1005 0.2000
|
||||
0.8027 -0.2748 8.3393 1.0000 -0.1043 5.6108 1.0000 0.0000
|
||||
4 5 130.0000 180.0000 0.0000 0.5000 -0.2000 1.0000 40.0000 0.3000
|
||||
0.4000 -0.2500 9.0000 1.0000 -0.1000 6.0000 1.0000 0.0000
|
||||
5 5 96.1871 93.7006 68.6860 0.0955 -0.4781 1.0000 17.8574 0.6000
|
||||
0.2723 -0.2373 9.7875 1.0000 -0.0950 6.4757 1.0000 0.0000
|
||||
1 6 237.8781 0.0000 0.0000 -0.7438 -0.5000 1.0000 35.0000 1.0460
|
||||
3.6661 -0.2500 15.0000 1.0000 -0.0800 5.4719 1.0000 0.0000
|
||||
2 6 0.0000 0.0000 0.0000 -0.4643 0.0000 1.0000 6.0000 0.6151
|
||||
12.3710 1.0000 0.0000 1.0000 -0.1008 8.5980 0.0000 0.0000
|
||||
3 6 0.0000 0.0000 0.0000 0.2500 -0.5000 1.0000 45.0000 0.6000
|
||||
0.4000 -0.2500 15.0000 1.0000 -0.1000 10.0000 1.0000 0.0000
|
||||
4 6 0.0000 0.0000 0.0000 -0.4643 0.0000 1.0000 6.0000 0.6151
|
||||
12.3710 1.0000 0.0000 1.0000 -0.0098 8.5980 0.0000 0.0000
|
||||
5 6 0.0000 0.0000 0.0000 0.2500 -0.5000 1.0000 45.0000 0.6000
|
||||
0.4000 -0.2500 15.0000 1.0000 -0.1000 10.0000 1.0000 0.0000
|
||||
6 6 250.0765 0.0000 0.0000 0.2298 -0.3500 1.0000 25.0000 0.8427
|
||||
0.1167 -0.2500 15.0000 1.0000 -0.1506 7.3516 1.0000 0.0000
|
||||
6 7 -0.0100 0.0000 0.0000 0.9248 -0.3500 1.0000 35.0000 0.1231
|
||||
0.3064 -0.2500 25.0000 1.0000 -0.1903 8.4146 1.0000 0.0000
|
||||
1 7 164.4424 0.0000 0.0000 -0.0754 -0.2000 1.0000 16.0000 0.4351
|
||||
0.9325 -0.2000 15.0000 1.0000 -0.1809 7.3578 1.0000 0.0000
|
||||
2 7 158.0215 0.0000 0.0000 -0.2597 0.0000 1.0000 6.0000 0.2532
|
||||
36.8276 1.0000 0.0000 1.0000 -0.0837 10.5233 0.0000 0.0000
|
||||
3 7 184.0448 0.0000 0.0000 -0.6623 -0.2000 1.0000 16.0000 0.0151
|
||||
0.6439 -0.2000 15.0000 1.0000 -0.1422 5.0000 1.0000 0.0000
|
||||
4 7 183.3242 0.0000 0.0000 0.5441 -0.2000 1.0000 16.0000 0.6888
|
||||
-0.0634 -0.2000 15.0000 1.0000 -0.1558 5.0000 1.0000 0.0000
|
||||
5 7 0.0000 0.0000 0.0000 0.2500 -0.5000 1.0000 45.0000 0.6000
|
||||
0.4000 -0.2500 15.0000 1.0000 -0.1000 10.0000 1.0000 0.0000
|
||||
7 7 122.1369 0.0000 0.0000 -0.3578 -0.2000 0.0000 16.0000 0.2877
|
||||
0.9897 -0.2000 15.0000 1.0000 -0.0853 5.4801 0.0000 0.0000
|
||||
1 8 50.6675 0.0000 0.0000 0.0004 -0.2000 0.0000 16.0000 0.3115
|
||||
1.0000 -0.2000 15.0000 1.0000 -0.1062 5.1596 0.0000 0.0000
|
||||
2 8 50.6675 0.0000 0.0000 0.0004 -0.2000 0.0000 16.0000 0.3115
|
||||
1.0000 -0.2000 15.0000 1.0000 -0.1062 5.1596 0.0000 0.0000
|
||||
3 8 50.6675 0.0000 0.0000 0.0004 -0.2000 0.0000 16.0000 0.3115
|
||||
1.0000 -0.2000 15.0000 1.0000 -0.1062 5.1596 0.0000 0.0000
|
||||
4 8 50.6675 0.0000 0.0000 0.0004 -0.2000 0.0000 16.0000 0.3115
|
||||
1.0000 -0.2000 15.0000 1.0000 -0.1062 5.1596 0.0000 0.0000
|
||||
7 8 140.6675 0.0000 0.0000 0.0004 -0.2000 0.0000 16.0000 0.3115
|
||||
1.0000 -0.2000 15.0000 1.0000 -0.1062 5.1596 0.0000 0.0000
|
||||
8 8 125.6675 0.0000 0.0000 0.0004 -0.2000 0.0000 16.0000 0.3115
|
||||
1.0000 -0.2000 15.0000 1.0000 -0.1062 7.0000 0.0000 0.0000
|
||||
1 9 83.5810 9.0383 0.0000 0.2531 -0.2000 1.0000 16.0000 0.0529
|
||||
1.4085 -0.1113 13.3900 1.0000 -0.1436 4.5683 1.0000 0.0000
|
||||
2 9 114.7566 0.0000 0.0000 -0.8939 0.0000 1.0000 6.0000 0.1256
|
||||
0.1054 1.0000 0.0000 1.0000 -0.1196 5.0815 0.0000 0.0000
|
||||
3 9 118.6999 0.0000 0.0000 -0.1042 -0.2000 1.0000 16.0000 0.1724
|
||||
0.8280 -0.2500 15.0000 1.0000 -0.1013 5.6326 1.0000 0.0000
|
||||
9 9 91.2220 0.0000 0.0000 -0.2538 -0.2000 0.0000 16.0000 0.2688
|
||||
1.4651 -0.2000 15.0000 1.0000 -0.1435 4.3908 0.0000 0.0000
|
||||
7 9 68.1705 0.0000 0.0000 0.9869 -0.2000 0.0000 16.0000 0.0100
|
||||
0.2118 -0.2000 15.0000 1.0000 -0.2148 4.0000 0.0000 0.0000
|
||||
21 ! Nr of off-diagonal terms; Ediss;Ro;gamma;rsigma;rpi;rpi2
|
||||
1 2 0.1188 1.4017 9.8545 1.1203 -1.0000 -1.0000
|
||||
2 3 0.0299 1.3153 10.9102 0.9093 -1.0000 -1.0000
|
||||
2 4 0.1059 1.8290 9.7818 0.9598 -1.0000 -1.0000
|
||||
1 3 0.1156 1.8520 9.8317 1.2854 1.1352 1.0706
|
||||
1 4 0.1447 1.8766 9.7990 1.3436 1.1885 1.1363
|
||||
3 4 0.1048 2.0003 10.1220 1.3173 1.1096 1.0206
|
||||
1 5 0.1408 1.8161 9.9393 1.7986 1.3021 1.4031
|
||||
2 5 0.0895 1.6239 10.0104 1.4640 -1.0000 -1.0000
|
||||
3 5 0.2250 1.7911 10.2423 1.4546 1.4011 -1.0000
|
||||
4 5 0.1505 1.9000 10.5104 1.8000 1.4000 -1.0000
|
||||
1 6 0.1071 1.6243 11.0402 1.3176 -1.0000 -1.0000
|
||||
2 6 0.0431 1.7204 10.3632 0.5386 -1.0000 -1.0000
|
||||
1 7 0.1204 1.6025 13.6892 1.8982 -1.0000 -1.0000
|
||||
2 7 0.0920 1.6015 11.1362 1.7404 -1.0000 -1.0000
|
||||
3 7 0.1042 2.0014 10.3651 1.5000 -1.0000 -1.0000
|
||||
4 7 0.1000 2.0294 12.2593 1.5743 -1.0000 -1.0000
|
||||
7 8 0.1847 2.1006 11.0261 1.7524 -1.0000 -1.0000
|
||||
1 9 0.0800 1.7085 10.0895 1.5504 1.4005 -1.0000
|
||||
2 9 0.0366 1.7306 11.1019 1.2270 -1.0000 -1.0000
|
||||
3 9 0.0504 1.7959 11.7893 1.4423 -1.0000 -1.0000
|
||||
7 9 0.1919 2.1352 12.2879 1.8319 -1.0000 -1.0000
|
||||
107 ! Nr of angles;at1;at2;at3;Thetao,o;ka;kb;pv1;pv2
|
||||
1 1 1 72.7917 38.5829 0.7209 0.0000 0.1409 17.4509 1.0670
|
||||
1 1 2 72.1533 14.2108 6.2512 0.0000 0.0100 0.0000 1.1022
|
||||
2 1 2 73.2608 24.9703 3.7807 0.0000 0.1335 0.0000 3.0461
|
||||
1 2 2 0.0000 0.0000 6.0000 0.0000 0.0000 0.0000 1.0400
|
||||
1 2 1 0.0000 7.5000 5.0000 0.0000 0.0000 0.0000 1.0400
|
||||
2 2 2 0.0000 27.9213 5.8635 0.0000 0.0000 0.0000 1.0400
|
||||
1 1 3 49.6811 7.1713 4.3889 0.0000 0.7171 10.2661 1.0463
|
||||
3 1 3 77.7473 40.1718 2.9802 -25.3063 1.6170 -46.1315 2.2503
|
||||
1 1 4 66.1305 12.4661 7.0000 0.0000 3.0000 50.0000 1.1880
|
||||
3 1 4 73.9544 12.4661 7.0000 0.0000 3.0000 0.0000 1.1880
|
||||
4 1 4 64.1581 12.4661 7.0000 0.0000 3.0000 0.0000 1.1880
|
||||
2 1 3 65.0000 13.8815 5.0583 0.0000 0.4985 0.0000 1.4900
|
||||
2 1 4 74.2929 31.0883 2.6184 0.0000 0.0755 0.0000 1.0500
|
||||
1 2 4 0.0000 0.0019 6.3000 0.0000 0.0000 0.0000 1.0400
|
||||
1 3 1 73.5312 44.7275 0.7354 0.0000 3.0000 0.0000 1.0684
|
||||
1 3 3 79.4761 36.3701 1.8943 0.0000 0.7351 67.6777 3.0000
|
||||
1 3 4 82.4890 31.4554 0.9953 0.0000 1.6310 0.0000 1.0783
|
||||
3 3 3 80.7324 30.4554 0.9953 0.0000 1.6310 50.0000 1.0783
|
||||
3 3 4 84.3637 31.4554 0.9953 0.0000 1.6310 0.0000 1.0783
|
||||
4 3 4 89.7071 31.4554 0.9953 0.0000 1.6310 0.0000 1.1519
|
||||
1 3 2 70.1880 20.9562 0.3864 0.0000 0.0050 0.0000 1.6924
|
||||
2 3 3 75.6935 25.0000 2.0000 0.0000 1.0000 0.0000 1.1680
|
||||
2 3 4 75.6201 18.7919 0.9833 0.0000 0.1218 0.0000 1.0500
|
||||
2 3 2 77.3619 4.8342 7.1628 0.0000 2.9933 0.0000 1.5948
|
||||
1 4 1 66.0330 22.0295 1.4442 0.0000 1.6777 0.0000 1.0500
|
||||
1 4 3 103.3204 33.0381 0.5787 0.0000 1.6777 0.0000 1.0500
|
||||
1 4 4 104.1335 8.6043 1.6495 0.0000 1.6777 0.0000 1.0500
|
||||
3 4 3 74.1978 42.1786 1.7845 -18.0069 1.6777 0.0000 1.0500
|
||||
3 4 4 74.8600 43.7354 1.1572 -0.9193 1.6777 0.0000 1.0500
|
||||
4 4 4 75.0538 14.8267 5.2794 0.0000 1.6777 0.0000 1.0500
|
||||
1 4 2 69.1106 25.5067 1.1003 0.0000 0.0222 0.0000 1.0369
|
||||
2 4 3 81.3686 40.0712 2.2396 0.0000 0.0222 0.0000 1.0369
|
||||
2 4 4 83.0104 43.4766 1.5328 0.0000 0.0222 0.0000 1.0500
|
||||
2 4 2 70.8687 12.0168 5.0132 0.0000 0.0222 0.0000 1.1243
|
||||
1 2 3 0.0000 25.0000 3.0000 0.0000 1.0000 0.0000 1.0400
|
||||
1 2 4 0.0000 0.0019 6.0000 0.0000 0.0000 0.0000 1.0400
|
||||
1 2 5 0.0000 0.0019 6.0000 0.0000 0.0000 0.0000 1.0400
|
||||
3 2 3 0.0000 4.4124 2.5758 0.0000 0.0000 0.0000 2.9884
|
||||
3 2 4 0.0000 0.0019 6.0000 0.0000 0.0000 0.0000 1.0400
|
||||
4 2 4 0.0000 0.0019 6.0000 0.0000 0.0000 0.0000 1.0400
|
||||
2 2 3 0.0000 15.0000 2.2970 0.0000 0.0000 0.0000 1.3268
|
||||
2 2 4 0.0000 0.0019 6.0000 0.0000 0.0000 0.0000 1.0400
|
||||
1 1 5 74.4180 33.4273 1.7018 0.1463 0.5000 0.0000 1.6178
|
||||
1 5 1 79.7037 28.2036 1.7073 0.1463 0.5000 0.0000 1.6453
|
||||
2 1 5 63.3289 29.4225 2.1326 0.0000 0.5000 0.0000 3.0000
|
||||
1 5 2 85.9449 38.3109 1.2492 0.0000 0.5000 0.0000 1.1000
|
||||
1 5 5 85.6645 40.0000 2.9274 0.1463 0.5000 0.0000 1.3830
|
||||
2 5 2 83.8555 5.1317 0.4377 0.0000 0.5000 0.0000 3.0000
|
||||
2 5 5 97.0064 32.1121 2.0242 0.0000 0.5000 0.0000 2.8568
|
||||
3 5 3 81.0957 22.5308 7.4511 -2.3089 2.8609 0.0000 2.0914
|
||||
1 5 3 70.0000 35.0000 3.4223 0.0000 1.3550 0.0000 1.2002
|
||||
1 3 5 58.9977 36.2016 1.7948 0.0000 0.4304 0.0000 3.0000
|
||||
3 3 5 83.9753 31.0715 3.5590 0.0000 0.8161 0.0000 1.1776
|
||||
2 3 5 90.0000 17.5000 3.5000 0.0000 1.9770 0.0000 3.0000
|
||||
1 1 6 74.0446 35.8484 6.6125 0.0000 0.9453 0.0000 3.0000
|
||||
6 1 6 77.8443 49.0744 5.9913 0.0000 0.7835 0.0000 2.3020
|
||||
1 6 1 0.0000 19.9962 3.2299 0.0000 2.1012 0.0000 1.1537
|
||||
1 6 6 0.0000 25.0000 1.0000 0.0000 1.0000 0.0000 1.0400
|
||||
6 1 2 69.6421 10.0000 2.0000 0.0000 1.0000 0.0000 1.0400
|
||||
3 1 6 70.0000 35.0000 2.0000 0.0000 1.0000 0.0000 1.2500
|
||||
5 1 6 70.0000 35.0000 3.4223 0.0000 1.3550 0.0000 1.2002
|
||||
1 1 7 47.5496 27.7661 4.1587 0.0000 0.1071 0.0000 2.7036
|
||||
7 1 7 32.1368 20.4375 5.6452 0.0000 0.1000 0.0000 1.0500
|
||||
1 7 7 45.9456 1.0000 0.2000 0.0000 0.9740 0.0000 2.9993
|
||||
1 7 1 37.5291 7.4679 1.6697 0.0000 1.0031 0.0000 2.2937
|
||||
2 1 7 31.8742 14.6779 8.0000 0.0000 0.1000 0.0000 1.5559
|
||||
1 7 2 80.6353 1.0000 0.2000 0.5000 1.2901 0.0000 1.1404
|
||||
1 2 7 0.0000 1.0000 0.3609 0.0000 0.2947 0.0000 2.6479
|
||||
2 7 2 115.2319 50.0000 1.6748 0.0000 0.6983 0.0000 1.1000
|
||||
2 2 7 0.0000 34.3910 1.7927 0.0000 -0.3560 0.0000 1.7376
|
||||
3 2 7 0.0000 48.3620 2.0000 0.0000 1.0000 0.0000 1.2500
|
||||
7 2 7 0.0000 15.2364 3.1423 0.0000 0.8301 0.0000 2.2363
|
||||
2 7 7 88.3592 6.6793 5.5369 0.0000 1.2680 0.0000 1.2982
|
||||
7 3 7 96.8452 15.9175 8.8644 0.0000 0.4997 0.0000 1.5295
|
||||
3 7 7 94.9741 41.1348 2.2450 0.0000 0.1218 0.0000 1.9235
|
||||
3 3 7 88.7743 46.3505 1.2281 0.0000 0.6601 0.0000 1.7101
|
||||
3 7 3 54.6586 42.2173 0.5000 0.0000 0.3706 0.0000 1.3157
|
||||
1 7 3 89.0446 31.3538 3.2706 0.0000 2.2596 0.0000 1.1575
|
||||
1 3 7 88.1962 49.8841 9.8946 0.0000 3.6749 0.0000 1.1000
|
||||
3 1 7 105.7527 28.9984 9.4291 0.0000 -0.4379 0.0000 1.1000
|
||||
2 3 7 83.3202 43.6629 6.3865 0.0000 2.9392 0.0000 1.1266
|
||||
2 7 3 32.0466 49.7995 4.1312 0.5000 1.4682 0.0000 1.1000
|
||||
5 1 7 70.0000 35.0000 3.4223 0.0000 1.3550 0.0000 1.2002
|
||||
2 7 7 180.0000 -25.0000 20.0057 0.0000 1.4000 0.0000 1.1000
|
||||
7 2 8 0.0000 35.0000 3.0000 0.0000 0.0000 0.0000 1.0400
|
||||
5 3 7 70.0000 10.0000 1.0000 0.0000 0.1000 0.0000 2.8838
|
||||
1 9 1 62.5000 16.6806 0.7981 0.0000 0.9630 0.0000 1.0711
|
||||
1 1 9 87.6241 12.6504 1.8145 0.0000 0.6154 0.0000 1.5298
|
||||
9 1 9 100.0000 40.4895 1.6455 0.0000 0.0100 0.0000 1.7667
|
||||
1 9 9 5.0994 3.1824 0.7016 0.0000 0.7465 0.0000 2.2665
|
||||
3 9 3 49.6374 27.4219 1.6709 0.0000 0.0369 0.0000 2.5673
|
||||
3 3 9 90.0000 31.1442 5.0000 0.0000 0.5686 0.0000 2.0931
|
||||
9 3 9 42.4507 5.2354 0.5469 0.0000 1.5478 0.0000 1.0400
|
||||
3 9 9 39.2561 2.4303 3.7193 0.0000 0.8924 0.0000 1.9950
|
||||
2 9 2 106.3969 30.0000 0.9614 0.0000 1.9664 0.0000 2.2693
|
||||
2 2 9 0.0000 26.3327 4.6867 0.0000 0.8177 0.0000 1.0404
|
||||
9 2 9 0.0000 60.0000 1.8471 0.0000 0.6331 0.0000 1.8931
|
||||
2 9 9 30.3748 1.0000 4.8528 0.0000 0.1019 0.0000 3.1660
|
||||
2 9 9 180.0000 -27.2489 8.3752 0.0000 0.8112 0.0000 1.0004
|
||||
1 9 2 97.5742 10.9373 2.5200 0.0000 1.8558 0.0000 1.0000
|
||||
1 2 9 0.0000 0.2811 1.1741 0.0000 0.9136 0.0000 3.8138
|
||||
2 1 9 84.0006 45.0000 0.6271 0.0000 3.0000 0.0000 1.0000
|
||||
2 3 9 29.3808 16.2484 2.5832 0.5000 0.0100 0.0000 1.9017
|
||||
1 9 3 70.0000 25.0000 1.0000 0.0000 1.0000 0.0000 1.2500
|
||||
1 3 9 70.0000 25.0000 1.0000 0.0000 1.0000 0.0000 1.2500
|
||||
3 1 9 70.0000 25.0000 1.0000 0.0000 1.0000 0.0000 1.2500
|
||||
3 2 9 0.0000 7.1233 1.9895 0.5000 0.3233 0.0000 1.1000
|
||||
55 ! Nr of torsions;at1;at2;at3;at4;;V1;V2;V3;V2(BO);vconj;n.u;n
|
||||
1 1 1 1 -0.5000 53.0886 -0.1335 -6.2875 -1.9524 0.0000 0.0000
|
||||
1 1 1 2 -0.4614 29.0459 0.2551 -4.8555 -2.7007 0.0000 0.0000
|
||||
2 1 1 2 -0.2833 31.2867 0.2965 -4.8828 -2.4652 0.0000 0.0000
|
||||
1 1 1 3 -0.3495 22.2142 -0.2959 -2.5000 -1.9066 0.0000 0.0000
|
||||
2 1 1 3 0.0646 24.3195 0.6259 -3.9603 -1.0000 0.0000 0.0000
|
||||
3 1 1 3 -0.5456 5.5756 0.8433 -5.1924 -1.0180 0.0000 0.0000
|
||||
1 1 3 1 1.7555 27.9267 0.0072 -2.6533 -1.0000 0.0000 0.0000
|
||||
1 1 3 2 -1.4358 36.7830 -1.0000 -8.1821 -1.0000 0.0000 0.0000
|
||||
2 1 3 1 -1.3959 34.5053 0.7200 -2.5714 -2.1641 0.0000 0.0000
|
||||
2 1 3 2 -2.5000 70.0597 1.0000 -3.5539 -2.9929 0.0000 0.0000
|
||||
1 1 3 3 0.6852 11.2819 -0.4784 -2.5000 -2.1085 0.0000 0.0000
|
||||
2 1 3 3 0.1933 80.0000 1.0000 -4.0590 -3.0000 0.0000 0.0000
|
||||
3 1 3 1 -1.9889 76.4820 -0.1796 -3.8301 -3.0000 0.0000 0.0000
|
||||
3 1 3 2 0.2160 72.7707 -0.7087 -4.2100 -3.0000 0.0000 0.0000
|
||||
3 1 3 3 -2.5000 71.0772 0.2542 -3.1631 -3.0000 0.0000 0.0000
|
||||
1 3 3 1 2.5000 -0.6002 1.0000 -3.4297 -2.8858 0.0000 0.0000
|
||||
1 3 3 2 -2.5000 -3.3822 0.7004 -5.4467 -2.9586 0.0000 0.0000
|
||||
2 3 3 2 2.5000 -4.0000 0.9000 -2.5000 -1.0000 0.0000 0.0000
|
||||
1 3 3 3 1.2329 -4.0000 1.0000 -2.5000 -1.7479 0.0000 0.0000
|
||||
2 3 3 3 0.8302 -4.0000 -0.7763 -2.5000 -1.0000 0.0000 0.0000
|
||||
3 3 3 3 -2.5000 -4.0000 1.0000 -2.5000 -1.0000 0.0000 0.0000
|
||||
0 1 2 0 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000
|
||||
0 2 2 0 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000
|
||||
0 2 3 0 0.0000 0.1000 0.0200 -2.5415 0.0000 0.0000 0.0000
|
||||
0 1 1 0 0.0000 50.0000 0.3000 -4.0000 -2.0000 0.0000 0.0000
|
||||
0 3 3 0 0.5511 25.4150 1.1330 -5.1903 -1.0000 0.0000 0.0000
|
||||
0 1 4 0 -2.4242 128.1636 0.3739 -6.6098 -2.0000 0.0000 0.0000
|
||||
0 2 4 0 0.0000 0.1000 0.0200 -2.5415 0.0000 0.0000 0.0000
|
||||
0 3 4 0 1.4816 55.6641 0.0004 -7.0465 -2.7203 0.0000 0.0000
|
||||
0 4 4 0 -0.3244 27.7086 0.0039 -2.8272 -2.0000 0.0000 0.0000
|
||||
4 1 4 4 -5.5181 8.9706 0.0004 -6.1782 -2.0000 0.0000 0.0000
|
||||
0 1 5 0 3.3423 30.3435 0.0365 -2.7171 0.0000 0.0000 0.0000
|
||||
0 5 5 0 -0.0555 -5.0000 0.1515 -2.2056 0.0000 0.0000 0.0000
|
||||
0 2 5 0 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000
|
||||
1 1 1 6 0.5000 0.1000 0.4683 -11.5274 -1.7255 0.0000 0.0000
|
||||
2 1 1 6 0.0000 49.3871 0.2000 -10.5765 -1.7255 0.0000 0.0000
|
||||
6 1 1 6 -0.5000 95.4727 -0.2080 -4.8579 -1.7255 0.0000 0.0000
|
||||
0 1 6 0 4.0000 45.8264 0.9000 -4.0000 0.0000 0.0000 0.0000
|
||||
0 6 6 0 4.0000 45.8264 0.9000 -4.0000 0.0000 0.0000 0.0000
|
||||
2 3 7 7 0.0000 0.0100 0.0100 -5.2275 0.0000 0.0000 0.0000
|
||||
2 3 3 7 2.5000 8.9261 2.0000 -2.5710 -1.0000 0.0000 0.0000
|
||||
7 3 3 7 1.8548 50.0000 0.0100 -4.2239 -1.0000 0.0000 0.0000
|
||||
2 3 1 7 0.0654 10.5105 0.0100 -4.7886 -1.0000 0.0000 0.0000
|
||||
1 1 1 7 0.5732 40.5542 0.7425 -3.6935 0.0000 0.0000 0.0000
|
||||
7 1 1 7 -1.0102 40.4890 0.0100 -3.4787 0.0000 0.0000 0.0000
|
||||
2 1 1 7 2.5000 50.0000 2.0000 -7.0766 0.0000 0.0000 0.0000
|
||||
2 3 5 3 2.5000 2.5000 0.2237 -10.0000 -1.0000 0.0000 0.0000
|
||||
0 3 5 0 -2.5000 50.0000 -0.5000 -10.0000 -1.0000 0.0000 0.0000
|
||||
1 1 1 9 0.0000 5.0000 0.4000 -6.0000 0.0000 0.0000 0.0000
|
||||
9 1 1 9 0.0000 44.3024 0.4000 -4.0000 0.0000 0.0000 0.0000
|
||||
2 1 1 9 0.0000 21.7038 0.0100 -4.0000 0.0000 0.0000 0.0000
|
||||
2 1 9 1 0.0000 5.2500 0.0100 -6.0000 0.0000 0.0000 0.0000
|
||||
1 1 9 1 0.0000 5.1676 0.0100 -5.9539 0.0000 0.0000 0.0000
|
||||
1 1 9 2 0.0000 5.1676 0.0100 -5.9539 0.0000 0.0000 0.0000
|
||||
9 3 3 9 0.0509 30.0000 0.5000 -4.0000 0.0000 0.0000 0.0000
|
||||
9 ! Nr of hydrogen bonds;at1;at2;at3;Rhb;Dehb;vhb1
|
||||
3 2 3 2.1845 -2.3549 3.0582 19.1627
|
||||
3 2 4 1.6658 -3.8907 3.0582 19.1627
|
||||
4 2 3 1.8738 -3.5421 3.0582 19.1627
|
||||
4 2 4 1.8075 -4.1846 3.0582 19.1627
|
||||
3 2 5 1.5000 -2.0000 3.0582 19.1627
|
||||
4 2 5 1.5000 -2.0000 3.0582 19.1627
|
||||
5 2 3 1.5000 -2.0000 3.0582 19.1627
|
||||
5 2 4 1.5000 -2.0000 3.0582 19.1627
|
||||
5 2 5 1.5000 -2.0000 3.0582 19.1627
|
|
@ -0,0 +1,34 @@
|
|||
# REAX potential for Nitroamines system
|
||||
# .....
|
||||
|
||||
dimension 3
|
||||
boundary p p p
|
||||
units real
|
||||
|
||||
atom_style charge
|
||||
read_data data.FC
|
||||
|
||||
pair_style reax/c NULL
|
||||
pair_coeff * * ffield.reax.FC C F
|
||||
neighbor 2. bin
|
||||
neigh_modify every 10 delay 0 check no
|
||||
fix 2 all qeq/reax 1 0.0 10.0 1e-6 reax/c
|
||||
|
||||
fix 1 all npt temp 100.0 100.0 10.0 iso 1.0 1. 2000.0
|
||||
timestep 0.2
|
||||
thermo_style custom step temp epair etotal press
|
||||
thermo 5000
|
||||
dump 4 all xyz 5000 dumpnpt.xyz
|
||||
run 50000
|
||||
unfix 1
|
||||
|
||||
fix 1 all nvt temp 100.0 100.0 100.0
|
||||
|
||||
thermo_style custom step temp epair etotal press
|
||||
thermo 5000
|
||||
timestep 0.2
|
||||
|
||||
#dump 5 all xyz 5000 dumpnvt.xyz
|
||||
#dump 6 all custom 5000 dumpidtype.dat id type x y z
|
||||
|
||||
run 1000000
|
|
@ -0,0 +1,29 @@
|
|||
Disclaimer: Using these force fields for systems they
|
||||
have not been explicitly trained against may produce
|
||||
unrealistic results. Please see the README file in
|
||||
each subdirectory for more detailed information.
|
||||
|
||||
Fe/O/H
|
||||
|
||||
The follow information is reproduced from:
|
||||
|
||||
"Aryanpour, M.; van Duin, A. C. T.; Kubicki,
|
||||
J. D. J. Phys. Chem. A 2010, 114, 6298-6307"
|
||||
|
||||
- The initial force field parameters for the
|
||||
Fe-Fe parameters were taken from an
|
||||
earlier force field development
|
||||
project on bulk-iron metal, based on
|
||||
DFT-calculations on antiferromagnetic
|
||||
BCC and FCC. The DFT data can
|
||||
be found in Ref 31 of the above-mentioned manuscript.
|
||||
The O/H parameters were taken from the ReaxFF bulk
|
||||
water description. The Fe/Fe and O/H parameters were
|
||||
kept fixed to these initial values,
|
||||
whereas the Fe/O parameters were reoptimized
|
||||
against the quantum mechanical results
|
||||
presented in the above-mentioned manuscript.
|
||||
|
||||
- Detailed information on the force field parameters
|
||||
is given in the supporting information of the above mentioned
|
||||
manuscript.
|
|
@ -0,0 +1,122 @@
|
|||
# FeOH3 example
|
||||
|
||||
105 atoms
|
||||
3 atom types
|
||||
|
||||
0 25.000 xlo xhi
|
||||
0 25.000 ylo yhi
|
||||
0 25.000 zlo zhi
|
||||
|
||||
Masses
|
||||
|
||||
1 1.0080
|
||||
2 15.9994
|
||||
3 55.8450
|
||||
|
||||
Atoms
|
||||
|
||||
1 3 0.0 14.63130 11.53919 10.02566
|
||||
2 2 0.0 14.66818 11.64433 8.31385
|
||||
3 2 0.0 13.19732 11.59171 10.97982
|
||||
4 2 0.0 16.09606 11.79339 10.90520
|
||||
5 1 0.0 15.37579 11.57108 7.64798
|
||||
6 1 0.0 13.03522 11.61430 11.93898
|
||||
7 1 0.0 16.34568 11.57890 11.82994
|
||||
8 3 0.0 4.23334 23.22931 22.91765
|
||||
9 2 0.0 3.17949 22.76642 21.63236
|
||||
10 2 0.0 3.72561 23.54563 24.52094
|
||||
11 2 0.0 5.92362 23.49124 22.55535
|
||||
12 1 0.0 3.33529 22.57874 20.68991
|
||||
13 1 0.0 4.19726 23.80080 0.33508
|
||||
14 1 0.0 6.68129 23.69266 23.13075
|
||||
15 3 0.0 3.09410 12.02471 16.65602
|
||||
16 2 0.0 4.53790 11.22867 16.12595
|
||||
17 2 0.0 1.98216 12.79921 15.59862
|
||||
18 2 0.0 2.94350 12.44420 18.32254
|
||||
19 1 0.0 5.24401 10.77330 16.61803
|
||||
20 1 0.0 1.10176 13.19382 15.77157
|
||||
21 1 0.0 2.24435 12.85961 18.85529
|
||||
22 3 0.0 11.46014 6.57998 19.54155
|
||||
23 2 0.0 11.41247 7.36935 21.07367
|
||||
24 2 0.0 12.10967 5.02110 19.27082
|
||||
25 2 0.0 10.74290 7.40346 18.15014
|
||||
26 1 0.0 11.04310 8.22526 21.35875
|
||||
27 1 0.0 12.23932 4.47293 18.47557
|
||||
28 1 0.0 10.67373 7.10685 17.22712
|
||||
29 3 0.0 11.08460 12.33864 19.28104
|
||||
30 2 0.0 11.34836 13.23119 20.73896
|
||||
31 2 0.0 9.92831 11.10473 19.09894
|
||||
32 2 0.0 12.09164 12.69825 17.89278
|
||||
33 1 0.0 11.96775 13.94859 20.96031
|
||||
34 1 0.0 9.68067 10.50031 18.37427
|
||||
35 1 0.0 12.10206 12.31962 16.99755
|
||||
36 3 0.0 16.30156 8.77946 9.35117
|
||||
37 2 0.0 14.89172 7.88636 9.75359
|
||||
38 2 0.0 16.88966 9.02164 7.73765
|
||||
39 2 0.0 17.49737 9.08373 10.64053
|
||||
40 1 0.0 14.48147 7.61584 10.59321
|
||||
41 1 0.0 17.67137 9.46163 7.36999
|
||||
42 1 0.0 18.17147 9.79838 10.64156
|
||||
43 3 0.0 5.13212 13.69884 22.13154
|
||||
44 2 0.0 5.48279 12.35370 23.11195
|
||||
45 2 0.0 5.09394 13.69454 20.44390
|
||||
46 2 0.0 4.66841 15.19478 22.89478
|
||||
47 1 0.0 5.62303 12.19015 24.06195
|
||||
48 1 0.0 4.81388 14.30156 19.73513
|
||||
49 1 0.0 4.45081 16.06980 22.52921
|
||||
50 3 0.0 20.66764 3.98511 5.60363
|
||||
51 2 0.0 19.99184 2.40263 5.50286
|
||||
52 2 0.0 20.51708 5.02486 6.95773
|
||||
53 2 0.0 21.60880 4.57878 4.24996
|
||||
54 1 0.0 20.00878 1.72191 4.80697
|
||||
55 1 0.0 20.82035 5.93286 7.13931
|
||||
56 1 0.0 22.07480 5.42038 4.11310
|
||||
57 3 0.0 8.85743 19.34284 21.52754
|
||||
58 2 0.0 7.27070 20.01992 21.47027
|
||||
59 2 0.0 9.69182 18.97544 22.97169
|
||||
60 2 0.0 9.65070 18.93927 20.02944
|
||||
61 1 0.0 6.71593 20.32474 20.72955
|
||||
62 1 0.0 10.56063 18.57499 23.16295
|
||||
63 1 0.0 10.51934 18.54777 19.83721
|
||||
64 3 0.0 23.51972 10.47305 17.25322
|
||||
65 2 0.0 23.97098 11.96260 18.04948
|
||||
66 2 0.0 24.54307 9.59907 16.22117
|
||||
67 2 0.0 21.90294 9.84477 17.50180
|
||||
68 1 0.0 23.46396 12.52267 18.66351
|
||||
69 1 0.0 24.45997 8.77863 15.69939
|
||||
70 1 0.0 21.46999 9.04903 17.14619
|
||||
71 3 0.0 5.60291 10.17273 2.44803
|
||||
72 2 0.0 7.16694 9.77649 3.07411
|
||||
73 2 0.0 4.24384 10.54236 3.41008
|
||||
74 2 0.0 5.39786 10.28750 0.72616
|
||||
75 1 0.0 8.00942 9.55137 2.64434
|
||||
76 1 0.0 3.31957 10.78047 3.20702
|
||||
77 1 0.0 4.62129 10.42132 0.15716
|
||||
78 3 0.0 16.37311 9.22286 18.09708
|
||||
79 2 0.0 15.78190 8.64503 16.57376
|
||||
80 2 0.0 16.64835 8.23357 19.45928
|
||||
81 2 0.0 16.63400 10.94106 18.29447
|
||||
82 1 0.0 15.62322 9.10143 15.72854
|
||||
83 1 0.0 16.95513 8.40601 20.36893
|
||||
84 1 0.0 16.95257 11.45993 19.05240
|
||||
85 3 0.0 5.28764 18.69912 13.31319
|
||||
86 2 0.0 5.98620 20.03778 12.47788
|
||||
87 2 0.0 5.53460 18.35154 14.97223
|
||||
88 2 0.0 4.20516 17.64051 12.43642
|
||||
89 1 0.0 5.91944 20.34771 11.55794
|
||||
90 1 0.0 5.23156 17.63037 15.55409
|
||||
91 1 0.0 3.72069 16.84340 12.70885
|
||||
92 3 0.0 14.77099 20.78362 11.41422
|
||||
93 2 0.0 14.16229 20.18810 9.91169
|
||||
94 2 0.0 15.97692 21.98487 11.56211
|
||||
95 2 0.0 14.12859 20.12000 12.89882
|
||||
96 1 0.0 13.48968 19.51852 9.69561
|
||||
97 1 0.0 16.41268 22.41296 12.32187
|
||||
98 1 0.0 14.32168 20.31720 13.83061
|
||||
99 3 0.0 1.41350 6.47339 10.98887
|
||||
100 2 0.0 3.11373 6.73061 10.88875
|
||||
101 2 0.0 0.51986 6.36995 12.45155
|
||||
102 2 0.0 0.51098 6.26826 9.49521
|
||||
103 1 0.0 3.72376 6.83273 10.13691
|
||||
104 1 0.0 24.57790 6.21134 12.64347
|
||||
105 1 0.0 24.56896 6.08899 9.34052
|
|
@ -0,0 +1,160 @@
|
|||
Reactive MD-force field: Fe/O/water: Aryanpour, M.; van Duin, A. C. T.; Kubicki, J. D. J. Phys. Chem. A 2010, 114, 6298-6307
|
||||
39 ! Number of general parameters
|
||||
50.0000 !Overcoordination parameter
|
||||
9.5469 !Overcoordination parameter
|
||||
1.6725 !Valency angle conjugation parameter
|
||||
1.7224 !Triple bond stabilisation parameter
|
||||
6.8702 !Triple bond stabilisation parameter
|
||||
60.4850 !C2-correction
|
||||
1.0588 !Undercoordination parameter
|
||||
4.6000 !Triple bond stabilisation parameter
|
||||
12.1176 !Undercoordination parameter
|
||||
13.3056 !Undercoordination parameter
|
||||
-55.1978 !Triple bond stabilization energy
|
||||
0.0000 !Lower Taper-radius
|
||||
10.0000 !Upper Taper-radius
|
||||
2.8793 !Not used
|
||||
33.8667 !Valency undercoordination
|
||||
6.0891 !Valency angle/lone pair parameter
|
||||
1.0563 !Valency angle
|
||||
2.0384 !Valency angle parameter
|
||||
6.1431 !Not used
|
||||
6.9290 !Double bond/angle parameter
|
||||
0.3989 !Double bond/angle parameter: overcoord
|
||||
3.9954 !Double bond/angle parameter: overcoord
|
||||
-2.4837 !Not used
|
||||
5.7796 !Torsion/BO parameter
|
||||
10.0000 !Torsion overcoordination
|
||||
1.9487 !Torsion overcoordination
|
||||
-1.2327 !Conjugation 0 (not used)
|
||||
2.1645 !Conjugation
|
||||
1.5591 !vdWaals shielding
|
||||
0.1000 !Cutoff for bond order (*100)
|
||||
1.7602 !Valency angle conjugation parameter
|
||||
0.6991 !Overcoordination parameter
|
||||
50.0000 !Overcoordination parameter
|
||||
1.8512 !Valency/lone pair parameter
|
||||
0.5000 !Not used
|
||||
20.0000 !Not used
|
||||
5.0000 !Molecular energy (not used)
|
||||
0.0000 !Molecular energy (not used)
|
||||
0.7903 !Valency angle conjugation parameter
|
||||
4 ! Nr of atoms; cov.r; valency;a.m;Rvdw;Evdw;gammaEEM;cov.r2;#
|
||||
alfa;gammavdW;valency;Eunder;Eover;chiEEM;etaEEM;n.u.
|
||||
cov r3;Elp;Heat inc.;n.u.;n.u.;n.u.;n.u.
|
||||
ov/un;val1;n.u.;val3,vval4
|
||||
C 1.3817 4.0000 12.0000 1.8903 0.1838 0.9000 1.1341 4.0000
|
||||
9.7559 2.1346 4.0000 34.9350 79.5548 5.9666 7.0000 0.0000
|
||||
1.2114 0.0000 202.6057 8.9539 34.9289 13.5366 0.8563 0.0000
|
||||
-2.8983 2.5000 1.0564 4.0000 2.9663 0.0000 0.0000 0.0000
|
||||
H 0.8930 1.0000 1.0080 1.3550 0.0930 0.8203 -0.1000 1.0000
|
||||
8.2230 33.2894 1.0000 0.0000 121.1250 3.7248 9.6093 1.0000
|
||||
-0.1000 0.0000 61.6606 3.0408 2.4197 0.0003 1.0698 0.0000
|
||||
-19.4571 4.2733 1.0338 1.0000 2.8793 0.0000 0.0000 0.0000
|
||||
O 1.2450 2.0000 15.9990 2.3890 0.1000 1.0898 1.0548 6.0000
|
||||
9.7300 13.8449 4.0000 37.5000 116.0768 8.5000 8.3122 2.0000
|
||||
0.9049 0.4056 59.0626 3.5027 0.7640 0.0021 0.9745 0.0000
|
||||
-3.5500 2.9000 1.0493 4.0000 2.9225 0.0000 0.0000 0.0000
|
||||
Fe 1.9506 3.0000 55.8450 2.0308 0.1274 0.7264 -1.0000 3.0000
|
||||
11.0534 2.2637 3.0000 0.0000 18.3725 1.2457 7.3021 0.0000
|
||||
-1.2000 0.0000 66.4838 30.0000 1.0000 0.0000 0.8563 0.0000
|
||||
-16.2040 2.7917 1.0338 6.0000 2.5791 0.0000 0.0000 0.0000
|
||||
10 ! Nr of bonds; Edis1;LPpen;n.u.;pbe1;pbo5;13corr;pbo6
|
||||
pbe2;pbo3;pbo4;Etrip;pbo1;pbo2;ovcorr
|
||||
1 1 158.2004 99.1897 78.0000 -0.7738 -0.4550 1.0000 37.6117 0.4147
|
||||
0.4590 -0.1000 9.1628 1.0000 -0.0777 6.7268 1.0000 0.0000
|
||||
1 2 169.4760 0.0000 0.0000 -0.6083 0.0000 1.0000 6.0000 0.7652
|
||||
5.2290 1.0000 0.0000 1.0000 -0.0500 6.9136 0.0000 0.0000
|
||||
2 2 153.3934 0.0000 0.0000 -0.4600 0.0000 1.0000 6.0000 0.7300
|
||||
6.2500 1.0000 0.0000 1.0000 -0.0790 6.0552 0.0000 0.0000
|
||||
1 3 164.4303 82.6772 60.8077 -0.3739 -0.2351 1.0000 10.5036 1.0000
|
||||
0.4475 -0.2288 7.0250 1.0000 -0.1363 4.8734 0.0000 0.0000
|
||||
3 3 142.2858 145.0000 50.8293 0.2506 -0.1000 1.0000 29.7503 0.6051
|
||||
0.3451 -0.1055 9.0000 1.0000 -0.1225 5.5000 1.0000 0.0000
|
||||
2 3 160.0000 0.0000 0.0000 -0.5725 0.0000 1.0000 6.0000 0.5626
|
||||
1.1150 1.0000 0.0000 0.0000 -0.0920 4.2790 0.0000 0.0000
|
||||
1 4 133.0514 0.0000 0.0000 1.0000 -0.3000 1.0000 36.0000 0.0673
|
||||
0.2350 -0.3500 15.0000 1.0000 -0.1143 4.5217 1.0000 0.0000
|
||||
2 4 105.0054 0.0000 0.0000 -0.0717 0.0000 0.0000 6.0000 0.0505
|
||||
0.1000 1.0000 0.0000 1.0000 -0.1216 4.5062 0.0000 0.0000
|
||||
3 4 65.7713 0.0000 0.0000 0.1366 -0.3000 1.0000 36.0000 0.0494
|
||||
0.9495 -0.3500 15.0000 1.0000 -0.0555 7.9897 1.0000 0.0000
|
||||
4 4 38.7471 0.0000 0.0000 0.3595 -0.2000 0.0000 16.0000 0.2749
|
||||
1.0000 -0.2000 15.0000 1.0000 -0.0771 6.4477 0.0000 0.0000
|
||||
6 ! Nr of off-diagonal terms; Ediss;Ro;gamma;rsigma;rpi;rpi2
|
||||
1 2 0.1239 1.4004 9.8467 1.1210 -1.0000 -1.0000
|
||||
2 3 0.0283 1.2885 10.9190 0.9215 -1.0000 -1.0000
|
||||
1 3 0.1345 1.8422 9.7725 1.2835 1.1576 1.0637
|
||||
1 4 0.1358 1.8293 10.0425 1.6096 -1.0000 -1.0000
|
||||
2 4 0.0640 1.6974 11.5167 1.3517 -1.0000 -1.0000
|
||||
3 4 0.0846 1.4284 10.0808 1.8339 -1.0000 -1.0000
|
||||
37 ! Nr of angles;at1;at2;at3;Thetao,o;ka;kb;pv1;pv2
|
||||
1 1 1 59.0573 30.7029 0.7606 0.0000 0.7180 6.2933 1.1244
|
||||
1 1 2 65.7758 14.5234 6.2481 0.0000 0.5665 0.0000 1.6255
|
||||
2 1 2 70.2607 25.2202 3.7312 0.0000 0.0050 0.0000 2.7500
|
||||
1 2 2 0.0000 0.0000 6.0000 0.0000 0.0000 0.0000 1.0400
|
||||
1 2 1 0.0000 3.4110 7.7350 0.0000 0.0000 0.0000 1.0400
|
||||
2 2 2 0.0000 27.9213 5.8635 0.0000 0.0000 0.0000 1.0400
|
||||
1 1 3 53.9517 7.8968 2.6122 0.0000 3.0000 58.6562 1.0338
|
||||
3 1 3 76.9627 44.2852 2.4177 -25.3063 1.6334 -50.0000 2.7392
|
||||
2 1 3 65.0000 16.3141 5.2730 0.0000 0.4448 0.0000 1.4077
|
||||
1 3 1 72.6199 42.5510 0.7205 0.0000 2.9294 0.0000 1.3096
|
||||
1 3 3 81.9029 32.2258 1.7397 0.0000 0.9888 68.1072 1.7777
|
||||
3 3 3 80.7324 30.4554 0.9953 0.0000 3.0000 50.0000 1.0783
|
||||
1 3 2 70.1101 13.1217 4.4734 0.0000 0.8433 0.0000 3.0000
|
||||
2 3 3 75.6935 50.0000 2.0000 0.0000 1.0000 0.0000 1.1680
|
||||
2 3 2 85.8000 9.8453 2.2720 0.0000 2.8635 0.0000 1.5800
|
||||
1 2 3 0.0000 25.0000 3.0000 0.0000 1.0000 0.0000 1.0400
|
||||
3 2 3 0.0000 15.0000 2.8900 0.0000 0.0000 0.0000 2.8774
|
||||
2 2 3 0.0000 8.5744 3.0000 0.0000 0.0000 0.0000 1.0421
|
||||
1 4 1 29.1655 3.3035 0.2000 0.0000 1.1221 0.0000 1.0562
|
||||
1 1 4 59.8697 2.8115 1.9262 0.0000 0.7602 0.0000 1.4056
|
||||
1 4 4 25.4591 15.9430 0.9664 0.0000 2.2242 0.0000 1.1088
|
||||
4 1 4 88.6279 26.0015 1.0328 0.0000 0.2361 0.0000 2.0576
|
||||
2 1 4 47.3695 16.9204 4.1052 0.0000 0.1000 0.0000 1.0050
|
||||
2 4 2 34.1965 6.6782 6.5943 0.0000 1.3895 0.0000 1.5365
|
||||
2 2 4 0.1000 30.0000 3.4094 0.0000 2.4379 0.0000 1.5166
|
||||
4 2 4 0.0000 8.2994 5.7832 0.0000 2.9873 0.0000 1.7716
|
||||
2 4 4 21.2590 6.5954 0.9951 0.0000 2.8006 0.0000 1.0000
|
||||
2 4 4 180.0000 -6.9970 24.3956 0.0000 0.7878 0.0000 1.3672
|
||||
1 3 4 90.0000 12.8684 1.4601 0.0000 0.8757 0.0000 1.0000
|
||||
3 1 4 18.8567 24.3753 3.9647 0.0000 0.1000 0.0000 1.5314
|
||||
3 4 3 79.7335 0.0100 0.1392 0.0000 0.4968 0.0000 2.1948
|
||||
4 3 4 57.6787 4.8566 2.5768 0.0000 0.7552 0.0000 1.0000
|
||||
2 3 4 59.4556 10.2025 0.7481 0.0000 1.4521 0.0000 1.0000
|
||||
3 3 4 73.6721 32.6330 1.7223 0.0000 1.0221 0.0000 1.4351
|
||||
3 4 4 65.7545 5.6268 4.0645 0.0000 1.7794 0.0000 2.6730
|
||||
3 2 4 0.0000 4.6026 2.5343 0.0000 0.7284 0.0000 1.1051
|
||||
2 4 3 34.0653 20.1868 4.7461 0.0000 0.1000 0.0000 1.6752
|
||||
29 ! Nr of torsions;at1;at2;at3;at4;;V1;V2;V3;V2(BO);vconj;n.u;n
|
||||
1 1 1 1 -0.2500 34.7453 0.0288 -6.3507 -1.6000 0.0000 0.0000
|
||||
1 1 1 2 -0.2500 29.2131 0.2945 -4.9581 -2.1802 0.0000 0.0000
|
||||
2 1 1 2 -0.2500 31.2081 0.4539 -4.8923 -2.2677 0.0000 0.0000
|
||||
1 1 1 3 1.2799 20.7787 -0.5249 -2.5000 -1.0000 0.0000 0.0000
|
||||
2 1 1 3 1.9159 19.8113 0.7914 -4.6995 -1.0000 0.0000 0.0000
|
||||
3 1 1 3 -1.4477 16.6853 0.6461 -4.9622 -1.0000 0.0000 0.0000
|
||||
1 1 3 1 0.4816 19.6316 -0.0057 -2.5000 -1.0000 0.0000 0.0000
|
||||
1 1 3 2 1.2044 80.0000 -0.3139 -6.1481 -1.0000 0.0000 0.0000
|
||||
2 1 3 1 -2.5000 31.0191 0.6165 -2.7733 -2.9807 0.0000 0.0000
|
||||
2 1 3 2 -2.4875 70.8145 0.7582 -4.2274 -3.0000 0.0000 0.0000
|
||||
1 1 3 3 -0.3566 10.0000 0.0816 -2.6110 -1.9631 0.0000 0.0000
|
||||
2 1 3 3 -1.4383 80.0000 1.0000 -3.6877 -2.8000 0.0000 0.0000
|
||||
3 1 3 1 -1.1390 78.0747 -0.0964 -4.5172 -3.0000 0.0000 0.0000
|
||||
3 1 3 2 -2.5000 70.3345 -1.0000 -5.5315 -3.0000 0.0000 0.0000
|
||||
3 1 3 3 -2.0234 80.0000 0.1684 -3.1568 -2.6174 0.0000 0.0000
|
||||
1 3 3 1 1.1637 -17.3637 0.5459 -3.6005 -2.6938 0.0000 0.0000
|
||||
1 3 3 2 -2.1289 12.8382 1.0000 -5.6657 -2.9759 0.0000 0.0000
|
||||
2 3 3 2 2.5000 -22.9397 0.6991 -3.3961 -1.0000 0.0000 0.0000
|
||||
1 3 3 3 2.5000 -25.0000 1.0000 -2.5000 -1.0000 0.0000 0.0000
|
||||
2 3 3 3 -2.5000 -2.5103 -1.0000 -2.5000 -1.0000 0.0000 0.0000
|
||||
3 3 3 3 -2.5000 -25.0000 1.0000 -2.5000 -1.0000 0.0000 0.0000
|
||||
0 1 2 0 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000
|
||||
0 2 2 0 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000
|
||||
0 2 3 0 0.0000 0.1000 0.0200 -2.5415 0.0000 0.0000 0.0000
|
||||
0 1 1 0 0.0000 50.0000 0.3000 -4.0000 -2.0000 0.0000 0.0000
|
||||
0 3 3 0 0.5511 25.4150 1.1330 -5.1903 -1.0000 0.0000 0.0000
|
||||
1 1 3 3 -0.0002 20.1851 0.1601 -9.0000 -2.0000 0.0000 0.0000
|
||||
1 3 3 1 0.0002 80.0000 -1.5000 -4.4848 -2.0000 0.0000 0.0000
|
||||
3 1 3 3 -0.1583 20.0000 1.5000 -9.0000 -2.0000 0.0000 0.0000
|
||||
1 ! Nr of hydrogen bonds;at1;at2;at3;Rhb;Dehb;vhb1
|
||||
3 2 3 2.1200 -3.5800 1.4500 19.5000
|
|
@ -0,0 +1,23 @@
|
|||
# REAX potential for Fe/O/H system
|
||||
# .....
|
||||
|
||||
units real
|
||||
|
||||
atom_style charge
|
||||
read_data data.FeOH3
|
||||
|
||||
pair_style reax/c lmp_control
|
||||
pair_coeff * * ffield.reax.Fe_O_C_H H O Fe
|
||||
|
||||
neighbor 2 bin
|
||||
neigh_modify every 10 delay 0 check no
|
||||
|
||||
fix 1 all nve
|
||||
fix 2 all qeq/reax 1 0.0 10.0 1e-6 param.qeq
|
||||
fix 3 all temp/berendsen 500.0 500.0 100.0
|
||||
|
||||
timestep 0.25
|
||||
|
||||
#dump 1 all atom 30 dump.reax.feoh
|
||||
|
||||
run 3000
|
|
@ -0,0 +1,17 @@
|
|||
simulation_name FeOH3_example ! output files will carry this name + their specific ext
|
||||
|
||||
tabulate_long_range 10000 ! denotes the granularity of long range tabulation, 0 means no tabulation
|
||||
energy_update_freq 1
|
||||
|
||||
nbrhood_cutoff 4.5 ! near neighbors cutoff for bond calculations in A
|
||||
hbond_cutoff 6.0 ! cutoff distance for hydrogen bond interactions
|
||||
bond_graph_cutoff 0.3 ! bond strength cutoff for bond graphs
|
||||
thb_cutoff 0.001 ! cutoff value for three body interactions
|
||||
|
||||
write_freq 1 ! write trajectory after so many steps
|
||||
traj_title Fe_OH3 ! (no white spaces)
|
||||
atom_info 1 ! 0: no atom info, 1: print basic atom info in the trajectory file
|
||||
atom_forces 1 ! 0: basic atom format, 1: print force on each atom in the trajectory file
|
||||
atom_velocities 0 ! 0: basic atom format, 1: print the velocity of each atom in the trajectory file
|
||||
bond_info 1 ! 0: do not print bonds, 1: print bonds in the trajectory file
|
||||
angle_info 1 ! 0: do not print angles, 1: print angles in the trajectory file
|
|
@ -0,0 +1,3 @@
|
|||
1 3.7248 19.2186 0.8203
|
||||
2 8.5000 16.6244 1.0898
|
||||
3 1.2457 14.6042 0.7264
|
|
@ -0,0 +1,40 @@
|
|||
Disclaimer: Using these force fields for systems they
|
||||
have not been explicitly trained against may produce
|
||||
unrealistic results. Please see the README file in
|
||||
each subdirectory for more detailed information.
|
||||
|
||||
RDX/High Energy C/H/O/N:
|
||||
|
||||
The follow information is reproduced from:
|
||||
|
||||
"Strachan, A.; van Duin, A. C. T.; Chakraborty, D.;
|
||||
Dasgupta, S.; Goddard III, W. A. Phys. Rev. Lett.
|
||||
2003, 91, 098301"
|
||||
|
||||
"Strachan, A.; Kober, E.; van Duin, A. C. T.;
|
||||
Oxgaard, J.; Goddard III, W. A. J. Chem. Phys.
|
||||
2005, 122, 054502"
|
||||
|
||||
"Zhang, L.; van Duin, A.C.T.; Zybin, S.;
|
||||
Goddard, W.A. J. Phys. Chem. B 2009, 113, 10770-10778"
|
||||
|
||||
"Zhang, L.; Zybin, S.; van Duin, A.C.T.; Dasgupta, S.;
|
||||
Goddard, W.A.; Kober, E. J. Phys. Chem. A. 2009,
|
||||
113, 10619-10640"
|
||||
|
||||
- The parameters of the nitramine ReaxFF are based
|
||||
on a large number of ab initio QM calculations.
|
||||
Over 40 reactions and over 1600 equilibrated molecules
|
||||
have been used; they are designed to characterize
|
||||
the atomic interactions under various environments
|
||||
likely and unlikely high energy each atom can encounter.
|
||||
The training set contains bond breaking and compression
|
||||
curves for all possible bonds, angle and torsion bending
|
||||
data for all possible cases, as well as crystal
|
||||
data.
|
||||
|
||||
- Please see the supplemental material from
|
||||
Phys. Rev. Lett. 2003, 91, 098301
|
||||
for a detailed description of the
|
||||
parameterization of this force field.
|
||||
|
|
@ -0,0 +1,123 @@
|
|||
# RDX example
|
||||
|
||||
105 atoms
|
||||
4 atom types
|
||||
|
||||
0 25.000 xlo xhi
|
||||
0 25.000 ylo yhi
|
||||
0 25.000 zlo zhi
|
||||
|
||||
Masses
|
||||
|
||||
1 1.0080
|
||||
2 12.0107
|
||||
3 15.9994
|
||||
4 14.0067
|
||||
|
||||
Atoms
|
||||
|
||||
1 2 0.0 14.70747 14.63296 9.00078
|
||||
2 4 0.0 14.75209 14.82706 10.48551
|
||||
3 2 0.0 16.08626 14.66861 11.14801
|
||||
4 4 0.0 17.12170 13.78716 10.51955
|
||||
5 2 0.0 17.04682 13.61313 9.03355
|
||||
6 4 0.0 15.72698 13.75678 8.33970
|
||||
7 4 0.0 13.70357 13.95851 11.17372
|
||||
8 4 0.0 17.16997 12.43180 11.21817
|
||||
9 4 0.0 15.13478 12.38723 8.02188
|
||||
10 3 0.0 12.62896 13.62099 10.53217
|
||||
11 3 0.0 13.83977 13.66206 12.42825
|
||||
12 3 0.0 16.82023 12.33906 12.46289
|
||||
13 3 0.0 17.66680 11.40779 10.59764
|
||||
14 3 0.0 15.92308 11.37429 7.84061
|
||||
15 3 0.0 13.85940 12.27085 7.82144
|
||||
16 1 0.0 13.68156 14.38512 8.65830
|
||||
17 1 0.0 14.86042 15.64132 8.56730
|
||||
18 1 0.0 16.53138 15.68341 11.16029
|
||||
19 1 0.0 15.97457 14.44920 12.22991
|
||||
20 1 0.0 17.69011 14.41034 8.61081
|
||||
21 1 0.0 17.57332 12.69163 8.70975
|
||||
22 2 0.0 3.36149 0.85818 22.25391
|
||||
23 4 0.0 4.29015 1.45411 23.26712
|
||||
24 2 0.0 5.74921 1.45638 22.92772
|
||||
25 4 0.0 6.29203 0.41356 21.99929
|
||||
26 2 0.0 5.33619 24.83726 21.00015
|
||||
27 4 0.0 3.87094 24.81178 21.31073
|
||||
28 4 0.0 4.05868 0.83226 24.64084
|
||||
29 4 0.0 6.98470 24.30334 22.78351
|
||||
30 4 0.0 3.44230 23.42075 21.76753
|
||||
31 3 0.0 2.89169 0.35364 24.93982
|
||||
32 3 0.0 4.99347 0.89125 0.53699
|
||||
33 3 0.0 7.50875 24.56580 23.93971
|
||||
34 3 0.0 7.14388 23.13739 22.23984
|
||||
35 3 0.0 4.09644 22.38053 21.35482
|
||||
36 3 0.0 2.36102 23.28086 22.46865
|
||||
37 1 0.0 2.40372 0.54739 22.72003
|
||||
38 1 0.0 3.04434 1.70393 21.61188
|
||||
39 1 0.0 5.93246 2.42528 22.42195
|
||||
40 1 0.0 6.37424 1.54698 23.84001
|
||||
41 1 0.0 5.43492 0.47260 20.09754
|
||||
42 1 0.0 5.68639 23.85112 20.63130
|
||||
43 2 0.0 5.15008 14.27075 16.08622
|
||||
44 4 0.0 4.09420 15.20855 16.58603
|
||||
45 2 0.0 3.92027 15.30093 18.07104
|
||||
46 4 0.0 4.29094 14.13174 18.93110
|
||||
47 2 0.0 5.34851 13.21298 18.40049
|
||||
48 4 0.0 5.54406 13.09043 16.92035
|
||||
49 4 0.0 2.75847 14.92758 15.90470
|
||||
50 4 0.0 3.04761 13.34492 19.33408
|
||||
51 4 0.0 4.88840 11.81712 16.39491
|
||||
52 3 0.0 2.74084 14.40258 14.71964
|
||||
53 3 0.0 1.65772 15.32101 16.46502
|
||||
54 3 0.0 1.90378 13.94960 19.41349
|
||||
55 3 0.0 3.16329 12.10774 19.70337
|
||||
56 3 0.0 4.75708 10.79296 17.17883
|
||||
57 3 0.0 4.57293 11.72857 15.14074
|
||||
58 1 0.0 4.95906 13.97394 15.03430
|
||||
59 1 0.0 6.06811 14.88424 15.99204
|
||||
60 1 0.0 4.58442 16.12697 18.39458
|
||||
61 1 0.0 2.91579 15.69160 18.33484
|
||||
62 1 0.0 6.30641 13.60900 18.79230
|
||||
63 1 0.0 5.29326 12.21519 18.88294
|
||||
64 2 0.0 13.05017 9.27453 21.06302
|
||||
65 4 0.0 13.22363 8.73253 19.67727
|
||||
66 2 0.0 12.46841 9.42196 18.58256
|
||||
67 4 0.0 11.19480 10.14168 18.90515
|
||||
68 2 0.0 11.05337 10.66891 20.30016
|
||||
69 4 0.0 11.78824 9.99842 21.42019
|
||||
70 4 0.0 12.95863 7.23041 19.64978
|
||||
71 4 0.0 9.98593 9.29169 18.52622
|
||||
72 4 0.0 10.85140 9.08952 22.20989
|
||||
73 3 0.0 13.15446 6.52488 20.71943
|
||||
74 3 0.0 12.65239 6.65389 18.52986
|
||||
75 3 0.0 10.08724 8.42350 17.56895
|
||||
76 3 0.0 8.83919 9.52316 19.08441
|
||||
77 3 0.0 9.58446 9.35972 22.25629
|
||||
78 3 0.0 11.34338 8.12396 22.92120
|
||||
79 1 0.0 13.30695 8.51270 21.82781
|
||||
80 1 0.0 13.86236 10.01731 21.19243
|
||||
81 1 0.0 13.15621 10.19964 18.19477
|
||||
82 1 0.0 12.34371 8.75964 17.70106
|
||||
83 1 0.0 11.44941 11.70333 20.26572
|
||||
84 1 0.0 9.98790 10.83504 20.56091
|
||||
85 2 0.0 19.51848 5.12365 5.80007
|
||||
86 4 0.0 19.97495 6.54940 5.74510
|
||||
87 2 0.0 20.89012 6.92320 4.61959
|
||||
88 4 0.0 21.76730 5.87657 4.00380
|
||||
89 2 0.0 21.28205 4.46126 4.07818
|
||||
90 4 0.0 20.37198 4.05135 5.19524
|
||||
91 4 0.0 20.56721 6.97708 7.08440
|
||||
92 4 0.0 23.19172 5.98569 4.53905
|
||||
93 4 0.0 21.14957 3.30814 6.27705
|
||||
94 3 0.0 20.17218 6.39776 8.17469
|
||||
95 3 0.0 21.37277 7.99145 7.13448
|
||||
96 3 0.0 23.63632 7.13187 4.95003
|
||||
97 3 0.0 23.98190 4.96020 4.47319
|
||||
98 3 0.0 22.22095 2.65104 5.95961
|
||||
99 3 0.0 20.67169 3.24305 7.48024
|
||||
100 1 0.0 19.18861 4.84621 6.82250
|
||||
101 1 0.0 18.56668 5.09719 5.23312
|
||||
102 1 0.0 20.22614 7.26910 3.80257
|
||||
103 1 0.0 21.46600 7.84127 4.85745
|
||||
104 1 0.0 20.69928 4.30046 3.14942
|
||||
105 1 0.0 22.11866 3.74259 3.95659
|
|
@ -0,0 +1,156 @@
|
|||
Reactive MD-force field nitramines (RDX/HMX/TATB/PETN): Strachan, A.; et al. Phys. Rev. Lett. 2003, 91, 098301
|
||||
39 ! Number of general parameters
|
||||
50.0000 !Overcoordination parameter
|
||||
9.4514 !Overcoordination parameter
|
||||
30.0000 !Valency angle conjugation parameter
|
||||
216.4305 !Triple bond stabilisation parameter
|
||||
12.4838 !Triple bond stabilisation parameter
|
||||
0.0000 !C2-correction
|
||||
1.0701 !Undercoordination parameter
|
||||
7.5000 !Triple bond stabilisation parameter
|
||||
11.9083 !Undercoordination parameter
|
||||
13.3822 !Undercoordination parameter
|
||||
-10.4637 !Triple bond stabilization energy
|
||||
0.0000 !Lower Taper-radius
|
||||
10.0000 !Upper Taper-radius
|
||||
2.8793 !Not used
|
||||
33.8667 !Valency undercoordination
|
||||
3.5895 !Valency angle/lone pair parameter
|
||||
1.0563 !Valency angle
|
||||
2.0384 !Valency angle parameter
|
||||
6.1431 !Not used
|
||||
6.9290 !Double bond/angle parameter
|
||||
0.0283 !Double bond/angle parameter: overcoord
|
||||
0.0570 !Double bond/angle parameter: overcoord
|
||||
-2.4837 !Not used
|
||||
5.8374 !Torsion/BO parameter
|
||||
10.0000 !Torsion overcoordination
|
||||
1.8820 !Torsion overcoordination
|
||||
-1.2327 !Conjugation 0 (not used)
|
||||
2.1861 !Conjugation
|
||||
1.5591 !vdWaals shielding
|
||||
0.0100 !Cutoff for bond order (*100)
|
||||
5.2216 !Valency angle conjugation parameter
|
||||
3.4021 !Overcoordination parameter
|
||||
38.5241 !Overcoordination parameter
|
||||
2.1533 !Valency/lone pair parameter
|
||||
0.5000 !Not used
|
||||
20.0000 !Not used
|
||||
5.0000 !Molecular energy (not used)
|
||||
2.0000 !Version number
|
||||
6.5560 !Valency angle conjugation parameter
|
||||
4 ! Nr of atoms; cov.r; valency;a.m;Rvdw;Evdw;gammaEEM;cov.r2;#
|
||||
alfa;gammavdW;valency;Eunder;Eover;chiEEM;etaEEM;n.u.
|
||||
cov r3;Elp;Heat inc.;n.u.;n.u.;n.u.;n.u.
|
||||
ov/un;val1;n.u.;val3,vval4
|
||||
C 1.3742 4.0000 12.0000 1.9684 0.1723 0.8712 1.2385 4.0000
|
||||
9.4606 2.1346 4.0000 31.0823 79.5548 5.7254 6.9235 0.0000
|
||||
1.2104 0.0000 183.7012 5.7419 33.3951 11.9957 0.8563 0.0000
|
||||
-2.8983 2.5000 1.0564 4.0000 2.9663 0.0000 0.0000 0.0000
|
||||
H 0.6867 1.0000 1.0080 1.3525 0.0616 0.8910 -0.1000 1.0000
|
||||
9.3858 5.0013 1.0000 0.0000 121.1250 3.8446 10.0839 1.0000
|
||||
-0.1000 0.0000 58.4228 3.8461 3.2540 1.0000 1.0698 0.0000
|
||||
-15.7683 2.1504 1.0338 1.0000 2.8793 0.0000 0.0000 0.0000
|
||||
O 1.3142 2.0000 15.9990 1.9741 0.0880 0.8712 1.1139 6.0000
|
||||
10.2186 7.7719 4.0000 29.5271 116.0768 8.5000 7.1412 2.0000
|
||||
0.9909 14.9473 69.2812 9.1371 1.6258 0.1863 0.9745 0.0000
|
||||
-3.5965 2.5000 1.0493 4.0000 2.9225 0.0000 0.0000 0.0000
|
||||
N 1.2450 3.0000 14.0000 1.9951 0.1088 1.0512 1.1911 5.0000
|
||||
9.9303 7.8431 4.0000 32.4758 100.0000 6.7768 6.8035 2.0000
|
||||
1.0636 0.1045 128.0119 2.1604 2.9464 2.5181 0.9745 0.0000
|
||||
-4.0959 2.0047 1.0183 4.0000 2.8793 0.0000 0.0000 0.0000
|
||||
10 ! Nr of bonds; Edis1;LPpen;n.u.;pbe1;pbo5;13corr;pbo6
|
||||
pbe2;pbo3;pbo4;Etrip;pbo1;pbo2;ovcorr
|
||||
1 1 141.9346 113.4487 67.6027 0.1554 -0.3045 1.0000 30.4515 0.4283
|
||||
0.0801 -0.2113 8.5395 1.0000 -0.0933 6.6967 1.0000 0.0000
|
||||
1 2 163.6889 0.0000 0.0000 -0.4525 0.0000 1.0000 6.0000 0.5921
|
||||
12.1053 1.0000 0.0000 1.0000 -0.0097 8.6351 0.0000 0.0000
|
||||
2 2 169.8421 0.0000 0.0000 -0.3591 0.0000 1.0000 6.0000 0.7503
|
||||
9.3119 1.0000 0.0000 1.0000 -0.0169 5.9406 0.0000 0.0000
|
||||
1 3 164.0476 117.4881 72.1261 -0.6031 -0.1795 1.0000 14.9755 0.5413
|
||||
1.2626 -0.3063 7.0000 1.0000 -0.1588 4.5000 0.0000 0.0000
|
||||
3 3 110.4748 155.6441 40.0000 0.1150 -0.1054 1.0000 28.5221 0.2000
|
||||
0.9590 -0.2635 8.5715 1.0000 -0.1007 6.8548 1.0000 0.0000
|
||||
1 4 130.7147 175.2276 97.2523 -0.0368 -0.4942 1.0000 26.7545 0.5133
|
||||
0.3296 -0.3653 7.0000 1.0000 -0.1171 5.1025 1.0000 0.0000
|
||||
3 4 85.4950 114.0081 70.1453 0.5778 -0.1070 1.0000 16.6611 0.2339
|
||||
0.3474 -0.1948 8.3762 1.0000 -0.1089 5.8148 1.0000 0.0000
|
||||
4 4 157.7518 67.1322 160.9732 -0.5869 -0.1824 1.0000 12.0000 0.7136
|
||||
0.8204 -0.1657 10.6490 1.0000 -0.0967 4.5976 1.0000 0.0000
|
||||
2 3 224.3076 0.0000 0.0000 -0.6280 0.0000 1.0000 6.0000 1.0000
|
||||
5.0050 1.0000 0.0000 1.0000 -0.0512 5.1982 0.0000 0.0000
|
||||
2 4 212.1772 0.0000 0.0000 -0.3585 0.0000 1.0000 6.0000 0.3316
|
||||
10.4316 1.0000 0.0000 1.0000 -0.0658 6.4545 0.0000 0.0000
|
||||
6 ! Nr of off-diagonal terms; Ediss;Ro;gamma;rsigma;rpi;rpi2
|
||||
1 2 0.0464 1.8296 10.1311 1.0029 -1.0000 -1.0000
|
||||
2 3 0.0375 1.7275 10.8037 0.8813 -1.0000 -1.0000
|
||||
2 4 0.0509 1.7672 10.4261 0.9990 -1.0000 -1.0000
|
||||
1 3 0.1036 1.8869 9.5668 1.3590 1.1099 1.1534
|
||||
1 4 0.1971 1.7356 10.0734 1.2754 1.2113 1.1172
|
||||
3 4 0.0535 1.6709 10.8180 1.2968 1.1416 1.0167
|
||||
42 ! Nr of angles;at1;at2;at3;Thetao,o;ka;kb;pv1;pv2
|
||||
1 1 1 74.0317 32.2712 0.9501 0.0000 0.1780 10.5736 1.0400
|
||||
1 1 2 70.6558 14.3658 5.3224 0.0000 0.0058 0.0000 1.0400
|
||||
2 1 2 76.7339 14.4217 3.3631 0.0000 0.0127 0.0000 1.0400
|
||||
1 2 2 0.0000 0.0000 6.0000 0.0000 0.0000 0.0000 1.0400
|
||||
1 2 1 0.0000 3.4110 7.7350 0.0000 0.0000 0.0000 1.0400
|
||||
2 2 2 0.0000 27.9213 5.8635 0.0000 0.0000 0.0000 1.0400
|
||||
1 1 3 65.3104 6.3897 7.5000 0.0000 0.2000 10.0000 1.8525
|
||||
3 1 3 71.9855 28.5708 6.4252 0.0000 0.2000 0.0000 1.8525
|
||||
1 1 4 65.8892 45.0000 1.6598 0.0000 0.2000 10.0000 1.8525
|
||||
3 1 4 73.1057 25.8227 4.2145 0.0000 0.2000 0.0000 1.8525
|
||||
4 1 4 65.8759 40.9838 2.4369 0.0000 0.2000 0.0000 1.8525
|
||||
2 1 3 56.3039 17.3681 5.3095 0.0000 0.9110 0.0000 1.0400
|
||||
2 1 4 71.5505 11.1820 3.7129 0.0000 0.9110 0.0000 1.0400
|
||||
1 2 4 0.0000 0.0019 6.3000 0.0000 0.0000 0.0000 1.0400
|
||||
1 3 1 72.3642 37.8942 1.1566 0.0000 0.7472 0.0000 1.2639
|
||||
1 3 3 90.0000 45.0000 0.5719 0.0000 0.7472 0.0000 1.2639
|
||||
1 3 4 70.4313 14.4055 7.1593 0.0000 0.7472 0.0000 1.2639
|
||||
3 3 3 83.8833 23.3345 2.3433 -10.0000 0.7472 0.0000 1.2639
|
||||
3 3 4 84.0407 45.0000 1.0695 0.0000 0.7472 0.0000 1.2639
|
||||
4 3 4 73.9966 24.4410 5.2760 0.0000 0.7472 0.0000 1.2639
|
||||
1 3 2 89.1394 37.0874 0.3849 0.0000 3.0000 0.0000 1.2618
|
||||
2 3 3 80.7068 5.0854 5.7151 0.0000 3.0000 0.0000 1.2618
|
||||
2 3 4 76.0238 45.0000 0.8637 0.0000 3.0000 0.0000 1.2618
|
||||
2 3 2 82.3474 13.5165 3.4896 0.0000 0.3596 0.0000 1.3307
|
||||
1 4 1 68.4330 19.3525 2.1625 0.0000 1.7325 0.0000 1.0440
|
||||
1 4 3 86.2893 37.5587 1.2660 0.0000 1.7325 0.0000 1.0440
|
||||
1 4 4 74.2404 12.0547 7.5000 0.0000 1.7325 0.0000 1.0440
|
||||
3 4 3 78.5566 43.8492 1.3351 -26.1471 1.7325 40.0000 1.0440
|
||||
3 4 4 77.4239 33.7297 1.7944 -0.9193 1.7325 0.0000 1.0440
|
||||
4 4 4 64.9107 17.5558 7.5000 0.0000 1.7325 0.0000 1.0440
|
||||
1 4 2 90.0000 32.0540 0.7195 0.0000 0.5355 0.0000 2.5279
|
||||
2 4 3 84.1185 45.0000 1.3826 0.0000 0.5355 0.0000 2.5279
|
||||
2 4 4 78.7133 24.6250 3.8202 0.0000 0.5355 0.0000 2.5279
|
||||
2 4 2 56.3036 14.1532 3.3914 0.0000 0.2000 0.0000 2.1689
|
||||
1 2 3 0.0000 0.0019 6.0000 0.0000 0.0000 0.0000 1.0400
|
||||
1 2 4 0.0000 0.0019 6.0000 0.0000 0.0000 0.0000 1.0400
|
||||
1 2 5 0.0000 0.0019 6.0000 0.0000 0.0000 0.0000 1.0400
|
||||
3 2 3 0.0000 0.0019 6.0000 0.0000 0.0000 0.0000 1.0400
|
||||
3 2 4 0.0000 0.0019 6.0000 0.0000 0.0000 0.0000 1.0400
|
||||
4 2 4 0.0000 0.0019 6.0000 0.0000 0.0000 0.0000 1.0400
|
||||
2 2 3 0.0000 0.0019 6.0000 0.0000 0.0000 0.0000 1.0400
|
||||
2 2 4 0.0000 0.0019 6.0000 0.0000 0.0000 0.0000 1.0400
|
||||
17 ! Nr of torsions;at1;at2;at3;at4;;V1;V2;V3;V2(BO);vconj;n.u;n
|
||||
1 1 1 1 0.0000 48.4194 0.3163 -8.6506 -1.7255 0.0000 0.0000
|
||||
1 1 1 2 0.0000 63.3484 0.2210 -8.8401 -1.8081 0.0000 0.0000
|
||||
2 1 1 2 0.0000 45.2741 0.4171 -6.9800 -1.2359 0.0000 0.0000
|
||||
0 1 2 0 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000
|
||||
0 2 2 0 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000
|
||||
0 1 3 0 -0.0002 85.8794 0.3236 -3.8134 -2.0000 0.0000 0.0000
|
||||
0 2 3 0 0.0000 0.1000 0.0200 -2.5415 0.0000 0.0000 0.0000
|
||||
0 3 3 0 -0.9667 116.4743 0.0002 -4.9422 0.0000 0.0000 0.0000
|
||||
0 1 4 0 -0.0069 150.0000 0.4891 -7.4921 -2.0000 0.0000 0.0000
|
||||
0 2 4 0 0.0000 0.1000 0.0200 -2.5415 0.0000 0.0000 0.0000
|
||||
0 3 4 0 1.6745 56.6301 -0.0008 -4.5064 -2.0000 0.0000 0.0000
|
||||
0 4 4 0 1.1253 75.3447 0.0080 -9.0000 -2.0000 0.0000 0.0000
|
||||
0 1 1 0 0.0930 18.5962 0.0002 -9.0000 -1.0000 0.0000 0.0000
|
||||
4 1 4 4 -2.0000 20.8732 -1.5000 -9.0000 -2.0000 0.0000 0.0000
|
||||
1 1 3 3 -0.0002 21.5452 0.1727 -9.0000 -2.0000 0.0000 0.0000
|
||||
1 3 3 1 0.0002 79.3777 -1.5000 -5.2139 -2.0000 0.0000 0.0000
|
||||
3 1 3 3 -1.3476 22.4932 1.5000 -9.0000 -2.0000 0.0000 0.0000
|
||||
4 ! Nr of hydrogen bonds;at1;at2;at3;Rhb;Dehb;vhb1
|
||||
3 2 3 2.0000 -5.0000 3.0000 3.0000
|
||||
3 2 4 1.7753 -5.0000 3.0000 3.0000
|
||||
4 2 3 1.3884 -5.0000 3.0000 3.0000
|
||||
4 2 4 1.6953 -4.0695 3.0000 3.0000
|
|
@ -0,0 +1,23 @@
|
|||
# REAX potential for high energy CHON systems
|
||||
# .....
|
||||
|
||||
units real
|
||||
|
||||
atom_style charge
|
||||
read_data data.RDX
|
||||
|
||||
pair_style reax/c lmp_control
|
||||
pair_coeff * * ffield.reax.rdx H C O N
|
||||
|
||||
neighbor 2 bin
|
||||
neigh_modify every 10 delay 0 check no
|
||||
|
||||
fix 1 all nve
|
||||
fix 2 all qeq/reax 1 0.0 10.0 1e-6 param.qeq
|
||||
fix 3 all temp/berendsen 500.0 500.0 100.0
|
||||
|
||||
timestep 0.25
|
||||
|
||||
#dump 1 all atom 30 dump.reax.rdx
|
||||
|
||||
run 3000
|
|
@ -0,0 +1,17 @@
|
|||
simulation_name RDX_example ! output files will carry this name + their specific ext
|
||||
|
||||
tabulate_long_range 10000 ! denotes the granularity of long range tabulation, 0 means no tabulation
|
||||
energy_update_freq 1
|
||||
|
||||
nbrhood_cutoff 4.5 ! near neighbors cutoff for bond calculations in A
|
||||
hbond_cutoff 6.0 ! cutoff distance for hydrogen bond interactions
|
||||
bond_graph_cutoff 0.3 ! bond strength cutoff for bond graphs
|
||||
thb_cutoff 0.001 ! cutoff value for three body interactions
|
||||
|
||||
write_freq 1 ! write trajectory after so many steps
|
||||
traj_title RDX ! (no white spaces)
|
||||
atom_info 1 ! 0: no atom info, 1: print basic atom info in the trajectory file
|
||||
atom_forces 1 ! 0: basic atom format, 1: print force on each atom in the trajectory file
|
||||
atom_velocities 0 ! 0: basic atom format, 1: print the velocity of each atom in the trajectory file
|
||||
bond_info 1 ! 0: do not print bonds, 1: print bonds in the trajectory file
|
||||
angle_info 1 ! 0: do not print angles, 1: print angles in the trajectory file
|
|
@ -0,0 +1,4 @@
|
|||
1 3.8446 20.1678 0.8910
|
||||
2 5.7254 13.8470 0.8712
|
||||
3 8.5000 14.2824 0.8712
|
||||
4 6.7768 13.6070 1.0512
|
|
@ -0,0 +1,21 @@
|
|||
Disclaimer: Using these force fields for systems they
|
||||
have not been explicitly trained against may produce
|
||||
unrealistic results. Please see the README file in
|
||||
each subdirectory for more detailed information.
|
||||
|
||||
V/O
|
||||
The follow information is reproduced from:
|
||||
|
||||
"Chenoweth, K.; van Duin A.C.T.; Persson, P.;
|
||||
Cheng M.J.; Oxgaard, J.; Goddard W.A.
|
||||
J. Phys. Chem. C, 2008, 112, 14645-14654."
|
||||
|
||||
- The ReaxFF force field parameters have been fit
|
||||
to a large quantum mechanics (QM) training set containing over 700
|
||||
structures and energetics related to bond dissociations, angle
|
||||
and dihedral distortions, and reactions between hydrocarbons
|
||||
and vanadium oxide clusters. In addition, the training set
|
||||
contains charge distributions for small vanadium oxide clusters
|
||||
and the stabilities of condensed-phase systems
|
||||
including V2O5, VO2, and V2O3 in addition to metallic V (V0).
|
||||
|
|
@ -0,0 +1,118 @@
|
|||
# VOH example
|
||||
|
||||
100 atoms
|
||||
4 atom types
|
||||
|
||||
0 25.000 xlo xhi
|
||||
0 25.000 ylo yhi
|
||||
0 25.000 zlo zhi
|
||||
|
||||
Masses
|
||||
|
||||
1 1.0080
|
||||
2 12.0107
|
||||
3 15.9994
|
||||
4 50.9415
|
||||
|
||||
Atoms
|
||||
|
||||
1 2 0.0 12.35333 12.56112 11.08925
|
||||
2 4 0.0 12.32916 12.62071 13.13099
|
||||
3 3 0.0 14.09425 12.56218 13.76130
|
||||
4 3 0.0 11.42814 11.10330 13.76732
|
||||
5 3 0.0 11.63260 13.89286 13.64097
|
||||
6 1 0.0 10.61647 11.29221 14.30535
|
||||
7 1 0.0 14.38026 13.34626 14.29055
|
||||
8 1 0.0 11.32479 12.58820 10.70253
|
||||
9 1 0.0 12.90918 13.42567 10.69612
|
||||
10 1 0.0 12.84043 11.63643 10.74688
|
||||
11 2 0.0 0.93670 23.74637 24.45218
|
||||
12 4 0.0 2.18151 24.36876 0.94725
|
||||
13 3 0.0 3.93452 24.44779 0.28384
|
||||
14 3 0.0 2.13668 23.10529 2.33362
|
||||
15 3 0.0 1.76108 0.74666 1.48323
|
||||
16 1 0.0 1.82070 23.45305 3.20745
|
||||
17 1 0.0 4.35555 0.34186 0.31083
|
||||
18 1 0.0 24.90472 23.68735 24.82586
|
||||
19 1 0.0 0.97611 24.45631 23.61244
|
||||
20 1 0.0 1.24583 22.75250 24.09589
|
||||
21 2 0.0 2.25730 12.18969 18.74792
|
||||
22 4 0.0 0.67140 13.31162 19.37385
|
||||
23 3 0.0 0.71106 13.43250 21.24545
|
||||
24 3 0.0 24.08603 12.44025 18.87949
|
||||
25 3 0.0 0.70486 14.71920 18.75808
|
||||
26 1 0.0 23.49516 12.95430 18.26686
|
||||
27 1 0.0 0.79723 14.34808 21.60818
|
||||
28 1 0.0 2.24383 12.10285 17.65239
|
||||
29 1 0.0 3.19860 12.66607 19.06030
|
||||
30 1 0.0 2.20214 11.18299 19.18774
|
||||
31 2 0.0 9.32237 8.16220 23.74501
|
||||
32 4 0.0 9.41775 7.26178 21.91463
|
||||
33 3 0.0 8.54752 8.34565 20.65588
|
||||
34 3 0.0 8.50942 5.62151 22.00137
|
||||
35 3 0.0 10.87539 7.02683 21.48455
|
||||
36 1 0.0 9.06507 4.82324 21.80615
|
||||
37 1 0.0 9.11458 8.67119 19.91477
|
||||
38 1 0.0 9.82196 7.53487 24.49616
|
||||
39 1 0.0 9.81855 9.14254 23.70532
|
||||
40 1 0.0 8.27176 8.30387 24.03831
|
||||
41 2 0.0 9.10113 13.98748 23.44281
|
||||
42 4 0.0 8.84954 12.89163 21.73780
|
||||
43 3 0.0 10.01387 13.54293 20.42005
|
||||
44 3 0.0 7.08992 13.11522 21.12954
|
||||
45 3 0.0 9.12937 11.39982 21.99065
|
||||
46 1 0.0 6.55309 12.28287 21.08224
|
||||
47 1 0.0 10.67858 12.89258 20.08249
|
||||
48 1 0.0 8.42108 13.62252 24.22498
|
||||
49 1 0.0 10.13926 13.89766 23.79639
|
||||
50 1 0.0 8.88118 15.04646 23.24289
|
||||
51 2 0.0 17.73225 3.40708 8.28945
|
||||
52 4 0.0 18.49877 5.29835 8.37599
|
||||
53 3 0.0 19.48472 5.62627 6.81505
|
||||
54 3 0.0 19.66498 5.40961 9.84118
|
||||
55 3 0.0 17.38120 6.34466 8.51889
|
||||
56 1 0.0 19.41208 6.07779 10.52927
|
||||
57 1 0.0 19.15960 6.37609 6.25924
|
||||
58 1 0.0 17.15579 3.19557 9.20103
|
||||
59 1 0.0 17.07197 3.31049 7.41454
|
||||
60 1 0.0 18.54903 2.67524 8.20436
|
||||
61 2 0.0 5.18346 20.97409 24.28840
|
||||
62 4 0.0 7.06396 20.17968 24.34847
|
||||
63 3 0.0 7.63220 19.82889 22.59578
|
||||
64 3 0.0 7.00272 18.55243 0.28036
|
||||
65 3 0.0 8.05085 21.13715 0.03620
|
||||
66 1 0.0 7.56109 18.51690 1.09952
|
||||
67 1 0.0 8.44257 20.31624 22.30833
|
||||
68 1 0.0 4.83239 21.17976 0.30904
|
||||
69 1 0.0 5.19182 21.91237 23.71419
|
||||
70 1 0.0 4.49282 20.26573 23.80772
|
||||
71 2 0.0 21.82701 12.79861 20.63056
|
||||
72 4 0.0 21.27646 11.09990 19.63611
|
||||
73 3 0.0 19.52930 10.64327 20.13923
|
||||
74 3 0.0 22.41924 9.70346 20.14638
|
||||
75 3 0.0 21.34556 11.30206 18.11274
|
||||
76 1 0.0 22.94464 9.30084 19.40876
|
||||
77 1 0.0 18.86743 10.62817 19.40629
|
||||
78 1 0.0 22.85378 13.07853 20.35349
|
||||
79 1 0.0 21.14666 13.62206 20.37063
|
||||
80 1 0.0 21.78702 12.62668 21.71522
|
||||
81 2 0.0 4.84801 10.63893 5.85720
|
||||
82 4 0.0 2.99668 11.06158 5.10490
|
||||
83 3 0.0 3.09505 11.09458 3.23258
|
||||
84 3 0.0 2.48053 12.76555 5.69567
|
||||
85 3 0.0 1.96195 10.01780 5.55634
|
||||
86 1 0.0 1.65323 12.78746 6.24245
|
||||
87 1 0.0 2.52753 10.43264 2.76734
|
||||
88 1 0.0 4.80984 10.62196 6.95551
|
||||
89 1 0.0 5.18492 9.65688 5.49273
|
||||
90 1 0.0 5.56737 11.40648 5.53568
|
||||
91 2 0.0 13.58126 9.47098 19.40329
|
||||
92 4 0.0 14.17691 10.17243 21.22692
|
||||
93 3 0.0 14.44428 12.02521 21.10583
|
||||
94 3 0.0 15.81206 9.37183 21.67632
|
||||
95 3 0.0 13.12907 9.86545 22.30960
|
||||
96 1 0.0 15.80034 8.83149 22.50703
|
||||
97 1 0.0 13.87232 12.57457 21.69672
|
||||
98 1 0.0 13.42563 8.38456 19.45392
|
||||
99 1 0.0 12.63978 9.95672 19.10431
|
||||
100 1 0.0 14.35123 9.68789 18.64825
|
|
@ -0,0 +1,166 @@
|
|||
Reactive MD-force field: V/O/C/H potential: Chenoweth, K.; et al. J. Phys. Chem. C, 2008, 112, 14645-14654.
|
||||
39 ! Number of general parameters
|
||||
50.0000 !Overcoordination parameter
|
||||
9.5469 !Overcoordination parameter
|
||||
26.5405 !Valency angle conjugation parameter
|
||||
1.5105 !Triple bond stabilisation parameter
|
||||
6.6630 !Triple bond stabilisation parameter
|
||||
0.0000 !C2-correction
|
||||
1.0588 !Undercoordination parameter
|
||||
4.6000 !Triple bond stabilisation parameter
|
||||
12.1176 !Undercoordination parameter
|
||||
13.3056 !Undercoordination parameter
|
||||
-70.1292 !Triple bond stabilization energy
|
||||
0.0000 !Lower Taper-radius
|
||||
10.0000 !Upper Taper-radius
|
||||
2.8793 !Not used
|
||||
33.8667 !Valency undercoordination
|
||||
6.0891 !Valency angle/lone pair parameter
|
||||
1.0563 !Valency angle
|
||||
2.0384 !Valency angle parameter
|
||||
6.1431 !Not used
|
||||
6.9290 !Double bond/angle parameter
|
||||
0.3989 !Double bond/angle parameter: overcoord
|
||||
3.9954 !Double bond/angle parameter: overcoord
|
||||
-2.4837 !Not used
|
||||
5.7796 !Torsion/BO parameter
|
||||
10.0000 !Torsion overcoordination
|
||||
1.9487 !Torsion overcoordination
|
||||
-1.2327 !Conjugation 0 (not used)
|
||||
2.1645 !Conjugation
|
||||
1.5591 !vdWaals shielding
|
||||
0.1000 !Cutoff for bond order (*100)
|
||||
2.1365 !Valency angle conjugation parameter
|
||||
0.6991 !Overcoordination parameter
|
||||
50.0000 !Overcoordination parameter
|
||||
1.8512 !Valency/lone pair parameter
|
||||
0.5000 !Not used
|
||||
20.0000 !Not used
|
||||
5.0000 !Molecular energy (not used)
|
||||
0.0000 !Molecular energy (not used)
|
||||
2.6962 !Valency angle conjugation parameter
|
||||
5 ! Nr of atoms; cov.r; valency;a.m;Rvdw;Evdw;gammaEEM;cov.r2;#
|
||||
alfa;gammavdW;valency;Eunder;Eover;chiEEM;etaEEM;n.u.
|
||||
cov r3;Elp;Heat inc.;n.u.;n.u.;n.u.;n.u.
|
||||
ov/un;val1;n.u.;val3,vval4
|
||||
C 1.3825 4.0000 12.0000 1.9133 0.1853 0.9000 1.1359 4.0000
|
||||
9.7602 2.1346 4.0000 33.2433 79.5548 5.8678 7.0000 0.0000
|
||||
1.2104 0.0000 199.0303 8.6991 34.7289 13.3894 0.8563 0.0000
|
||||
-2.8983 2.5000 1.0564 4.0000 2.9663 0.0000 0.0000 0.0000
|
||||
H 0.7853 1.0000 1.0080 1.5904 0.0419 1.0206 -0.1000 1.0000
|
||||
9.3557 5.0518 1.0000 0.0000 121.1250 5.3200 7.4366 1.0000
|
||||
-0.1000 0.0000 62.4879 1.9771 3.3517 0.7571 1.0698 0.0000
|
||||
-15.7683 2.1488 1.0338 1.0000 2.8793 0.0000 0.0000 0.0000
|
||||
O 1.2477 2.0000 15.9990 1.9236 0.0904 1.0503 1.0863 6.0000
|
||||
10.2127 7.7719 4.0000 36.9573 116.0768 8.5000 8.9989 2.0000
|
||||
0.9088 1.0003 60.8726 20.4140 3.3754 0.2702 0.9745 0.0000
|
||||
-3.6141 2.7025 1.0493 4.0000 2.9225 0.0000 0.0000 0.0000
|
||||
V 2.3008 3.0000 50.9415 1.8842 0.2471 0.5518 0.1000 5.0000
|
||||
12.3750 5.2538 3.0000 0.0000 0.0000 2.1056 5.4975 0.0000
|
||||
-1.0000 0.0000 117.6300 23.2444 6.5966 1.0000 0.8563 0.0000
|
||||
-3.2973 2.3344 1.0338 6.0000 3.6411 0.0000 0.0000 0.0000
|
||||
X -0.1000 2.0000 1.0080 2.0000 0.0000 1.0000 -0.1000 6.0000
|
||||
10.0000 2.5000 4.0000 0.0000 0.0000 8.5000 1.5000 0.0000
|
||||
-0.1000 0.0000 -2.3700 8.7410 13.3640 0.6690 0.9745 0.0000
|
||||
-11.0000 2.7466 1.0338 6.2998 2.8793 0.0000 0.0000 0.0000
|
||||
10 ! Nr of bonds; Edis1;LPpen;n.u.;pbe1;pbo5;13corr;pbo6
|
||||
pbe2;pbo3;pbo4;n.u.;pbo1;pbo2;ovcorr
|
||||
1 1 156.5953 100.0397 80.0000 -0.8157 -0.4591 1.0000 37.7369 0.4235
|
||||
0.4527 -0.1000 9.2605 1.0000 -0.0750 6.8316 1.0000 0.0000
|
||||
1 2 170.2316 0.0000 0.0000 -0.5931 0.0000 1.0000 6.0000 0.7140
|
||||
5.2267 1.0000 0.0000 1.0000 -0.0500 6.8315 0.0000 0.0000
|
||||
2 2 156.0973 0.0000 0.0000 -0.1377 0.0000 1.0000 6.0000 0.8240
|
||||
2.9907 1.0000 0.0000 1.0000 -0.0593 4.8358 0.0000 0.0000
|
||||
1 3 160.4802 105.1693 23.3059 -0.3873 -0.1613 1.0000 10.8851 1.0000
|
||||
0.5341 -0.3174 7.0303 1.0000 -0.1463 5.2913 0.0000 0.0000
|
||||
3 3 60.1463 176.6202 51.1430 -0.2802 -0.1244 1.0000 29.6439 0.9114
|
||||
0.2441 -0.1239 7.6487 1.0000 -0.1302 6.2919 1.0000 0.0000
|
||||
2 3 180.4373 0.0000 0.0000 -0.8074 0.0000 1.0000 6.0000 0.5514
|
||||
1.2490 1.0000 0.0000 1.0000 -0.0657 5.0451 0.0000 0.0000
|
||||
4 4 36.0707 0.0000 0.0000 0.1764 -0.3000 0.0000 16.0000 0.1020
|
||||
0.0350 -0.3000 16.0000 1.0000 -0.0587 8.4813 0.0000 0.0000
|
||||
3 4 137.8828 56.4570 0.0000 0.0310 -0.3000 1.0000 36.0000 0.2355
|
||||
0.7943 -0.2977 15.9401 1.0000 -0.1952 5.0015 1.0000 0.0000
|
||||
2 4 112.6739 0.0000 0.0000 0.1669 -0.3000 0.0000 36.0000 0.0751
|
||||
-0.4510 -0.2500 20.0000 1.0000 -0.0822 6.4179 0.0000 0.0000
|
||||
1 4 130.2004 0.0000 0.0000 -0.3153 -0.3000 1.0000 36.0000 0.6315
|
||||
0.9750 -0.2500 20.0000 1.0000 -0.1203 6.5055 1.0000 0.0000
|
||||
6 ! Nr of off-diagonal terms; Ediss;Ro;gamma;rsigma;rpi;rpi2
|
||||
1 2 0.1219 1.4000 9.8442 1.1203 -1.0000 -1.0000
|
||||
2 3 0.0344 1.6800 10.3247 0.9013 -1.0000 -1.0000
|
||||
1 3 0.1131 1.8523 9.8442 1.2775 1.1342 1.0621
|
||||
1 4 0.1005 1.7015 12.0291 1.8429 -1.0000 -1.0000
|
||||
2 4 0.1211 1.6565 10.7328 1.4538 -1.0000 -1.0000
|
||||
3 4 0.0807 1.9659 10.0132 1.6500 1.5900 -1.0000
|
||||
35 ! Nr of angles;at1;at2;at3;Thetao,o;ka;kb;pv1;pv2
|
||||
1 1 1 67.2326 22.0695 1.6286 0.0000 1.7959 15.4141 1.8089
|
||||
1 1 2 65.2527 14.3185 6.2977 0.0000 0.5645 0.0000 1.1530
|
||||
2 1 2 70.0840 25.3540 3.4508 0.0000 0.0050 0.0000 3.0000
|
||||
1 2 2 0.0000 0.0000 6.0000 0.0000 0.0000 0.0000 1.0400
|
||||
1 2 1 0.0000 3.4110 7.7350 0.0000 0.0000 0.0000 1.0400
|
||||
2 2 2 0.0000 27.9213 5.8635 0.0000 0.0000 0.0000 1.0400
|
||||
1 1 3 49.5561 7.3771 4.9568 0.0000 0.7533 15.9906 1.0010
|
||||
3 1 3 77.1171 39.8746 2.5403 -24.3902 1.7740 -42.9758 2.1240
|
||||
2 1 3 65.0000 14.2057 4.8649 0.0000 0.3504 0.0000 1.7185
|
||||
1 3 1 74.3994 44.7500 0.7982 0.0000 3.0000 0.0000 1.0528
|
||||
1 3 3 77.9854 36.6201 2.0201 0.0000 0.7434 67.0264 3.0000
|
||||
3 3 3 80.7324 30.4554 0.9953 0.0000 1.6310 50.0000 1.0783
|
||||
1 3 2 71.5018 21.7062 0.4735 0.0000 0.5186 0.0000 1.1793
|
||||
2 3 3 84.9468 23.3540 1.5057 0.0000 2.6374 0.0000 1.3023
|
||||
2 3 2 77.0645 10.4737 1.2895 0.0000 0.9924 0.0000 1.1043
|
||||
1 2 3 0.0000 5.0000 3.0000 0.0000 1.0000 0.0000 1.5000
|
||||
3 2 3 0.0000 0.0148 6.0000 0.0000 0.0000 0.0000 1.0400
|
||||
2 2 3 0.0000 9.7025 6.0000 0.0000 0.0000 0.0000 1.0400
|
||||
3 4 3 68.9780 25.4118 1.8941 0.0000 2.6245 0.0000 1.0010
|
||||
4 3 4 57.5689 6.3911 5.0236 0.0000 1.0358 0.0000 2.5634
|
||||
3 3 4 54.0069 6.0419 1.1089 0.0000 2.7213 0.0000 1.5000
|
||||
1 3 4 67.7243 5.1160 5.6779 0.0000 1.0536 0.0000 1.0010
|
||||
2 3 4 100.0000 12.7432 1.5773 0.0000 1.3885 0.0000 3.8809
|
||||
3 4 4 22.6212 4.2523 3.3011 0.0000 1.1185 0.0000 2.2035
|
||||
1 1 4 70.0000 14.3983 2.0000 0.0000 1.0000 0.0000 1.2000
|
||||
2 1 4 70.0000 7.0700 2.0000 0.0000 1.0000 0.0000 1.2000
|
||||
3 1 4 70.8486 39.9493 1.8219 0.0000 1.0000 0.0000 1.1696
|
||||
1 2 4 0.0000 5.0000 2.0000 0.0000 1.0000 0.0000 1.2000
|
||||
2 2 4 0.0000 9.0000 2.0000 0.0000 1.0000 0.0000 1.2000
|
||||
3 2 4 0.0000 5.9843 1.8885 0.0000 1.0000 0.0000 1.2456
|
||||
1 4 1 70.0000 23.6766 1.0000 0.0000 1.0000 0.0000 1.2000
|
||||
1 4 2 70.0000 6.0546 1.0000 0.0000 1.0000 0.0000 1.2000
|
||||
1 4 3 64.7486 23.1702 3.0204 0.0000 1.0000 0.0000 1.0937
|
||||
2 4 2 65.0000 11.6200 1.0000 0.0000 1.0000 0.0000 1.2000
|
||||
2 4 3 60.4260 22.5101 3.6090 0.0000 1.0000 0.0000 1.2953
|
||||
33 ! Nr of torsions;at1;at2;at3;at4;;V1;V2;V3;V2(BO);vconj;n.u;n
|
||||
1 1 1 1 -0.2500 11.5822 0.1879 -4.7057 -2.2047 0.0000 0.0000
|
||||
1 1 1 2 -0.2500 31.2596 0.1709 -4.6391 -1.9002 0.0000 0.0000
|
||||
2 1 1 2 -0.1770 30.0252 0.4340 -5.0019 -2.0697 0.0000 0.0000
|
||||
1 1 1 3 -0.7098 22.2951 0.0060 -2.5000 -2.1688 0.0000 0.0000
|
||||
2 1 1 3 -0.3568 22.6472 0.6045 -4.0088 -1.0000 0.0000 0.0000
|
||||
3 1 1 3 -0.0528 6.8150 0.7498 -5.0913 -1.0000 0.0000 0.0000
|
||||
1 1 3 1 2.0007 25.5641 -0.0608 -2.6456 -1.1766 0.0000 0.0000
|
||||
1 1 3 2 -1.1953 42.1545 -1.0000 -8.0821 -1.0000 0.0000 0.0000
|
||||
2 1 3 1 -0.9284 34.3952 0.7285 -2.5440 -2.4641 0.0000 0.0000
|
||||
2 1 3 2 -2.5000 79.6980 1.0000 -3.5697 -2.7501 0.0000 0.0000
|
||||
1 1 3 3 -0.0179 5.0603 -0.1894 -2.5000 -2.0399 0.0000 0.0000
|
||||
2 1 3 3 -0.5583 80.0000 1.0000 -4.4000 -3.0000 0.0000 0.0000
|
||||
3 1 3 1 -2.5000 76.0427 -0.0141 -3.7586 -2.9000 0.0000 0.0000
|
||||
3 1 3 2 0.0345 78.9586 -0.6810 -4.1777 -3.0000 0.0000 0.0000
|
||||
3 1 3 3 -2.5000 66.3525 0.3986 -3.0293 -3.0000 0.0000 0.0000
|
||||
1 3 3 1 2.5000 -0.5332 1.0000 -3.5096 -2.9000 0.0000 0.0000
|
||||
1 3 3 2 -2.5000 3.3219 0.7180 -5.2021 -2.9330 0.0000 0.0000
|
||||
2 3 3 2 2.2500 -6.2288 1.0000 -2.6189 -1.0000 0.0000 0.0000
|
||||
1 3 3 3 0.0531 -17.3983 1.0000 -2.5000 -2.1584 0.0000 0.0000
|
||||
2 3 3 3 0.4723 -12.4144 -1.0000 -2.5000 -1.0000 0.0000 0.0000
|
||||
3 3 3 3 -2.5000 -25.0000 1.0000 -2.5000 -1.0000 0.0000 0.0000
|
||||
0 1 2 0 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000
|
||||
0 2 2 0 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000
|
||||
0 2 3 0 0.0000 0.1000 0.0200 -2.5415 0.0000 0.0000 0.0000
|
||||
0 1 1 0 0.0000 50.0000 0.3000 -4.0000 -2.0000 0.0000 0.0000
|
||||
0 3 3 0 0.5511 25.4150 1.1330 -5.1903 -1.0000 0.0000 0.0000
|
||||
2 3 4 3 0.6439 21.4220 -0.6344 -5.5022 0.0000 0.0000 0.0000
|
||||
1 3 4 3 -0.5000 26.4579 -1.0000 -6.1063 0.0000 0.0000 0.0000
|
||||
1 1 3 4 -0.5000 5.9300 -1.0000 -6.1328 0.0000 0.0000 0.0000
|
||||
2 1 3 4 1.5000 13.6826 0.1478 -2.9478 0.0000 0.0000 0.0000
|
||||
4 3 3 4 -0.0641 59.7588 -1.0000 -3.5975 0.0000 0.0000 0.0000
|
||||
3 3 4 3 1.5000 50.0000 0.3000 -4.5000 0.0000 0.0000 0.0000
|
||||
4 3 4 3 0.0000 0.0000 0.0000 -9.0000 0.0000 0.0000 0.0000
|
||||
1 ! Nr of hydrogen bonds;at1;at2;at3;Rhb;Dehb;vhb1
|
||||
3 2 3 2.1082 -2.5000 3.0000 23.0000
|
|
@ -0,0 +1,23 @@
|
|||
# REAX potential for VOH system
|
||||
# .....
|
||||
|
||||
units real
|
||||
|
||||
atom_style charge
|
||||
read_data data.VOH
|
||||
|
||||
pair_style reax/c lmp_control
|
||||
pair_coeff * * ffield.reax.V_O_C_H H C O V
|
||||
|
||||
neighbor 2 bin
|
||||
neigh_modify every 10 delay 0 check no
|
||||
|
||||
fix 1 all nve
|
||||
fix 2 all qeq/reax 1 0.0 10.0 1e-6 param.qeq
|
||||
fix 3 all temp/berendsen 500.0 500.0 100.0
|
||||
|
||||
timestep 0.25
|
||||
|
||||
#dump 1 all atom 30 dump.reax.voh
|
||||
|
||||
run 3000
|
|
@ -0,0 +1,17 @@
|
|||
simulation_name VOH_example ! output files will carry this name + their specific ext
|
||||
|
||||
tabulate_long_range 10000 ! denotes the granularity of long range tabulation, 0 means no tabulation
|
||||
energy_update_freq 1
|
||||
|
||||
nbrhood_cutoff 4.5 ! near neighbors cutoff for bond calculations in A
|
||||
hbond_cutoff 6.0 ! cutoff distance for hydrogen bond interactions
|
||||
bond_graph_cutoff 0.3 ! bond strength cutoff for bond graphs
|
||||
thb_cutoff 0.001 ! cutoff value for three body interactions
|
||||
|
||||
write_freq 1 ! write trajectory after so many steps
|
||||
traj_title VOH ! (no white spaces)
|
||||
atom_info 1 ! 0: no atom info, 1: print basic atom info in the trajectory file
|
||||
atom_forces 1 ! 0: basic atom format, 1: print force on each atom in the trajectory file
|
||||
atom_velocities 0 ! 0: basic atom format, 1: print the velocity of each atom in the trajectory file
|
||||
bond_info 1 ! 0: do not print bonds, 1: print bonds in the trajectory file
|
||||
angle_info 1 ! 0: do not print angles, 1: print angles in the trajectory file
|
|
@ -0,0 +1,4 @@
|
|||
1 5.3200 14.8732 1.0206
|
||||
2 5.8678 14.0000 0.9000
|
||||
3 8.5000 17.9978 1.0503
|
||||
4 2.1056 10.9950 0.5518
|
|
@ -0,0 +1,28 @@
|
|||
Disclaimer: Using these force fields for systems they
|
||||
have not been explicitly trained against may produce
|
||||
unrealistic results. Please see the README file in
|
||||
each subdirectory for more detailed information.
|
||||
|
||||
Zn/O/H:
|
||||
|
||||
The follow information is reproduced from:
|
||||
|
||||
"Raymand, D.; van Duin A.C.T.; Baudin M.; Hermannson K.
|
||||
Surface Science 2008, 602, 1020-1031."
|
||||
|
||||
"Raymand, D.; van Duin, A. C. T.; Spangberg, D.;
|
||||
Goddard, W. A.; Hermansson, K. Surface Science
|
||||
2010, 604, 9-10, 741-752."
|
||||
|
||||
- Based on QM calculations for Zn(s), ZnO(s),
|
||||
and Zn hydroxide clusters [Zn(OH)2 and O(ZnOH)2],
|
||||
ReaxFF parameters were generated for Zn-O and
|
||||
Zn-Zn bond energies and for Zn-O-Zn, O-Zn-O,
|
||||
O-Zn-Zn and Zn-O-H valence angle energies.
|
||||
|
||||
- QM calculations were performed for the four
|
||||
crystal polymorphs of the wurtzite, zincblende,
|
||||
rocksalt and caesium chloride structures
|
||||
(the structures are also referred to as h-ZnS,
|
||||
c-ZnS, NaCl and CsCl, respectively).
|
||||
|
|
@ -0,0 +1,122 @@
|
|||
# ZnOH2 example
|
||||
|
||||
105 atoms
|
||||
3 atom types
|
||||
|
||||
0 25.000 xlo xhi
|
||||
0 25.000 ylo yhi
|
||||
0 25.000 zlo zhi
|
||||
|
||||
Masses
|
||||
|
||||
1 1.0080
|
||||
2 15.9990
|
||||
3 65.3900
|
||||
|
||||
Atoms
|
||||
|
||||
1 3 0.0 12.11798 12.78280 12.46474
|
||||
2 2 0.0 12.30416 12.56916 14.37979
|
||||
3 2 0.0 12.12265 12.63171 10.53701
|
||||
4 1 0.0 12.91874 13.12536 14.81289
|
||||
5 1 0.0 12.65934 11.96727 10.15577
|
||||
6 3 0.0 1.58040 24.31298 0.61068
|
||||
7 2 0.0 2.91627 24.72949 1.95019
|
||||
8 2 0.0 0.48945 23.71942 24.12667
|
||||
9 1 0.0 3.61429 0.29759 1.69671
|
||||
10 1 0.0 0.67172 22.87315 23.77336
|
||||
11 3 0.0 1.38189 13.21679 18.93974
|
||||
12 2 0.0 24.75026 14.03116 19.59558
|
||||
13 2 0.0 2.72553 11.96082 18.36057
|
||||
14 1 0.0 24.80232 14.58872 20.34549
|
||||
15 1 0.0 2.72772 11.12684 18.78223
|
||||
16 3 0.0 10.28220 7.25838 22.67157
|
||||
17 2 0.0 9.71575 6.56657 20.82008
|
||||
18 2 0.0 9.54424 8.41704 24.03481
|
||||
19 1 0.0 9.49644 7.16185 20.12191
|
||||
20 1 0.0 8.69705 8.28870 24.40622
|
||||
21 3 0.0 8.77480 12.96987 22.47649
|
||||
22 2 0.0 8.66515 12.00764 20.79751
|
||||
23 2 0.0 9.22897 14.11643 23.96904
|
||||
24 1 0.0 9.35719 12.11042 20.17651
|
||||
25 1 0.0 8.94019 15.00536 23.93842
|
||||
26 3 0.0 14.01728 9.20480 11.81342
|
||||
27 2 0.0 15.54778 10.36845 11.59125
|
||||
28 2 0.0 12.30605 8.39415 12.20116
|
||||
29 1 0.0 16.34372 10.11892 12.01518
|
||||
30 1 0.0 11.75428 8.82781 12.82011
|
||||
31 3 0.0 3.31959 14.28210 24.72110
|
||||
32 2 0.0 2.70076 15.80638 23.69735
|
||||
33 2 0.0 3.57881 12.68952 0.78967
|
||||
34 1 0.0 2.87681 16.65260 24.05533
|
||||
35 1 0.0 2.95652 12.53609 1.47088
|
||||
36 3 0.0 18.02652 4.79906 8.51043
|
||||
37 2 0.0 18.94853 6.50297 8.53165
|
||||
38 2 0.0 17.36977 2.99183 8.29669
|
||||
39 1 0.0 19.03997 6.96466 7.72300
|
||||
40 1 0.0 17.99667 2.29846 8.31262
|
||||
41 3 0.0 6.52020 20.57673 24.60168
|
||||
42 2 0.0 8.21127 19.64145 24.44360
|
||||
43 2 0.0 4.74514 21.32679 24.40734
|
||||
44 1 0.0 8.80366 19.92974 23.77942
|
||||
45 1 0.0 4.09966 20.76648 24.02713
|
||||
46 3 0.0 21.56715 11.68831 19.78805
|
||||
47 2 0.0 21.06032 10.04683 18.89933
|
||||
48 2 0.0 21.59033 13.26327 20.91213
|
||||
49 1 0.0 20.14609 9.92081 18.74583
|
||||
50 1 0.0 22.11031 13.23728 21.68877
|
||||
51 3 0.0 3.46476 10.81470 5.54977
|
||||
52 2 0.0 1.81531 11.35666 4.68960
|
||||
53 2 0.0 5.26606 10.43021 6.14328
|
||||
54 1 0.0 1.58282 10.91371 3.89945
|
||||
55 1 0.0 5.91838 11.07051 5.94665
|
||||
56 3 0.0 11.47463 5.52361 20.53283
|
||||
57 2 0.0 12.03967 6.22280 22.37265
|
||||
58 2 0.0 11.86155 4.50111 18.90066
|
||||
59 1 0.0 12.85331 6.71281 22.45500
|
||||
60 1 0.0 12.46688 3.79830 18.92313
|
||||
61 3 0.0 13.84325 9.73776 20.81219
|
||||
62 2 0.0 14.64076 10.58418 22.35938
|
||||
63 2 0.0 13.28566 9.07063 19.08653
|
||||
64 1 0.0 14.24006 11.36576 22.68132
|
||||
65 1 0.0 13.82499 9.29075 18.35388
|
||||
66 3 0.0 3.56971 19.75123 16.14741
|
||||
67 2 0.0 2.61000 18.27004 16.94796
|
||||
68 2 0.0 4.24529 21.22096 15.08479
|
||||
69 1 0.0 2.45624 17.51671 16.41547
|
||||
70 1 0.0 3.64162 21.89789 14.85702
|
||||
71 3 0.0 12.89964 21.66576 13.71630
|
||||
72 2 0.0 13.40113 22.26753 15.48824
|
||||
73 2 0.0 12.08396 20.91476 12.13021
|
||||
74 1 0.0 13.39875 21.63410 16.17637
|
||||
75 1 0.0 11.19771 21.15305 11.95014
|
||||
76 3 0.0 24.61573 7.23215 13.93967
|
||||
77 2 0.0 22.71382 6.90606 14.01512
|
||||
78 2 0.0 1.48982 7.78336 13.53204
|
||||
79 1 0.0 22.29828 6.44977 13.31505
|
||||
80 1 0.0 1.65344 8.71176 13.33278
|
||||
81 3 0.0 17.88434 8.12367 3.54514
|
||||
82 2 0.0 19.27721 9.14063 4.42293
|
||||
83 2 0.0 16.79998 6.83289 2.59685
|
||||
84 1 0.0 19.51530 9.96222 4.04489
|
||||
85 1 0.0 17.23105 6.25138 2.00467
|
||||
86 3 0.0 9.87871 1.60680 24.83330
|
||||
87 2 0.0 9.85901 1.39615 22.90756
|
||||
88 2 0.0 9.46800 1.80406 1.71444
|
||||
89 1 0.0 9.43925 2.06388 22.40490
|
||||
90 1 0.0 8.80208 1.25329 2.07177
|
||||
91 3 0.0 0.78894 6.68436 23.75692
|
||||
92 2 0.0 1.91858 5.41167 24.68689
|
||||
93 2 0.0 24.59213 7.68039 22.60451
|
||||
94 1 0.0 2.54601 4.94359 24.17511
|
||||
95 1 0.0 23.78283 7.26758 22.38117
|
||||
96 3 0.0 3.18381 6.68568 13.82109
|
||||
97 2 0.0 2.57422 5.10796 14.84012
|
||||
98 2 0.0 4.95907 7.17379 13.16284
|
||||
99 1 0.0 2.10641 5.31182 15.62965
|
||||
100 1 0.0 5.47671 6.53998 12.70878
|
||||
101 3 0.0 8.53378 12.86625 3.93332
|
||||
102 2 0.0 10.16990 12.00286 4.50825
|
||||
103 2 0.0 6.71801 13.53392 3.83669
|
||||
104 1 0.0 10.20734 11.07072 4.44278
|
||||
105 1 0.0 6.37259 13.93509 4.60760
|
|
@ -0,0 +1,97 @@
|
|||
Reactive MD-force field: water/zinc: Raymand, D.; van Duin, A. C. T.; Spangberg, D.; Goddard, W. A.; Hermansson, K. Surface Science 2010, 604, 9-10, 741-752.
|
||||
39 ! Number of general parameters
|
||||
50.0000 !Overcoordination parameter
|
||||
9.5469 !Overcoordination parameter
|
||||
26.5405 !Valency angle conjugation parameter
|
||||
1.7224 !Triple bond stabilisation parameter
|
||||
6.8702 !Triple bond stabilisation parameter
|
||||
60.4850 !C2-correction
|
||||
1.0588 !Undercoordination parameter
|
||||
4.6000 !Triple bond stabilisation parameter
|
||||
12.1176 !Undercoordination parameter
|
||||
13.3056 !Undercoordination parameter
|
||||
-70.5044 !Triple bond stabilization energy
|
||||
0.0000 !Lower Taper-radius
|
||||
10.0000 !Upper Taper-radius
|
||||
2.8793 !Not used
|
||||
33.8667 !Valency undercoordination
|
||||
6.0891 !Valency angle/lone pair parameter
|
||||
1.0563 !Valency angle
|
||||
2.0384 !Valency angle parameter
|
||||
6.1431 !Not used
|
||||
6.9290 !Double bond/angle parameter
|
||||
0.3989 !Double bond/angle parameter: overcoord
|
||||
3.9954 !Double bond/angle parameter: overcoord
|
||||
-2.4837 !Not used
|
||||
5.7796 !Torsion/BO parameter
|
||||
10.0000 !Torsion overcoordination
|
||||
1.9487 !Torsion overcoordination
|
||||
-1.2327 !Conjugation 0 (not used)
|
||||
2.1645 !Conjugation
|
||||
1.5591 !vdWaals shielding
|
||||
0.1000 !Cutoff for bond order (*100)
|
||||
2.1365 !Valency angle conjugation parameter
|
||||
0.6991 !Overcoordination parameter
|
||||
50.0000 !Overcoordination parameter
|
||||
1.8512 !Valency/lone pair parameter
|
||||
0.5000 !Not used
|
||||
20.0000 !Not used
|
||||
5.0000 !Molecular energy (not used)
|
||||
0.0000 !Molecular energy (not used)
|
||||
2.6962 !Valency angle conjugation parameter
|
||||
4 ! Nr of atoms; cov.r; valency;a.m;Rvdw;Evdw;gammaEEM;cov.r2;#
|
||||
alfa;gammavdW;valency;Eunder;Eover;chiEEM;etaEEM;n.u.
|
||||
cov r3;Elp;Heat inc.;n.u.;n.u.;n.u.;n.u.
|
||||
ov/un;val1;n.u.;val3,vval4
|
||||
H 0.8930 1.0000 1.0080 1.3550 0.0930 0.8203 -0.1000 1.0000
|
||||
8.2230 33.2894 1.0000 0.0000 121.1250 3.7248 9.6093 1.0000
|
||||
-0.1000 0.0000 61.6606 3.0408 2.4197 0.0003 1.0698 0.0000
|
||||
-19.4571 4.2733 1.0338 1.0000 2.8793 0.0000 0.0000 0.0000
|
||||
O 1.2450 2.0000 15.9990 2.3890 0.1000 1.0898 1.0548 6.0000
|
||||
9.7300 13.8449 4.0000 37.5000 116.0768 8.5000 8.3122 2.0000
|
||||
0.9049 0.4056 59.0626 3.5027 0.7640 0.0021 0.9745 0.0000
|
||||
-3.5500 2.9000 1.0493 4.0000 2.9225 0.0000 0.0000 0.0000
|
||||
Zn 1.8862 2.0000 65.3900 1.9200 0.2998 0.4828 -1.6836 2.0000
|
||||
11.5134 18.3776 2.0000 0.0078 0.0000 2.0219 5.7915 0.0000
|
||||
-1.2000 0.0000 266.4838 5.3430 10.1260 0.7590 0.0000 0.0000
|
||||
-3.0614 2.1158 1.0338 6.2998 2.5791 0.0000 0.0000 0.0000
|
||||
X -0.1000 2.0000 1.0080 2.0000 0.0000 1.0000 -0.1000 6.0000
|
||||
10.0000 2.5000 4.0000 0.0000 0.0000 8.5000 1.5000 0.0000
|
||||
-0.1000 0.0000 -2.3700 8.7410 13.3640 0.6690 0.9745 0.0000
|
||||
-11.0000 2.7466 1.0338 6.2998 2.8793 0.0000 0.0000 0.0000
|
||||
6 ! Nr of bonds; Edis1;LPpen;n.u.;pbe1;pbo5;13corr;pbo6
|
||||
pbe2;pbo3;pbo4;n.u.;pbo1;pbo2;ovcorr
|
||||
1 1 153.3934 0.0000 0.0000 -0.4600 0.0000 1.0000 6.0000 0.7300
|
||||
6.2500 1.0000 0.0000 1.0000 -0.0790 6.0552 0.0000 0.0000
|
||||
2 2 142.2858 145.0000 50.8293 0.2506 -0.1000 1.0000 29.7503 0.6051
|
||||
0.3451 -0.1055 9.0000 1.0000 -0.1225 5.5000 1.0000 0.0000
|
||||
1 2 160.0000 0.0000 0.0000 -0.5725 0.0000 1.0000 6.0000 0.5626
|
||||
1.1150 1.0000 0.0000 0.0000 -0.0920 4.2790 0.0000 0.0000
|
||||
1 3 0.0000 0.0000 0.0000 0.0000 -0.5000 1.0000 50.0000 0.5000
|
||||
0.5000 -0.5000 30.0000 1.0000 -0.2000 8.0000 0.0000 0.0000
|
||||
2 3 159.9755 0.0000 0.0000 -0.4548 -0.5000 0.0000 35.0000 0.0375
|
||||
1.3099 -0.5000 25.0000 0.0000 -0.4787 4.6717 0.0000 0.0000
|
||||
3 3 38.4643 0.0000 0.0000 -0.6944 -0.2000 0.0000 16.0000 0.2129
|
||||
0.5059 -0.2000 15.0000 0.0000 -0.0814 6.0333 0.0000 0.0000
|
||||
3 ! Nr of off-diagonal terms; Ediss;Ro;gamma;rsigma;rpi;rpi2
|
||||
1 2 0.0283 1.2885 10.9190 0.9215 -1.0000 -1.0000
|
||||
2 3 0.2744 2.1414 9.7703 1.9804 -1.0000 -1.0000
|
||||
1 3 0.0987 1.8227 12.0654 0.1000 -1.0000 -1.0000
|
||||
11 ! Nr of angles;at1;at2;at3;Thetao,o;ka;kb;pv1;pv2
|
||||
1 1 1 0.0000 27.9213 5.8635 0.0000 0.0000 0.0000 1.0400
|
||||
2 2 2 80.7324 30.4554 0.9953 0.0000 1.6310 50.0000 1.0783
|
||||
1 2 2 75.6935 50.0000 2.0000 0.0000 1.0000 0.0000 1.1680
|
||||
1 2 1 85.8000 9.8453 2.2720 0.0000 2.8635 0.0000 1.5800
|
||||
2 1 2 0.0000 15.0000 2.8900 0.0000 0.0000 0.0000 2.8774
|
||||
1 1 2 0.0000 8.5744 3.0000 0.0000 0.0000 0.0000 1.0421
|
||||
1 2 3 77.5446 9.9016 2.3157 0.0000 0.4543 0.0000 2.3770
|
||||
2 3 2 10.8790 38.9915 0.7072 0.0000 2.0000 0.0000 2.6162
|
||||
3 2 3 37.5284 32.3525 0.2657 0.0000 0.4403 0.0000 1.1000
|
||||
2 3 3 16.9624 30.3241 0.2697 0.0000 2.0000 0.0000 3.0708
|
||||
2 2 3 60.0000 20.0000 0.5000 0.0000 1.0000 0.0000 2.0000
|
||||
3 ! Nr of torsions;at1;at2;at3;at4;;V1;V2;V3;V2(BO);vconj;n.u;n
|
||||
1 2 2 1 2.2500 -6.2288 1.0000 -2.6189 -1.0000 0.0000 0.0000
|
||||
1 2 2 2 0.4723 -12.4144 -1.0000 -2.5000 -1.0000 0.0000 0.0000
|
||||
2 2 2 2 -2.5000 -25.0000 1.0000 -2.5000 -1.0000 0.0000 0.0000
|
||||
1 ! Nr of hydrogen bonds;at1;at2;at3;Rhb;Dehb;vhb1
|
||||
2 1 2 2.1200 -3.5800 1.4500 19.5000
|
|
@ -0,0 +1,23 @@
|
|||
# REAX potential for ZnOH2 system
|
||||
# .....
|
||||
|
||||
units real
|
||||
|
||||
atom_style charge
|
||||
read_data data.ZnOH2
|
||||
|
||||
pair_style reax/c lmp_control
|
||||
pair_coeff * * ffield.reax.ZnOH H O Zn
|
||||
|
||||
neighbor 2 bin
|
||||
neigh_modify every 10 delay 0 check no
|
||||
|
||||
fix 1 all nve
|
||||
fix 2 all qeq/reax 1 0.0 10.0 1e-6 param.qeq
|
||||
fix 3 all temp/berendsen 500.0 500.0 100.0
|
||||
|
||||
timestep 0.25
|
||||
|
||||
#dump 1 all atom 30 dump.reax.znoh
|
||||
|
||||
run 3000
|
|
@ -0,0 +1,17 @@
|
|||
simulation_name ZnOH2_example ! output files will carry this name + their specific ext
|
||||
|
||||
tabulate_long_range 10000 ! denotes the granularity of long range tabulation, 0 means no tabulation
|
||||
energy_update_freq 1
|
||||
|
||||
nbrhood_cutoff 4.5 ! near neighbors cutoff for bond calculations in A
|
||||
hbond_cutoff 6.0 ! cutoff distance for hydrogen bond interactions
|
||||
bond_graph_cutoff 0.3 ! bond strength cutoff for bond graphs
|
||||
thb_cutoff 0.001 ! cutoff value for three body interactions
|
||||
|
||||
write_freq 1 ! write trajectory after so many steps
|
||||
traj_title ZnOH2 ! (no white spaces)
|
||||
atom_info 1 ! 0: no atom info, 1: print basic atom info in the trajectory file
|
||||
atom_forces 1 ! 0: basic atom format, 1: print force on each atom in the trajectory file
|
||||
atom_velocities 0 ! 0: basic atom format, 1: print the velocity of each atom in the trajectory file
|
||||
bond_info 1 ! 0: do not print bonds, 1: print bonds in the trajectory file
|
||||
angle_info 1 ! 0: do not print angles, 1: print angles in the trajectory file
|
|
@ -0,0 +1,3 @@
|
|||
1 3.7248 19.2186 0.8203
|
||||
2 8.5000 16.6244 1.0898
|
||||
3 2.0219 11.5830 0.4828
|
Loading…
Reference in New Issue