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clean up and update general command overview

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Axel Kohlmeyer 2020-01-11 19:02:49 -05:00
parent d7d1d57170
commit 297d31ab8f
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1 changed files with 51 additions and 45 deletions
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doc/src/Commands_all.rst
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@ -25,26 +25,26 @@ An alphabetic list of all general LAMMPS commands.
* :doc:`atom_style <atom_style>`
* :doc:`balance <balance>`
* :doc:`bond_coeff <bond_coeff>`
* :doc:`bond\_style <bond_style>`
* :doc:`bond\_write <bond_write>`
* :doc:`bond_style <bond_style>`
* :doc:`bond_write <bond_write>`
* :doc:`boundary <boundary>`
* :doc:`box <box>`
* :doc:`change\_box <change_box>`
* :doc:`change_box <change_box>`
* :doc:`clear <clear>`
* :doc:`comm\_modify <comm_modify>`
* :doc:`comm\_style <comm_style>`
* :doc:`comm_modify <comm_modify>`
* :doc:`comm_style <comm_style>`
* :doc:`compute <compute>`
* :doc:`compute\_modify <compute_modify>`
* :doc:`create\_atoms <create_atoms>`
* :doc:`create\_bonds <create_bonds>`
* :doc:`create\_box <create_box>`
* :doc:`delete\_atoms <delete_atoms>`
* :doc:`delete\_bonds <delete_bonds>`
* :doc:`compute_modify <compute_modify>`
* :doc:`create_atoms <create_atoms>`
* :doc:`create_bonds <create_bonds>`
* :doc:`create_box <create_box>`
* :doc:`delete_atoms <delete_atoms>`
* :doc:`delete_bonds <delete_bonds>`
* :doc:`dielectric <dielectric>`
* :doc:`dihedral\_coeff <dihedral_coeff>`
* :doc:`dihedral\_style <dihedral_style>`
* :doc:`dihedral_coeff <dihedral_coeff>`
* :doc:`dihedral_style <dihedral_style>`
* :doc:`dimension <dimension>`
* :doc:`displace\_atoms <displace_atoms>`
* :doc:`displace_atoms <displace_atoms>`
* :doc:`dump <dump>`
* :doc:`dump adios <dump_adios>`
* :doc:`dump image <dump_image>`
@ -52,75 +52,77 @@ An alphabetic list of all general LAMMPS commands.
* :doc:`dump netcdf <dump_netcdf>`
* :doc:`dump netcdf/mpiio <dump_netcdf>`
* :doc:`dump vtk <dump_vtk>`
* :doc:`dump\_modify <dump_modify>`
* :doc:`dynamical\_matrix <dynamical_matrix>`
* :doc:`dump_modify <dump_modify>`
* :doc:`dynamical_matrix <dynamical_matrix>`
* :doc:`echo <echo>`
* :doc:`fix <fix>`
* :doc:`fix\_modify <fix_modify>`
* :doc:`fix_modify <fix_modify>`
* :doc:`group <group>`
* :doc:`group2ndx <group2ndx>`
* :doc:`hyper <hyper>`
* :doc:`if <if>`
* :doc:`improper\_coeff <improper_coeff>`
* :doc:`improper\_style <improper_style>`
* :doc:`improper_coeff <improper_coeff>`
* :doc:`improper_style <improper_style>`
* :doc:`include <include>`
* :doc:`info <info>`
* :doc:`jump <jump>`
* :doc:`kim\_init <kim_commands>`
* :doc:`kim\_interactions <kim_commands>`
* :doc:`kim\_query <kim_commands>`
* :doc:`kspace\_modify <kspace_modify>`
* :doc:`kspace\_style <kspace_style>`
* :doc:`kim_init <kim_commands>`
* :doc:`kim_interactions <kim_commands>`
* :doc:`kim_param <kim_commands>`
* :doc:`kim_query <kim_commands>`
* :doc:`kspace_modify <kspace_modify>`
* :doc:`kspace_style <kspace_style>`
* :doc:`label <label>`
* :doc:`lattice <lattice>`
* :doc:`log <log>`
* :doc:`mass <mass>`
* :doc:`message <message>`
* :doc:`minimize <minimize>`
* :doc:`min\_modify <min_modify>`
* :doc:`min\_style <min_style>`
* :doc:`min\_style spin <min_spin>`
* :doc:`min_modify <min_modify>`
* :doc:`min_style <min_style>`
* :doc:`min_style spin <min_spin>`
* :doc:`molecule <molecule>`
* :doc:`ndx2group <group2ndx>`
* :doc:`neb <neb>`
* :doc:`neb/spin <neb_spin>`
* :doc:`neigh\_modify <neigh_modify>`
* :doc:`neigh_modify <neigh_modify>`
* :doc:`neighbor <neighbor>`
* :doc:`newton <newton>`
* :doc:`next <next>`
* :doc:`package <package>`
* :doc:`pair\_coeff <pair_coeff>`
* :doc:`pair\_modify <pair_modify>`
* :doc:`pair\_write <pair_write>`
* :doc:`pair_coeff <pair_coeff>`
* :doc:`pair_modify <pair_modify>`
* :doc:`pair_write <pair_write>`
* :doc:`partition <partition>`
* :doc:`prd <prd>`
* :doc:`print <print>`
* :doc:`processors <processors>`
* :doc:`python <python>`
* :doc:`quit <quit>`
* :doc:`read\_data <read_data>`
* :doc:`read\_dump <read_dump>`
* :doc:`read\_restart <read_restart>`
* :doc:`read_data <read_data>`
* :doc:`read_dump <read_dump>`
* :doc:`read_restart <read_restart>`
* :doc:`region <region>`
* :doc:`replicate <replicate>`
* :doc:`rerun <rerun>`
* :doc:`reset\_ids <reset_ids>`
* :doc:`reset\_timestep <reset_timestep>`
* :doc:`reset_ids <reset_ids>`
* :doc:`reset_timestep <reset_timestep>`
* :doc:`restart <restart>`
* :doc:`run <run>`
* :doc:`run\_style <run_style>`
* :doc:`run_style <run_style>`
* :doc:`server <server>`
* :doc:`set <set>`
* :doc:`shell <shell>`
* :doc:`special\_bonds <special_bonds>`
* :doc:`special_bonds <special_bonds>`
* :doc:`suffix <suffix>`
* :doc:`tad <tad>`
* :doc:`temper <temper>`
* :doc:`temper/grem <temper_grem>`
* :doc:`temper/npt <temper_npt>`
* :doc:`thermo <thermo>`
* :doc:`thermo\_modify <thermo_modify>`
* :doc:`thermo\_style <thermo_style>`
* :doc:`third\_order <third_order>`
* :doc:`thermo_modify <thermo_modify>`
* :doc:`thermo_style <thermo_style>`
* :doc:`third_order <third_order>`
* :doc:`timer <timer>`
* :doc:`timestep <timestep>`
* :doc:`uncompute <uncompute>`
@ -129,7 +131,11 @@ An alphabetic list of all general LAMMPS commands.
* :doc:`units <units>`
* :doc:`variable <variable>`
* :doc:`velocity <velocity>`
* :doc:`write\_coeff <write_coeff>`
* :doc:`write\_data <write_data>`
* :doc:`write\_dump <write_dump>`
* :doc:`write\_restart <write_restart>`
* :doc:`write_coeff <write_coeff>`
* :doc:`write_data <write_data>`
* :doc:`write_dump <write_dump>`
* :doc:`write_restart <write_restart>`
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