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fix typos: moleclue -> molecule 

this closes #386
This commit is contained in:
Axel Kohlmeyer 2017-02-27 18:03:18 -05:00
parent 20a9ffe69d
commit 2708c86836
4 changed files with 6 additions and 6 deletions
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4
doc/src/fix_bond_break.txt
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@ -79,8 +79,8 @@ part of bonds, angles, etc.
NOTE: One data structure that is not updated when a bond breaks are
the molecule IDs stored by each atom. Even though one molecule
becomes two moleclues due to the broken bond, all atoms in both new
moleclues retain their original molecule IDs.
becomes two molecules due to the broken bond, all atoms in both new
molecules retain their original molecule IDs.
Computationally, each timestep this fix operates, it loops over all
the bonds in the system and computes distances between pairs of bonded

4
doc/src/fix_bond_create.txt
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@ -118,8 +118,8 @@ of new bonds, angles, etc.
NOTE: One data structure that is not updated when a bond breaks are
the molecule IDs stored by each atom. Even though two molecules
become one moleclue due to the created bond, all atoms in the new
moleclue retain their original molecule IDs.
become one molecule due to the created bond, all atoms in the new
molecule retain their original molecule IDs.
If the {atype} keyword is used and if an angle potential is defined
via the "angle_style"_angle_style.html command, then any new 3-body

2
doc/src/fix_deposit.txt
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@ -15,7 +15,7 @@ fix ID group-ID deposit N type M seed keyword values ... :pre
ID, group-ID are documented in "fix"_fix.html command :ulb,l
deposit = style name of this fix command :l
N = # of atoms or molecules to insert :l
type = atom type to assign to inserted atoms (offset for moleclue insertion) :l
type = atom type to assign to inserted atoms (offset for molecule insertion) :l
M = insert a single atom or molecule every M steps :l
seed = random # seed (positive integer) :l
one or more keyword/value pairs may be appended to args :l

2
doc/src/fix_evaporate.txt
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@ -31,7 +31,7 @@ fix 1 solvent evaporate 1000 10 surface 38277 molecule yes :pre
[Description:]
Remove M atoms from the simulation every N steps. This can be used,
for example, to model evaporation of solvent particles or moleclues
for example, to model evaporation of solvent particles or molecules
(i.e. drying) of a system. Every N steps, the number of atoms in the
fix group and within the specifed region are counted. M of these are
chosen at random and deleted. If there are less than M eligible