From 1e51172f944a0d314cb1c2b53f1363b25d022187 Mon Sep 17 00:00:00 2001 From: sjplimp Date: Fri, 23 Aug 2013 21:01:41 +0000 Subject: [PATCH] git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10686 f3b2605a-c512-4ea7-a41b-209d697bcdaa --- doc/Eqs/fix_wall_lj1043.jpg | Bin 0 -> 10996 bytes doc/Eqs/fix_wall_lj1043.tex | 12 ++++++++++++ doc/fix_wall.html | 28 +++++++++++++++++++++------- doc/fix_wall.txt | 26 +++++++++++++++++++------- 4 files changed, 52 insertions(+), 14 deletions(-) create mode 100644 doc/Eqs/fix_wall_lj1043.jpg create mode 100644 doc/Eqs/fix_wall_lj1043.tex diff --git a/doc/Eqs/fix_wall_lj1043.jpg b/doc/Eqs/fix_wall_lj1043.jpg new file mode 100644 index 0000000000000000000000000000000000000000..303743bf3e84dd0631cc4f1976aea6eaeaf90a26 GIT binary patch literal 10996 zcmeHtXH-WNlr;gMZ-i(b)SKnl9G;{j)9q( zm6er>mV=9fg^P)WmF1=pKuiemyfcA=LkYNP0Wbk@0JyhJ+&1#Bxcw|1?j0P$+tT+G z0319V+&j2;hzRZy;FAJwYu~}e!zZA;2V|!bl;uz-yiZM|ZS3%ML`eLFlW!TPsMx!Y z&XK95n-z@F~hukAv3i3xI5*Gouv+r4mvl+<2QQ`D{V^c65_vgwy@4A{q3IT9MD3j8} z9W^u4|6K<)Yj@v@umB%C6b2QPk3Bguq8+RG=0^`9#N2DIrmSW|b-923Rkc1|C*LEM zs~c1%DjC0$h;7twX1lW-Sj{gw=|*ZuvsX|1iS9|1iWtSJuU6tb^${0765z&=Yc!Gu^nJrINnH{ZEkcj?e(i z>`S;;E87s$z-ojnqaRp%gM&kW2jO8@v$~fV>ofOBWqHlhSG)MxICb<;yo!>Pmf+VC zE&e8#B@ee3)`}-@mYVt)aT&u+kOHC76?x9940W}(7>n-WUpCNuy8iIiWOn2ErPeEP zZ>sfi7Ys$gqraWaySUVXmcvt=pv?H&6!sMX$!YMIWy@KmWO+XBwpD)iFiuM@HNLa-uArxk1#> ziQNh#jcNNAIcLd91{-2o39t92KUXefiTH_W`nFr|Gh<`wnzjWT4iFvOA$sLrzsB9e zpD$QjW94Y5I5RU6=yn^J7sd3E5A2~2V3@^e5;BA=dr49t8|wq;hV<*P?`>t;uSEJX zL!?T-q2cYrT&__#>u2qIJ{J{*R)=_y1i1vJAwo`jgb4RcXKfYcFr7cF)O^v3k%`)wgv-R~?oz8?&IRa_iN9D(zooh|HP7wXtaX zhO$h}lQrLK&QvUe%-(0n&@Y$AAK3Hqt;dXtw7LutdD0Sze@OWOVmwUk_ZY-+(kFM+ z92axF@eXZ{HXp6lTUZ@t+g(lW6LFce_&g`Tp6#%A7;#H^^RK3 z0}F*;c4P<~^P^8#Q{<{L9;CoIaOImgrS@G~8=)B$CEujO3vF?R*6WzjnyuzDgiaPInHx|@{^j&r$;PLxC5XgXRrZ;LvGYC5=EO8BV=8{3 z=FDQTjQgQ$Nzx4<0UN-6yhZ!spKSVM#n!^VY=nn_fj-08uwG_`2uPZ~clG=?Zk;|6 zeBRBG@w^cJ^Pn!Q-72nIsc)GxM_A1sChnGh2izCT-M%v`e|e&Q%VoM|;c4#WFHWEK zqC8zB>y4vq87nW&s`F5Cw4oh~8Lg%c$NbP`Bh>3kcAH3WdS@mIk8;A9M{L83JxM8w z52!Cj`uN3&@CJ{EYb&R*J@T=_x)K6ns9;Xud#+&oV`Hj#b|~Imi(qdeUF01((ty$T zda<;}IlotB82;6&N3=u(oL8c$znPi3n(4Zsz!#suL?|#(5w=XY!l{Hu8fu<17?w2_ z#+<JZ$(Lbb_`Kix_(5O`lo5Ek(w{-L9IaXdxb3*M|s6K9xA- zM|ry;ET%koy1gks`H2e@6lS9bIZ}*f9xuMg+mQb2rR@P>L($H z!otpO_k+FZBb~3W@Hd7!JQ6w~i{3^&nSbk9+$#D8(DSewt7LI%roSiC@=+#T;hLh9 zEY}H|k;93aV*<^IIvHd|kjOfpN- zGI7yJ^T;liZ3c0g+F$}_$Iw5d>U?ZK!c}Hgy5X-LIA`|5_z?W92_$vv^ifvA%Uakvo1T#U(k12zJJMpvE2arn~mfV5!UQwPF+b-x@R?oF>M^M4_lPtY~yNlHI$IO(XVM$99X6LM{96|=2%*5$NA6kFOx{$1Xb_r+?i<<=UsCa}X_1zvayF_2$W-8RX` zfKK}tC2|O?vBaniZ!*8$s4pGiexs32rW=8$k5+*HKToDlT1~0h)VV{V~Xw;6-t< zM+s|nePIP|i^CJq6OVP=M~Ba=&%~Ta5}QL@|9HeNGdMfXtz%EPaCfwsVp5x-Pb1A8 z#r0IbHYHPKLE}!*m-a@XD08`LobQg@mD4AN)o&{FTeT;0sLv+a_c&IFavMB-wbFR_RJjYwk`!OPK>j=wlKH;7Xg!6fTUAWhz5&#!-A-qhNHa=p zK_!2?W{S>0GOWF-Vfk!GMRI#rO5p@QFO8$iUH(ule@4Gac+xkX*GnmE?kIoQPTXt! zg?EW{$6sQ-MK;!b7-8KPVf{w*`I6hnj7g;33Nb|_uO6#hZx|yMHka;Tn(`xO6=5Ie zc>de53d-hB^>eZ((0`N3i^+SBCwR3WJPWd&_if%rL!ZydZ|HesFOyv0!AiSvw`~VZ zmP^ET2%XtJ9Q%MwUWeiGt>9oYXOJ|VGp0J6O|==ZR%JHy&yEC>XG?SU@X0L@#7ire zHA-xW?o8dBo(DY=Nxl!VL2hq*sg)PPeq+1hE*xhX ztnYp^wtH-z@Vrg1{#4=wcUw~o20{;U4oW;OwT~|8nt512aM{fy8)cW>_Pcr6a1^1r zHCsL$r=KBlm3adQ?i5+fca-LKm2Xb}SP&4$==wQ~pY#x1r$69XUZ4AWLz({BL>{?k zsDUqJOX%hL9LZP)R~px(akZ+MIfibCxJkHazA_^TN(}v4Ux_(!tdD`(oIyR>^~^9Ko1?De6(v zXS;eIZvgL2ZT?8Lzb&s9z}JG384{II$br|&FEuL#@FVRe*Lr8B#F&DT`e96Dpr0DB zd{OJNy8|i;gdB^ypwL+o-jHzkJ#eILdx;&@GOhF-^F?=b;GkV>%ejpFS%l)!_G>Re zCdZmhnWi?i%Px@qg58=I#gqw%K4c=7?uxX=wUbAIa?Q1?WBCT4-(Fn(Vy8KrjcJjP zu>eF)wfTCi832`%cEuEG}Pg?ImqR{g3{a>mm5ay+Ko3kbe&ykNl3D38*?O z5ouS#3V!?finHnyS8M)Xa1%m?#8-+XE!Seec|H&UagLAe`MOVEe-pUO9JJl(TIR%1WIu@k` z55DC0T9ea;lYceI?g!eQF73N=%z3t5p}iER;g{`BU$nIUJS<7pD0i5*1Gn3r+^Oj_ zG`RQq_(Cv^r?X0;e479S-Qa1vTb1?%R_>g}&*k(%SA=T$$s*GGM0qSGs(&1fcW^AD zHI0&FIBgQO(J}qO+|8t`QaEwW!o`9O1dmpj&PZJY7x+eXW}TgaC6v-}M+<_TQ+6R; 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fix wall/lj126 command

+

fix wall/lj1043 command +

fix wall/colloid command

fix wall/harmonic command @@ -23,7 +25,7 @@
  • ID, group-ID are documented in fix command -
  • style = wall/lj93 or wall/lj126 or wall/colloid or wall/harmonic +
  • style = wall/lj93 or wall/lj126 or wall/lj1043 or wall/colloid or wall/harmonic
  • one or more face/arg pairs may be appended @@ -78,6 +80,10 @@ wall-particle interactions depends on the style.

    +

    For style wall/lj1043, the energy E is given by the 10/4/3 potential: +

    +
    +

    For style wall/colloid, the energy E is given by an integrated form of the pair_style colloid potential:

    @@ -115,16 +121,18 @@ can specify formulas with various mathematical functions, and include box parameters and timestep and elapsed time. Thus it is easy to specify a time-dependent wall position. See examples below.

    -

    For the wall/lj93 and wall/lj126 styles, epsilon and sigma are -the usual Lennard-Jones parameters, which determine the strength and -size of the particle as it interacts with the wall. Epsilon has -energy units. Note that this epsilon and sigma may be different -than any epsilon or sigma values defined for a pair style that -computes particle-particle interactions. +

    For the wall/lj93 and wall/lj126 and wall/lj1043 styles, +epsilon and sigma are the usual Lennard-Jones parameters, which +determine the strength and size of the particle as it interacts with +the wall. Epsilon has energy units. Note that this epsilon and +sigma may be different than any epsilon or sigma values defined +for a pair style that computes particle-particle interactions.

    The wall/lj93 interaction is derived by integrating over a 3d half-lattice of Lennard-Jones 12/6 particles. The wall/lj126 interaction is effectively a harder, more repulsive wall interaction. +The wall/lj1043 interaction is yet a different form of wall +interaction, described in Magda et al in (Magda).

    For the wall/colloid style, R is the radius of the colloid particle, D is the distance from the surface of the colloid particle @@ -292,4 +300,10 @@ being minimized), you MUST enable the fix_modify

    The option defaults units = lattice, fld = no, and pbc = no.

    +
    + + + +

    (Magda) Magda, Tirrell, Davis, J Chem Phys, 83, 1888-1901 (1985). +

    diff --git a/doc/fix_wall.txt b/doc/fix_wall.txt index 332c65aecc..3fbbf80e48 100644 --- a/doc/fix_wall.txt +++ b/doc/fix_wall.txt @@ -8,6 +8,7 @@ fix wall/lj93 command :h3 fix wall/lj126 command :h3 +fix wall/lj1043 command :h3 fix wall/colloid command :h3 fix wall/harmonic command :h3 @@ -16,7 +17,7 @@ fix wall/harmonic command :h3 fix ID group-ID style face args ... keyword value ... :pre ID, group-ID are documented in "fix"_fix.html command :ulb,l -style = {wall/lj93} or {wall/lj126} or {wall/colloid} or {wall/harmonic} :l +style = {wall/lj93} or {wall/lj126} or {wall/lj1043} or {wall/colloid} or {wall/harmonic} :l one or more face/arg pairs may be appended :l face = {xlo} or {xhi} or {ylo} or {yhi} or {zlo} or {zhi} :l args = coord epsilon sigma cutoff @@ -64,6 +65,10 @@ For style {wall/lj126}, the energy E is given by the 12/6 potential: :c,image(Eqs/pair_lj.jpg) +For style {wall/lj1043}, the energy E is given by the 10/4/3 potential: + +:c,image(Eqs/fix_wall_lj1043.jpg) + For style {wall/colloid}, the energy E is given by an integrated form of the "pair_style colloid"_pair_colloid.html potential: @@ -101,16 +106,18 @@ can specify formulas with various mathematical functions, and include box parameters and timestep and elapsed time. Thus it is easy to specify a time-dependent wall position. See examples below. -For the {wall/lj93} and {wall/lj126} styles, {epsilon} and {sigma} are -the usual Lennard-Jones parameters, which determine the strength and -size of the particle as it interacts with the wall. Epsilon has -energy units. Note that this {epsilon} and {sigma} may be different -than any {epsilon} or {sigma} values defined for a pair style that -computes particle-particle interactions. +For the {wall/lj93} and {wall/lj126} and {wall/lj1043} styles, +{epsilon} and {sigma} are the usual Lennard-Jones parameters, which +determine the strength and size of the particle as it interacts with +the wall. Epsilon has energy units. Note that this {epsilon} and +{sigma} may be different than any {epsilon} or {sigma} values defined +for a pair style that computes particle-particle interactions. The {wall/lj93} interaction is derived by integrating over a 3d half-lattice of Lennard-Jones 12/6 particles. The {wall/lj126} interaction is effectively a harder, more repulsive wall interaction. +The {wall/lj1043} interaction is yet a different form of wall +interaction, described in Magda et al in "(Magda)"_#Magda. For the {wall/colloid} style, {R} is the radius of the colloid particle, {D} is the distance from the surface of the colloid particle @@ -277,3 +284,8 @@ being minimized), you MUST enable the "fix_modify"_fix_modify.html [Default:] The option defaults units = lattice, fld = no, and pbc = no. + +:line + +:link(Magda) +[(Magda)] Magda, Tirrell, Davis, J Chem Phys, 83, 1888-1901 (1985).