git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11891 f3b2605a-c512-4ea7-a41b-209d697bcdaa

doc/fix_deposit.html

@@ -216,6 +216,11 @@ command must have been previously used to define the lattice spacing.
 Note that the units choice affects all the keyword values that have
 units of distance or velocity.
 </P>
+<P>IMPORTANT NOTE: If you are monitoring the temperature of a system
+where the atom count is changing due to adding atoms, you typically
+should use the <A HREF = "compute_modify.html">compute_modify dynamic yes</A>
+command for the temperature compute you are using.
+</P>
 <P><B>Restart, fix_modify, output, run start/stop, minimize info:</B>
 </P>
 <P>This fix writes the state of the deposition to <A HREF = "restart.html">binary restart

doc/fix_deposit.txt

@@ -204,6 +204,11 @@ command must have been previously used to define the lattice spacing.
 Note that the units choice affects all the keyword values that have
 units of distance or velocity.
 
+IMPORTANT NOTE: If you are monitoring the temperature of a system
+where the atom count is changing due to adding atoms, you typically
+should use the "compute_modify dynamic yes"_compute_modify.html
+command for the temperature compute you are using.
+
 [Restart, fix_modify, output, run start/stop, minimize info:]
 
 This fix writes the state of the deposition to "binary restart

doc/fix_evaporate.html

@@ -72,6 +72,11 @@ inside the evaporation region or not.
 removed.  Thus you should not remove atoms too frequently or you will
 incur overhead due to the cost of building neighbor lists.
 </P>
+<P>IMPORTANT NOTE: If you are monitoring the temperature of a system
+where the atom count is changing due to evaporation, you typically
+should use the <A HREF = "compute_modify.html">compute_modify dynamic yes</A>
+command for the temperature compute you are using.
+</P>
 <P><B>Restart, fix_modify, output, run start/stop, minimize info:</B>
 </P>
 <P>No information about this fix is written to <A HREF = "restart.html">binary restart

doc/fix_evaporate.txt

@@ -61,6 +61,11 @@ Note that neighbor lists are re-built on timesteps that atoms are
 removed.  Thus you should not remove atoms too frequently or you will
 incur overhead due to the cost of building neighbor lists.
 
+IMPORTANT NOTE: If you are monitoring the temperature of a system
+where the atom count is changing due to evaporation, you typically
+should use the "compute_modify dynamic yes"_compute_modify.html
+command for the temperature compute you are using.
+
 [Restart, fix_modify, output, run start/stop, minimize info:]
 
 No information about this fix is written to "binary restart

doc/fix_gcmc.html

@@ -158,20 +158,18 @@ keyword, in which case the user-specified chemical potential is
 ignored. For non-ideal gas reservoirs, the user may also specify the 
 fugacity coefficient using the <I>fugacity_coeff</I> keyword.
 </P>
-<P>Use of this fix typically will cause the number of atoms to fluctuate,
-therefore, you will want to use the
-<A HREF = "compute_modify.html">compute_modify</A> command to insure that the
-current number of atoms is used as a normalizing factor each time
-temperature is computed.  Here is the necessary command:
-</P>
-<PRE>compute_modify thermo_temp dynamic yes 
-</PRE>
 <P>If LJ units are used, note that a value of 0.18292026 is used by this
 fix as the reduced value for Planck's constant.  This value was
 derived from LJ paramters for argon, where h* = h/sqrt(sigma^2 *
 epsilon * mass), sigma = 3.429 angstroms, epsilon/k = 121.85 K, and
 mass = 39.948 amu.
 </P>
+<P>IMPORTANT NOTE: If you are monitoring the temperature of a system
+where the particle count is changing due to adding/deleting particles,
+you typically should use the <A HREF = "compute_modify.html">compute_modify dynamic
+yes</A> command for the temperature compute you are
+using.
+</P>
 <P><B>Restart, fix_modify, output, run start/stop, minimize info:</B>
 </P>
 <P>This fix writes the state of the deposition to <A HREF = "restart.html">binary restart

doc/fix_gcmc.txt

@@ -142,20 +142,18 @@ keyword, in which case the user-specified chemical potential is
 ignored. For non-ideal gas reservoirs, the user may also specify the 
 fugacity coefficient using the {fugacity_coeff} keyword.
 
-Use of this fix typically will cause the number of atoms to fluctuate,
-therefore, you will want to use the
-"compute_modify"_compute_modify.html command to insure that the
-current number of atoms is used as a normalizing factor each time
-temperature is computed.  Here is the necessary command:
-
-compute_modify thermo_temp dynamic yes :pre
-
 If LJ units are used, note that a value of 0.18292026 is used by this
 fix as the reduced value for Planck's constant.  This value was
 derived from LJ paramters for argon, where h* = h/sqrt(sigma^2 *
 epsilon * mass), sigma = 3.429 angstroms, epsilon/k = 121.85 K, and
 mass = 39.948 amu.
 
+IMPORTANT NOTE: If you are monitoring the temperature of a system
+where the particle count is changing due to adding/deleting particles,
+you typically should use the "compute_modify dynamic
+yes"_compute_modify.html command for the temperature compute you are
+using.
+
 [Restart, fix_modify, output, run start/stop, minimize info:]
 
 This fix writes the state of the deposition to "binary restart

doc/fix_pour.html

@@ -172,6 +172,12 @@ insertions, it prints a warning.
 or y direction (2d).  This enables pouring particles from a
 successively higher height over time.
 </P>
+<P>IMPORTANT NOTE: If you are monitoring the temperature of a system
+where the particle count is changing due to adding particles, you
+typically should use the <A HREF = "compute_modify.html">compute_modify dynamic
+yes</A> command for the temperature compute you are
+using.
+</P>
 <HR>
 
 <P><B>Restart, fix_modify, output, run start/stop, minimize info:</B>

doc/fix_pour.txt

@@ -161,6 +161,12 @@ The {rate} option moves the insertion volume in the z direction (3d)
 or y direction (2d).  This enables pouring particles from a
 successively higher height over time.
 
+IMPORTANT NOTE: If you are monitoring the temperature of a system
+where the particle count is changing due to adding particles, you
+typically should use the "compute_modify dynamic
+yes"_compute_modify.html command for the temperature compute you are
+using.
+
 :line
 
 [Restart, fix_modify, output, run start/stop, minimize info:]