forked from lijiext/lammps
Merge pull request #196 from akohlmey/charmm-cmap-updates
Some more cmap-related updates for ch2lmp
This commit is contained in:
commit
0f45cd61a5
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@ -8,7 +8,7 @@ lammps2pdb.pl you can convert LAMMPS atom dumps into pdb files.
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In this directory, you should find:
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1) A perl script called "charmm2lammps.pl"
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2) A perl script called "lammps2pdb.pl"
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3) An "example" folder containing an example of how to use these tools.
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3) Two folders containing examples of how to use these tools.
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4) An "other" folder containing other potentially useful tools.
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In addition, you will need to provide the following input for
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@ -24,11 +24,11 @@ To use the charmm2lammps.pl script, type: "perl charmm2lammps.pl
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<forcefield> <project> [-option=value ...]" where <forcefield> is the
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name of the CHARMM FF you are using, (i.e. all22_prot), and <project>
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is the common name of your *.crd and *.psf files. Possible options
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are listed next. If the option requires a parameter, the syntax
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should be -option=value (e.g. -border=5).
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are listed below. If the option requires a parameter, the syntax
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must be like this: -option=value (e.g. -border=5).
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-help display available options
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-charmm add charmm types to LAMMPS data file
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-nohints do not add charmm types and style hints to LAMMPS data file
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-water add TIP3P water [default: 1 g/cc]
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-ions add (counter)ions using Na+ and Cl- [default: 0 mol/l]
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-center recenter atoms
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@ -42,9 +42,8 @@ should be -option=value (e.g. -border=5).
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-ax rotation around x-axis
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-ay rotation around y-axis
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-az rotation around z-axis
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-cd correction for dihedral for carbohydrate systems
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-cmap add CMAP section to data file and fix cmap command lines in
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input script" (NOTE: requires use of *.pdb file)
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input script" (NOTE: requires use of *.pdb file)
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In the "example" folder, you will find example files that were created
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by following the steps below. These steps describe how to take a
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@ -52,15 +51,16 @@ biomolecule and convert it into LAMMPS input, and then create a *.pdb
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trajectory from the LAMMPS output.
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1) Get the pdb file you want to model. http://www.rcsb.org/pdb/ For
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this example, we will use 1ac7.pdb
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this examples, we will use either 1ac7.pdb or 1gb1.pdb
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2) If there are multiple models in the pdb file, choose the one you
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want and delete the others. Save the pared-down file as 1ac7_pared.pdb
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3) Download the charmm FF files and choose the one you want from the
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tarball. We will use all27_na for this example.
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http://www.pharmacy.umaryland.edu/faculty/amackere/force_fields.htm
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toppar_c31b1.tar.gz
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tarball. We will use all27_na for 1AC7 and all36_prot for 1GB1. The
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required files for the example are included in their folders. You can
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download complete CHARMM force field packages from:
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http://mackerell.umaryland.edu/charmm_ff.shtml
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4) Create a *.pgn file for use with psfgen (you will need to have VMD
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installed, http://www.ks.uiuc.edu/Research/vmd/ ). This is the hardest
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@ -85,44 +85,50 @@ writepdb 1ac7.pdb
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writepsf charmm 1ac7.psf
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exit
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5) Type "vmd -e 1ac7.pgn" to build the 1ac7.psf file, and the new
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For 1GB1 the corresponding 1gb1.psf file has been created with CHARMM-GUI,
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http://www.charmm-gui.org
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5) Type "vmd -dispdev none -e 1ac7.pgn" to build the 1ac7.psf file, and the new
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1ac7.pdb file.
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6) Run charmm2lammps.pl by typing:
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"perl charmm2lammps.pl all27_na 1ac7 -charmm -border=1 -pdb_ctrl -water -ions"
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"perl charmm2lammps.pl all27_na 1ac7 -border=2.0 -pdb_ctrl -water -ions"
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or
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"perl charmm2lammps.pl all36_prot 1gb1 -border=2.0 -cmap=36 -water -ions"
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7) Run lammps by typing: "lmp < 1ac7.in"
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7) Run lammps by typing: "lmp_mpi -in 1ac7.in" or "lmp_mpi -in 1gb1.in"
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8) Run lammps2pdb.pl by typing: "perl lammps2pdb.pl 1ac7"
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** Additional notes:
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The charmm2lammps.pl script takes the pdb and psf files for the 1ac7
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molecule and converts them into LAMMPS format. The -water option
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or 1gb1 molecules and converts them into LAMMPS format. The -water option
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embeds the molecule in water on a crystal lattice. The -border option
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includes a layer of water surrounding the minimum dimensions of the
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molecule. The -pdb_ctrl option produces the 1ac7_ctrl.pdb file that
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can be visualized in a standard visualization package such as VMD. The
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-charmm option put comments into the LAMMPS data file (everything
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can be visualized in a standard visualization package such as VMD. By
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default, comments are added into the LAMMPS data file (everything
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after the # sign is a comment) for user convenience in tracking atom
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types etc. according to CHARMM nomenclature.
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types etc. according to CHARMM nomenclature. If this is not desired,
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the -nohints option can be used to turn off this function.
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The example molecule provided above (i.e., 1ac7) is a DNA fragment.
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If instead, a peptide longer than 2 amino acid residues or a protein
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is to be modeled, the '-cmap' option should be used. This will add a
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section at the end of the data file with the heading of 'CMAP' that
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The provided 1ac7 example molecule is a DNA fragment. For peptides
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longer than 2 amino acid residues or a protein is to be modeled,
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e.g. the 1gb1 binding domain of a protein, the '-cmap' option should
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be used. This will add CMAP section at the end of the data file that
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will contain cmap crossterm corrections for the phi-psi dihedrals for
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the amino acid residues. You will then need to also copy the
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appropriate file for the cmap crossterms into your directory and be
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sure that you are using the appropriate cmap crossterms that go with
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the respective version of the charmm force field that is being used
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(e.g, cmap22.data or cmap36.data). This is necessary to account for
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the fact that the CHARMM group has provided updated cmap correction
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(e.g, charmm22.cmap or charmm36.cmap). This is necessary to account
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for the fact that the CHARMM group has provided updated cmap correction
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terms for use with the c36 and more recent version of the charmm
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protein force field. Copies of cmap22.data and cmap36.data are
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provided in the tools/ch2lmp directory.
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protein force field. Copies of charmm22.cmap and charmm36.cmap are
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provided in the potentials directory.
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The default timestep in the LAMMPS *.in file is set to 0.5 fs, which
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The default timestep in the LAMMPS *.in file is set to 1.0 fs, which
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can typically be increased to 2 fs after equilibration if the bonds
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involving H are constrained via shake. Also, after equilibration, the
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delay on neigh_modify can probably increased to 5 or so to improve
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@ -131,7 +137,7 @@ speed.
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The -ions option allows the user to neutralize the simulation cell
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with Na+ or Cl- counterions if the molecule has a net charge
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Additional salt can be added by increasing the default concentration
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(e.g. -ions=0.5).
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(i.e., -ions=0.5).
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** In the "other" file folder, you will find:
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@ -146,3 +152,4 @@ Additional salt can be added by increasing the default concentration
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3) A 3rd party perl script called "crd2pdb.pl"
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4) A 3rd party fortran code called "pdb_to_crd.f"
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File diff suppressed because it is too large
Load Diff
File diff suppressed because it is too large
Load Diff
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@ -0,0 +1,36 @@
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# Created by charmm2lammps v1.9.1 on Wed Oct 5 18:08:55 EDT 2016
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# Command: charmm2lammps.pl -water -ions -border=2.0 all36_prot 1gb1
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units real
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neigh_modify delay 2 every 1
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atom_style full
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bond_style harmonic
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angle_style charmm
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dihedral_style charmm
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improper_style harmonic
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pair_style lj/charmm/coul/long 8 12
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pair_modify mix arithmetic
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kspace_style pppm 1e-6
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read_data 1gb1.data
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special_bonds charmm
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thermo 10
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thermo_style multi
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timestep 1.0
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minimize 0.0 0.0 50 200
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reset_timestep 0
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fix 1 all nve
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fix 2 all shake 1e-6 500 0 m 1.0 a 112
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velocity all create 0.0 12345678 dist uniform
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restart 500 1gb1.restart1 1gb1.restart2
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dump 1 all atom 100 1gb1.dump
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dump_modify 1 image yes scale yes
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thermo 100
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run 1000
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@ -0,0 +1,256 @@
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LAMMPS (5 Oct 2016)
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package omp 0
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WARNING: OpenMP support not enabled during compilation; using 1 thread only. (../fix_omp.cpp:123)
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# Created by charmm2lammps v1.9.1 on Wed Oct 5 18:08:55 EDT 2016
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# Command: charmm2lammps.pl -water -ions -border=2.0 all36_prot 1gb1
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units real
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neigh_modify delay 2 every 1
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atom_style full
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bond_style harmonic
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angle_style charmm
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dihedral_style charmm
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improper_style harmonic
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pair_style lj/charmm/coul/long 8 12
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pair_modify mix arithmetic
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kspace_style pppm 1e-6
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read_data 1gb1.data
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orthogonal box = (-20.8413 -14.5892 -13.805) to (23.4963 14.9692 10.827)
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2 by 2 by 2 MPI processor grid
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reading atoms ...
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2833 atoms
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scanning bonds ...
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4 = max bonds/atom
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scanning angles ...
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6 = max angles/atom
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scanning dihedrals ...
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24 = max dihedrals/atom
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scanning impropers ...
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2 = max impropers/atom
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reading bonds ...
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2177 bonds
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reading angles ...
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2209 angles
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reading dihedrals ...
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2707 dihedrals
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reading impropers ...
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137 impropers
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4 = max # of 1-2 neighbors
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9 = max # of 1-3 neighbors
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17 = max # of 1-4 neighbors
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21 = max # of special neighbors
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special_bonds charmm
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thermo 10
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thermo_style multi
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timestep 1.0
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minimize 0.0 0.0 50 200
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WARNING: Resetting reneighboring criteria during minimization (../min.cpp:168)
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PPPM initialization ...
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WARNING: Using 12-bit tables for long-range coulomb (../kspace.cpp:316)
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G vector (1/distance) = 0.278254
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grid = 45 32 30
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stencil order = 5
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estimated absolute RMS force accuracy = 0.000317429
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estimated relative force accuracy = 9.55928e-07
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using double precision FFTs
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3d grid and FFT values/proc = 15180 5760
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Last active /omp style is kspace_style pppm/omp
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Neighbor list info ...
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1 neighbor list requests
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update every 1 steps, delay 0 steps, check yes
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max neighbors/atom: 2000, page size: 100000
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master list distance cutoff = 14
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ghost atom cutoff = 14
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binsize = 7 -> bins = 7 5 4
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Memory usage per processor = 19.7492 Mbytes
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---------------- Step 0 ----- CPU = 0.0000 (sec) ----------------
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TotEng = -3599.1065 KinEng = 0.0000 Temp = 0.0000
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PotEng = -3599.1065 E_bond = 169.6834 E_angle = 103.6483
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E_dihed = 583.9669 E_impro = 0.0335 E_vdwl = -776.0899
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E_coul = 35419.6941 E_long = -39100.0428 Press = 3623.5803
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---------------- Step 10 ----- CPU = 0.2563 (sec) ----------------
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TotEng = -5168.1778 KinEng = 0.0000 Temp = 0.0000
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PotEng = -5168.1778 E_bond = 120.7538 E_angle = 171.5023
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E_dihed = 583.0143 E_impro = 6.5958 E_vdwl = -1034.8022
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E_coul = 34737.4006 E_long = -39752.6424 Press = -10232.1944
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---------------- Step 20 ----- CPU = 0.4597 (sec) ----------------
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TotEng = -5784.4945 KinEng = 0.0000 Temp = 0.0000
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PotEng = -5784.4945 E_bond = 110.1359 E_angle = 262.6659
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E_dihed = 573.8164 E_impro = 8.5071 E_vdwl = -1050.9646
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E_coul = 34464.2659 E_long = -40152.9212 Press = -10843.0328
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---------------- Step 30 ----- CPU = 0.6813 (sec) ----------------
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TotEng = -6342.0862 KinEng = 0.0000 Temp = 0.0000
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PotEng = -6342.0862 E_bond = 146.0247 E_angle = 272.7224
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E_dihed = 557.6616 E_impro = 7.1074 E_vdwl = -984.4028
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E_coul = 34031.1722 E_long = -40372.3718 Press = -13674.9873
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---------------- Step 40 ----- CPU = 0.8599 (sec) ----------------
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TotEng = -6821.3956 KinEng = 0.0000 Temp = 0.0000
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PotEng = -6821.3956 E_bond = 147.4491 E_angle = 271.5247
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E_dihed = 548.2429 E_impro = 7.1832 E_vdwl = -873.4714
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E_coul = 33514.8072 E_long = -40437.1312 Press = -12024.8390
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---------------- Step 50 ----- CPU = 1.0662 (sec) ----------------
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TotEng = -7278.3435 KinEng = 0.0000 Temp = 0.0000
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PotEng = -7278.3435 E_bond = 181.9934 E_angle = 288.9107
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E_dihed = 541.0050 E_impro = 7.1673 E_vdwl = -501.3825
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E_coul = 32665.6923 E_long = -40461.7297 Press = -10391.9829
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Loop time of 1.06631 on 8 procs for 50 steps with 2833 atoms
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99.3% CPU use with 8 MPI tasks x 1 OpenMP threads
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Minimization stats:
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Stopping criterion = max iterations
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Energy initial, next-to-last, final =
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-3599.10649881 -7238.80368107 -7278.34352699
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Force two-norm initial, final = 1109.81 247.325
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Force max component initial, final = 107.492 37.5055
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Final line search alpha, max atom move = 0.00133024 0.0498915
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Iterations, force evaluations = 50 87
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MPI task timing breakdown:
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Section | min time | avg time | max time |%varavg| %total
|
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---------------------------------------------------------------
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Pair | 0.46313 | 0.53526 | 0.61611 | 6.9 | 50.20
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Bond | 0.0070326 | 0.01008 | 0.013407 | 1.8 | 0.95
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Kspace | 0.3364 | 0.41785 | 0.49165 | 8.0 | 39.19
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Neigh | 0.035014 | 0.035175 | 0.035337 | 0.1 | 3.30
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Comm | 0.058533 | 0.05973 | 0.060792 | 0.3 | 5.60
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Output | 0.00039005 | 0.00040504 | 0.00049496 | 0.2 | 0.04
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Modify | 0.0015707 | 0.0022006 | 0.0025775 | 0.6 | 0.21
|
||||
Other | | 0.005615 | | | 0.53
|
||||
|
||||
Nlocal: 354.125 ave 376 max 344 min
|
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Histogram: 3 1 0 1 2 0 0 0 0 1
|
||||
Nghost: 7405 ave 7531 max 7307 min
|
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Histogram: 1 2 1 0 0 1 1 1 0 1
|
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Neighs: 178281 ave 194848 max 158123 min
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||||
Histogram: 2 0 1 0 0 1 0 1 2 1
|
||||
|
||||
Total # of neighbors = 1426250
|
||||
Ave neighs/atom = 503.442
|
||||
Ave special neighs/atom = 4.67702
|
||||
Neighbor list builds = 4
|
||||
Dangerous builds = 0
|
||||
|
||||
reset_timestep 0
|
||||
fix 1 all nve
|
||||
fix 2 all shake 1e-6 500 0 m 1.0 a 112
|
||||
168 = # of size 2 clusters
|
||||
64 = # of size 3 clusters
|
||||
41 = # of size 4 clusters
|
||||
658 = # of frozen angles
|
||||
velocity all create 0.0 12345678 dist uniform
|
||||
|
||||
restart 500 1gb1.restart1 1gb1.restart2
|
||||
dump 1 all atom 100 1gb1.dump
|
||||
dump_modify 1 image yes scale yes
|
||||
|
||||
thermo 100
|
||||
run 1000
|
||||
PPPM initialization ...
|
||||
WARNING: Using 12-bit tables for long-range coulomb (../kspace.cpp:316)
|
||||
G vector (1/distance) = 0.278254
|
||||
grid = 45 32 30
|
||||
stencil order = 5
|
||||
estimated absolute RMS force accuracy = 0.000317429
|
||||
estimated relative force accuracy = 9.55928e-07
|
||||
using double precision FFTs
|
||||
3d grid and FFT values/proc = 15180 5760
|
||||
Last active /omp style is kspace_style pppm/omp
|
||||
Neighbor list info ...
|
||||
1 neighbor list requests
|
||||
update every 1 steps, delay 2 steps, check yes
|
||||
max neighbors/atom: 2000, page size: 100000
|
||||
master list distance cutoff = 14
|
||||
ghost atom cutoff = 14
|
||||
binsize = 7 -> bins = 7 5 4
|
||||
Memory usage per processor = 20.5221 Mbytes
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||||
---------------- Step 0 ----- CPU = 0.0000 (sec) ----------------
|
||||
TotEng = -7547.0017 KinEng = 0.0000 Temp = 0.0000
|
||||
PotEng = -7547.0017 E_bond = 52.4535 E_angle = 149.7924
|
||||
E_dihed = 541.0050 E_impro = 7.1673 E_vdwl = -501.3825
|
||||
E_coul = 32665.6923 E_long = -40461.7297 Press = -9600.9476
|
||||
---------------- Step 100 ----- CPU = 0.8242 (sec) ----------------
|
||||
TotEng = -7049.9503 KinEng = 688.1123 Temp = 113.4757
|
||||
PotEng = -7738.0625 E_bond = 53.8035 E_angle = 139.7846
|
||||
E_dihed = 529.5460 E_impro = 6.1806 E_vdwl = 52.8666
|
||||
E_coul = 31951.7370 E_long = -40471.9810 Press = -5991.4443
|
||||
---------------- Step 200 ----- CPU = 1.6765 (sec) ----------------
|
||||
TotEng = -7050.0350 KinEng = 956.0848 Temp = 157.6667
|
||||
PotEng = -8006.1198 E_bond = 47.1331 E_angle = 140.9769
|
||||
E_dihed = 517.5474 E_impro = 5.7244 E_vdwl = 635.2166
|
||||
E_coul = 31127.8100 E_long = -40480.5282 Press = -920.9624
|
||||
---------------- Step 300 ----- CPU = 2.5246 (sec) ----------------
|
||||
TotEng = -7050.0984 KinEng = 1049.7346 Temp = 173.1104
|
||||
PotEng = -8099.8330 E_bond = 47.4551 E_angle = 156.5090
|
||||
E_dihed = 520.6006 E_impro = 9.4008 E_vdwl = 451.0904
|
||||
E_coul = 31202.3817 E_long = -40487.2707 Press = -2352.9550
|
||||
---------------- Step 400 ----- CPU = 3.3982 (sec) ----------------
|
||||
TotEng = -7050.1671 KinEng = 1099.2465 Temp = 181.2753
|
||||
PotEng = -8149.4136 E_bond = 56.6375 E_angle = 164.5897
|
||||
E_dihed = 528.8356 E_impro = 8.8390 E_vdwl = 525.0114
|
||||
E_coul = 31060.0380 E_long = -40493.3650 Press = -2146.9087
|
||||
---------------- Step 500 ----- CPU = 4.2800 (sec) ----------------
|
||||
TotEng = -7050.2027 KinEng = 1134.4924 Temp = 187.0877
|
||||
PotEng = -8184.6951 E_bond = 53.5903 E_angle = 169.1090
|
||||
E_dihed = 522.9488 E_impro = 7.9830 E_vdwl = 496.8404
|
||||
E_coul = 31058.9967 E_long = -40494.1633 Press = -2537.1829
|
||||
---------------- Step 600 ----- CPU = 5.1548 (sec) ----------------
|
||||
TotEng = -7050.1894 KinEng = 1122.6756 Temp = 185.1390
|
||||
PotEng = -8172.8649 E_bond = 47.9283 E_angle = 168.7967
|
||||
E_dihed = 518.7200 E_impro = 9.2011 E_vdwl = 499.6778
|
||||
E_coul = 31076.1916 E_long = -40493.3805 Press = -1939.2216
|
||||
---------------- Step 700 ----- CPU = 6.0377 (sec) ----------------
|
||||
TotEng = -7050.2850 KinEng = 1154.4452 Temp = 190.3781
|
||||
PotEng = -8204.7301 E_bond = 54.3594 E_angle = 183.8772
|
||||
E_dihed = 513.0797 E_impro = 9.6842 E_vdwl = 522.0052
|
||||
E_coul = 31008.3632 E_long = -40496.0990 Press = -2059.4885
|
||||
---------------- Step 800 ----- CPU = 6.9161 (sec) ----------------
|
||||
TotEng = -7050.2852 KinEng = 1146.2741 Temp = 189.0306
|
||||
PotEng = -8196.5593 E_bond = 48.8126 E_angle = 171.3411
|
||||
E_dihed = 525.8682 E_impro = 10.5588 E_vdwl = 538.6905
|
||||
E_coul = 31003.8447 E_long = -40495.6752 Press = -1458.5181
|
||||
---------------- Step 900 ----- CPU = 7.8101 (sec) ----------------
|
||||
TotEng = -7050.3025 KinEng = 1154.2134 Temp = 190.3398
|
||||
PotEng = -8204.5159 E_bond = 51.1010 E_angle = 177.9642
|
||||
E_dihed = 520.6908 E_impro = 8.9539 E_vdwl = 521.5994
|
||||
E_coul = 31012.6307 E_long = -40497.4560 Press = -1683.9131
|
||||
---------------- Step 1000 ----- CPU = 8.7313 (sec) ----------------
|
||||
TotEng = -7050.3166 KinEng = 1179.9351 Temp = 194.5816
|
||||
PotEng = -8230.2517 E_bond = 57.8905 E_angle = 190.1556
|
||||
E_dihed = 518.1288 E_impro = 10.0403 E_vdwl = 557.6413
|
||||
E_coul = 30933.6472 E_long = -40497.7554 Press = -1643.1247
|
||||
Loop time of 8.73139 on 8 procs for 1000 steps with 2833 atoms
|
||||
|
||||
Performance: 9.895 ns/day, 2.425 hours/ns, 114.529 timesteps/s
|
||||
99.6% CPU use with 8 MPI tasks x 1 OpenMP threads
|
||||
|
||||
MPI task timing breakdown:
|
||||
Section | min time | avg time | max time |%varavg| %total
|
||||
---------------------------------------------------------------
|
||||
Pair | 3.2841 | 3.856 | 4.393 | 17.3 | 44.16
|
||||
Bond | 0.041216 | 0.074389 | 0.11041 | 7.2 | 0.85
|
||||
Kspace | 2.8668 | 3.4354 | 4.0036 | 18.9 | 39.35
|
||||
Neigh | 0.3024 | 0.30315 | 0.30402 | 0.1 | 3.47
|
||||
Comm | 0.58794 | 0.60511 | 0.61362 | 1.0 | 6.93
|
||||
Output | 0.010607 | 0.010696 | 0.010783 | 0.0 | 0.12
|
||||
Modify | 0.40802 | 0.41482 | 0.42598 | 0.8 | 4.75
|
||||
Other | | 0.03184 | | | 0.36
|
||||
|
||||
Nlocal: 354.125 ave 390 max 323 min
|
||||
Histogram: 2 0 2 0 1 0 0 0 1 2
|
||||
Nghost: 7219.12 ave 7453 max 6941 min
|
||||
Histogram: 1 1 1 1 0 0 0 0 2 2
|
||||
Neighs: 179095 ave 217661 max 144647 min
|
||||
Histogram: 1 0 1 1 1 2 1 0 0 1
|
||||
|
||||
Total # of neighbors = 1432758
|
||||
Ave neighs/atom = 505.739
|
||||
Ave special neighs/atom = 4.67702
|
||||
Neighbor list builds = 39
|
||||
Dangerous builds = 0
|
||||
Total wall time: 0:00:09
|
|
@ -0,0 +1,860 @@
|
|||
REMARK GENERATED BY CHARMM-GUI (HTTP://WWW.CHARMM-GUI.ORG) V1.8 ON OCT, 05. 2016.
|
||||
REMARK READ PDB, MANIPULATE STRUCTURE IF NEEDED, AND GENERATE TOPOLOGY FILE
|
||||
REMARK DATE: 10/ 5/16 11:23:33 CREATED BY USER: apache
|
||||
ATOM 1 N MET P 1 -14.136 1.321 3.616 1.00 0.00 PROA
|
||||
ATOM 2 HT1 MET P 1 -14.508 1.808 4.456 1.00 0.00 PROA
|
||||
ATOM 3 HT2 MET P 1 -14.920 1.092 2.972 1.00 0.00 PROA
|
||||
ATOM 4 HT3 MET P 1 -13.457 1.940 3.129 1.00 0.00 PROA
|
||||
ATOM 5 CA MET P 1 -13.451 0.063 4.032 1.00 0.00 PROA
|
||||
ATOM 6 HA MET P 1 -13.936 -0.296 4.928 1.00 0.00 PROA
|
||||
ATOM 7 CB MET P 1 -13.532 -0.987 2.924 1.00 0.00 PROA
|
||||
ATOM 8 HB1 MET P 1 -13.322 -1.993 3.346 1.00 0.00 PROA
|
||||
ATOM 9 HB2 MET P 1 -12.778 -0.762 2.139 1.00 0.00 PROA
|
||||
ATOM 10 CG MET P 1 -14.934 -0.967 2.313 1.00 0.00 PROA
|
||||
ATOM 11 HG1 MET P 1 -15.640 -0.688 3.121 1.00 0.00 PROA
|
||||
ATOM 12 HG2 MET P 1 -15.164 -2.002 1.987 1.00 0.00 PROA
|
||||
ATOM 13 SD MET P 1 -15.215 0.142 0.911 1.00 0.00 PROA
|
||||
ATOM 14 CE MET P 1 -17.024 0.090 0.941 1.00 0.00 PROA
|
||||
ATOM 15 HE1 MET P 1 -17.422 0.459 1.910 1.00 0.00 PROA
|
||||
ATOM 16 HE2 MET P 1 -17.380 -0.952 0.798 1.00 0.00 PROA
|
||||
ATOM 17 HE3 MET P 1 -17.440 0.730 0.134 1.00 0.00 PROA
|
||||
ATOM 18 C MET P 1 -11.981 0.360 4.336 1.00 0.00 PROA
|
||||
ATOM 19 O MET P 1 -11.557 1.499 4.315 1.00 0.00 PROA
|
||||
ATOM 20 N THR P 2 -11.236 -0.674 4.615 1.00 0.00 PROA
|
||||
ATOM 21 HN THR P 2 -11.585 -1.608 4.637 1.00 0.00 PROA
|
||||
ATOM 22 CA THR P 2 -9.789 -0.480 4.920 1.00 0.00 PROA
|
||||
ATOM 23 HA THR P 2 -9.471 0.458 4.489 1.00 0.00 PROA
|
||||
ATOM 24 CB THR P 2 -9.596 -0.471 6.438 1.00 0.00 PROA
|
||||
ATOM 25 HB THR P 2 -9.784 -1.477 6.870 1.00 0.00 PROA
|
||||
ATOM 26 OG1 THR P 2 -10.561 0.460 6.921 1.00 0.00 PROA
|
||||
ATOM 27 HG1 THR P 2 -10.262 0.722 7.795 1.00 0.00 PROA
|
||||
ATOM 28 CG2 THR P 2 -8.242 0.113 6.829 1.00 0.00 PROA
|
||||
ATOM 29 HG21 THR P 2 -8.282 1.223 6.800 1.00 0.00 PROA
|
||||
ATOM 30 HG22 THR P 2 -7.461 -0.233 6.118 1.00 0.00 PROA
|
||||
ATOM 31 HG23 THR P 2 -7.976 -0.205 7.860 1.00 0.00 PROA
|
||||
ATOM 32 C THR P 2 -8.972 -1.621 4.305 1.00 0.00 PROA
|
||||
ATOM 33 O THR P 2 -9.232 -2.779 4.565 1.00 0.00 PROA
|
||||
ATOM 34 N TYR P 3 -7.999 -1.268 3.504 1.00 0.00 PROA
|
||||
ATOM 35 HN TYR P 3 -7.779 -0.318 3.295 1.00 0.00 PROA
|
||||
ATOM 36 CA TYR P 3 -7.158 -2.327 2.856 1.00 0.00 PROA
|
||||
ATOM 37 HA TYR P 3 -7.689 -3.266 2.911 1.00 0.00 PROA
|
||||
ATOM 38 CB TYR P 3 -6.895 -1.941 1.399 1.00 0.00 PROA
|
||||
ATOM 39 HB1 TYR P 3 -6.626 -2.840 0.804 1.00 0.00 PROA
|
||||
ATOM 40 HB2 TYR P 3 -6.081 -1.187 1.341 1.00 0.00 PROA
|
||||
ATOM 41 CG TYR P 3 -8.164 -1.328 0.800 1.00 0.00 PROA
|
||||
ATOM 42 CD1 TYR P 3 -8.527 -0.030 1.101 1.00 0.00 PROA
|
||||
ATOM 43 HD1 TYR P 3 -7.911 0.559 1.764 1.00 0.00 PROA
|
||||
ATOM 44 CE1 TYR P 3 -9.672 0.520 0.560 1.00 0.00 PROA
|
||||
ATOM 45 HE1 TYR P 3 -9.945 1.536 0.803 1.00 0.00 PROA
|
||||
ATOM 46 CZ TYR P 3 -10.470 -0.218 -0.288 1.00 0.00 PROA
|
||||
ATOM 47 OH TYR P 3 -11.615 0.333 -0.828 1.00 0.00 PROA
|
||||
ATOM 48 HH TYR P 3 -11.943 -0.266 -1.503 1.00 0.00 PROA
|
||||
ATOM 49 CD2 TYR P 3 -8.963 -2.065 -0.048 1.00 0.00 PROA
|
||||
ATOM 50 HD2 TYR P 3 -8.691 -3.081 -0.292 1.00 0.00 PROA
|
||||
ATOM 51 CE2 TYR P 3 -10.108 -1.514 -0.588 1.00 0.00 PROA
|
||||
ATOM 52 HE2 TYR P 3 -10.725 -2.103 -1.251 1.00 0.00 PROA
|
||||
ATOM 53 C TYR P 3 -5.826 -2.467 3.602 1.00 0.00 PROA
|
||||
ATOM 54 O TYR P 3 -5.392 -1.551 4.271 1.00 0.00 PROA
|
||||
ATOM 55 N LYS P 4 -5.205 -3.613 3.467 1.00 0.00 PROA
|
||||
ATOM 56 HN LYS P 4 -5.555 -4.362 2.910 1.00 0.00 PROA
|
||||
ATOM 57 CA LYS P 4 -3.902 -3.836 4.174 1.00 0.00 PROA
|
||||
ATOM 58 HA LYS P 4 -3.795 -3.084 4.942 1.00 0.00 PROA
|
||||
ATOM 59 CB LYS P 4 -3.908 -5.240 4.786 1.00 0.00 PROA
|
||||
ATOM 60 HB1 LYS P 4 -3.485 -5.965 4.058 1.00 0.00 PROA
|
||||
ATOM 61 HB2 LYS P 4 -4.952 -5.537 5.023 1.00 0.00 PROA
|
||||
ATOM 62 CG LYS P 4 -3.065 -5.252 6.072 1.00 0.00 PROA
|
||||
ATOM 63 HG1 LYS P 4 -3.715 -5.030 6.945 1.00 0.00 PROA
|
||||
ATOM 64 HG2 LYS P 4 -2.274 -4.475 6.006 1.00 0.00 PROA
|
||||
ATOM 65 CD LYS P 4 -2.417 -6.631 6.251 1.00 0.00 PROA
|
||||
ATOM 66 HD1 LYS P 4 -1.776 -6.627 7.159 1.00 0.00 PROA
|
||||
ATOM 67 HD2 LYS P 4 -1.785 -6.864 5.367 1.00 0.00 PROA
|
||||
ATOM 68 CE LYS P 4 -3.508 -7.695 6.397 1.00 0.00 PROA
|
||||
ATOM 69 HE1 LYS P 4 -4.495 -7.209 6.553 1.00 0.00 PROA
|
||||
ATOM 70 HE2 LYS P 4 -3.273 -8.366 7.251 1.00 0.00 PROA
|
||||
ATOM 71 NZ LYS P 4 -3.593 -8.527 5.165 1.00 0.00 PROA
|
||||
ATOM 72 HZ1 LYS P 4 -2.643 -8.862 4.906 1.00 0.00 PROA
|
||||
ATOM 73 HZ2 LYS P 4 -3.983 -7.957 4.388 1.00 0.00 PROA
|
||||
ATOM 74 HZ3 LYS P 4 -4.213 -9.344 5.340 1.00 0.00 PROA
|
||||
ATOM 75 C LYS P 4 -2.738 -3.736 3.185 1.00 0.00 PROA
|
||||
ATOM 76 O LYS P 4 -2.705 -4.433 2.202 1.00 0.00 PROA
|
||||
ATOM 77 N LEU P 5 -1.799 -2.885 3.475 1.00 0.00 PROA
|
||||
ATOM 78 HN LEU P 5 -1.804 -2.315 4.293 1.00 0.00 PROA
|
||||
ATOM 79 CA LEU P 5 -0.643 -2.743 2.540 1.00 0.00 PROA
|
||||
ATOM 80 HA LEU P 5 -0.978 -2.980 1.541 1.00 0.00 PROA
|
||||
ATOM 81 CB LEU P 5 -0.118 -1.282 2.613 1.00 0.00 PROA
|
||||
ATOM 82 HB1 LEU P 5 -0.206 -0.921 3.660 1.00 0.00 PROA
|
||||
ATOM 83 HB2 LEU P 5 -0.747 -0.642 1.958 1.00 0.00 PROA
|
||||
ATOM 84 CG LEU P 5 1.371 -1.158 2.160 1.00 0.00 PROA
|
||||
ATOM 85 HG LEU P 5 2.007 -1.789 2.817 1.00 0.00 PROA
|
||||
ATOM 86 CD1 LEU P 5 1.545 -1.612 0.700 1.00 0.00 PROA
|
||||
ATOM 87 HD11 LEU P 5 1.588 -0.728 0.028 1.00 0.00 PROA
|
||||
ATOM 88 HD12 LEU P 5 0.685 -2.247 0.396 1.00 0.00 PROA
|
||||
ATOM 89 HD13 LEU P 5 2.490 -2.186 0.593 1.00 0.00 PROA
|
||||
ATOM 90 CD2 LEU P 5 1.783 0.314 2.258 1.00 0.00 PROA
|
||||
ATOM 91 HD21 LEU P 5 1.678 0.671 3.305 1.00 0.00 PROA
|
||||
ATOM 92 HD22 LEU P 5 1.131 0.933 1.605 1.00 0.00 PROA
|
||||
ATOM 93 HD23 LEU P 5 2.843 0.431 1.948 1.00 0.00 PROA
|
||||
ATOM 94 C LEU P 5 0.470 -3.722 2.927 1.00 0.00 PROA
|
||||
ATOM 95 O LEU P 5 0.621 -4.067 4.083 1.00 0.00 PROA
|
||||
ATOM 96 N ILE P 6 1.219 -4.142 1.941 1.00 0.00 PROA
|
||||
ATOM 97 HN ILE P 6 1.069 -3.868 0.994 1.00 0.00 PROA
|
||||
ATOM 98 CA ILE P 6 2.351 -5.066 2.198 1.00 0.00 PROA
|
||||
ATOM 99 HA ILE P 6 2.487 -5.148 3.266 1.00 0.00 PROA
|
||||
ATOM 100 CB ILE P 6 2.044 -6.433 1.589 1.00 0.00 PROA
|
||||
ATOM 101 HB ILE P 6 1.757 -6.312 0.523 1.00 0.00 PROA
|
||||
ATOM 102 CG2 ILE P 6 3.288 -7.319 1.691 1.00 0.00 PROA
|
||||
ATOM 103 HG21 ILE P 6 3.685 -7.302 2.729 1.00 0.00 PROA
|
||||
ATOM 104 HG22 ILE P 6 4.076 -6.944 1.004 1.00 0.00 PROA
|
||||
ATOM 105 HG23 ILE P 6 3.029 -8.367 1.427 1.00 0.00 PROA
|
||||
ATOM 106 CG1 ILE P 6 0.893 -7.076 2.368 1.00 0.00 PROA
|
||||
ATOM 107 HG11 ILE P 6 0.164 -6.294 2.672 1.00 0.00 PROA
|
||||
ATOM 108 HG12 ILE P 6 1.289 -7.571 3.280 1.00 0.00 PROA
|
||||
ATOM 109 CD ILE P 6 0.199 -8.110 1.481 1.00 0.00 PROA
|
||||
ATOM 110 HD1 ILE P 6 0.953 -8.676 0.892 1.00 0.00 PROA
|
||||
ATOM 111 HD2 ILE P 6 -0.492 -7.600 0.776 1.00 0.00 PROA
|
||||
ATOM 112 HD3 ILE P 6 -0.370 -8.827 2.110 1.00 0.00 PROA
|
||||
ATOM 113 C ILE P 6 3.620 -4.487 1.568 1.00 0.00 PROA
|
||||
ATOM 114 O ILE P 6 3.820 -4.572 0.372 1.00 0.00 PROA
|
||||
ATOM 115 N LEU P 7 4.450 -3.906 2.389 1.00 0.00 PROA
|
||||
ATOM 116 HN LEU P 7 4.294 -3.848 3.372 1.00 0.00 PROA
|
||||
ATOM 117 CA LEU P 7 5.702 -3.290 1.859 1.00 0.00 PROA
|
||||
ATOM 118 HA LEU P 7 5.477 -2.811 0.917 1.00 0.00 PROA
|
||||
ATOM 119 CB LEU P 7 6.218 -2.272 2.874 1.00 0.00 PROA
|
||||
ATOM 120 HB1 LEU P 7 7.241 -1.945 2.590 1.00 0.00 PROA
|
||||
ATOM 121 HB2 LEU P 7 6.257 -2.735 3.883 1.00 0.00 PROA
|
||||
ATOM 122 CG LEU P 7 5.277 -1.067 2.894 1.00 0.00 PROA
|
||||
ATOM 123 HG LEU P 7 4.323 -1.329 2.388 1.00 0.00 PROA
|
||||
ATOM 124 CD1 LEU P 7 4.999 -0.668 4.344 1.00 0.00 PROA
|
||||
ATOM 125 HD11 LEU P 7 5.948 -0.400 4.855 1.00 0.00 PROA
|
||||
ATOM 126 HD12 LEU P 7 4.531 -1.517 4.887 1.00 0.00 PROA
|
||||
ATOM 127 HD13 LEU P 7 4.321 0.212 4.371 1.00 0.00 PROA
|
||||
ATOM 128 CD2 LEU P 7 5.942 0.104 2.170 1.00 0.00 PROA
|
||||
ATOM 129 HD21 LEU P 7 6.161 -0.173 1.117 1.00 0.00 PROA
|
||||
ATOM 130 HD22 LEU P 7 6.897 0.367 2.673 1.00 0.00 PROA
|
||||
ATOM 131 HD23 LEU P 7 5.264 0.984 2.172 1.00 0.00 PROA
|
||||
ATOM 132 C LEU P 7 6.776 -4.348 1.607 1.00 0.00 PROA
|
||||
ATOM 133 O LEU P 7 7.260 -4.974 2.528 1.00 0.00 PROA
|
||||
ATOM 134 N ASN P 8 7.121 -4.526 0.354 1.00 0.00 PROA
|
||||
ATOM 135 HN ASN P 8 6.708 -4.023 -0.401 1.00 0.00 PROA
|
||||
ATOM 136 CA ASN P 8 8.174 -5.517 0.012 1.00 0.00 PROA
|
||||
ATOM 137 HA ASN P 8 8.344 -6.151 0.870 1.00 0.00 PROA
|
||||
ATOM 138 CB ASN P 8 7.688 -6.338 -1.187 1.00 0.00 PROA
|
||||
ATOM 139 HB1 ASN P 8 8.494 -6.405 -1.948 1.00 0.00 PROA
|
||||
ATOM 140 HB2 ASN P 8 6.799 -5.851 -1.640 1.00 0.00 PROA
|
||||
ATOM 141 CG ASN P 8 7.314 -7.738 -0.726 1.00 0.00 PROA
|
||||
ATOM 142 OD1 ASN P 8 8.059 -8.400 -0.030 1.00 0.00 PROA
|
||||
ATOM 143 ND2 ASN P 8 6.167 -8.225 -1.096 1.00 0.00 PROA
|
||||
ATOM 144 HD21 ASN P 8 5.897 -9.143 -0.807 1.00 0.00 PROA
|
||||
ATOM 145 HD22 ASN P 8 5.555 -7.681 -1.670 1.00 0.00 PROA
|
||||
ATOM 146 C ASN P 8 9.476 -4.775 -0.333 1.00 0.00 PROA
|
||||
ATOM 147 O ASN P 8 10.211 -5.157 -1.223 1.00 0.00 PROA
|
||||
ATOM 148 N GLY P 9 9.740 -3.732 0.400 1.00 0.00 PROA
|
||||
ATOM 149 HN GLY P 9 9.158 -3.426 1.149 1.00 0.00 PROA
|
||||
ATOM 150 CA GLY P 9 10.969 -2.943 0.122 1.00 0.00 PROA
|
||||
ATOM 151 HA1 GLY P 9 11.031 -2.141 0.843 1.00 0.00 PROA
|
||||
ATOM 152 HA2 GLY P 9 10.898 -2.540 -0.878 1.00 0.00 PROA
|
||||
ATOM 153 C GLY P 9 12.207 -3.827 0.231 1.00 0.00 PROA
|
||||
ATOM 154 O GLY P 9 12.302 -4.667 1.104 1.00 0.00 PROA
|
||||
ATOM 155 N LYS P 10 13.133 -3.614 -0.658 1.00 0.00 PROA
|
||||
ATOM 156 HN LYS P 10 13.058 -2.921 -1.371 1.00 0.00 PROA
|
||||
ATOM 157 CA LYS P 10 14.377 -4.434 -0.630 1.00 0.00 PROA
|
||||
ATOM 158 HA LYS P 10 14.098 -5.475 -0.563 1.00 0.00 PROA
|
||||
ATOM 159 CB LYS P 10 15.182 -4.173 -1.902 1.00 0.00 PROA
|
||||
ATOM 160 HB1 LYS P 10 15.442 -3.095 -1.967 1.00 0.00 PROA
|
||||
ATOM 161 HB2 LYS P 10 14.578 -4.450 -2.792 1.00 0.00 PROA
|
||||
ATOM 162 CG LYS P 10 16.461 -5.011 -1.865 1.00 0.00 PROA
|
||||
ATOM 163 HG1 LYS P 10 16.245 -6.005 -1.418 1.00 0.00 PROA
|
||||
ATOM 164 HG2 LYS P 10 17.227 -4.498 -1.245 1.00 0.00 PROA
|
||||
ATOM 165 CD LYS P 10 16.986 -5.190 -3.291 1.00 0.00 PROA
|
||||
ATOM 166 HD1 LYS P 10 16.635 -4.350 -3.928 1.00 0.00 PROA
|
||||
ATOM 167 HD2 LYS P 10 16.605 -6.144 -3.714 1.00 0.00 PROA
|
||||
ATOM 168 CE LYS P 10 18.516 -5.212 -3.263 1.00 0.00 PROA
|
||||
ATOM 169 HE1 LYS P 10 18.906 -5.708 -4.177 1.00 0.00 PROA
|
||||
ATOM 170 HE2 LYS P 10 18.872 -5.746 -2.357 1.00 0.00 PROA
|
||||
ATOM 171 NZ LYS P 10 19.056 -3.825 -3.224 1.00 0.00 PROA
|
||||
ATOM 172 HZ1 LYS P 10 18.709 -3.341 -2.371 1.00 0.00 PROA
|
||||
ATOM 173 HZ2 LYS P 10 18.741 -3.306 -4.069 1.00 0.00 PROA
|
||||
ATOM 174 HZ3 LYS P 10 20.095 -3.858 -3.206 1.00 0.00 PROA
|
||||
ATOM 175 C LYS P 10 15.211 -4.054 0.590 1.00 0.00 PROA
|
||||
ATOM 176 O LYS P 10 15.959 -4.858 1.112 1.00 0.00 PROA
|
||||
ATOM 177 N THR P 11 15.059 -2.830 1.017 1.00 0.00 PROA
|
||||
ATOM 178 HN THR P 11 14.445 -2.175 0.583 1.00 0.00 PROA
|
||||
ATOM 179 CA THR P 11 15.822 -2.358 2.202 1.00 0.00 PROA
|
||||
ATOM 180 HA THR P 11 16.616 -3.063 2.401 1.00 0.00 PROA
|
||||
ATOM 181 CB THR P 11 16.392 -0.970 1.905 1.00 0.00 PROA
|
||||
ATOM 182 HB THR P 11 16.464 -0.361 2.831 1.00 0.00 PROA
|
||||
ATOM 183 OG1 THR P 11 15.462 -0.382 1.001 1.00 0.00 PROA
|
||||
ATOM 184 HG1 THR P 11 15.713 0.541 0.926 1.00 0.00 PROA
|
||||
ATOM 185 CG2 THR P 11 17.707 -1.056 1.134 1.00 0.00 PROA
|
||||
ATOM 186 HG21 THR P 11 17.549 -1.578 0.166 1.00 0.00 PROA
|
||||
ATOM 187 HG22 THR P 11 18.456 -1.625 1.725 1.00 0.00 PROA
|
||||
ATOM 188 HG23 THR P 11 18.092 -0.034 0.927 1.00 0.00 PROA
|
||||
ATOM 189 C THR P 11 14.901 -2.278 3.423 1.00 0.00 PROA
|
||||
ATOM 190 O THR P 11 15.353 -2.035 4.524 1.00 0.00 PROA
|
||||
ATOM 191 N LEU P 12 13.626 -2.483 3.207 1.00 0.00 PROA
|
||||
ATOM 192 HN LEU P 12 13.244 -2.687 2.309 1.00 0.00 PROA
|
||||
ATOM 193 CA LEU P 12 12.680 -2.409 4.364 1.00 0.00 PROA
|
||||
ATOM 194 HA LEU P 12 13.117 -2.937 5.199 1.00 0.00 PROA
|
||||
ATOM 195 CB LEU P 12 12.445 -0.938 4.715 1.00 0.00 PROA
|
||||
ATOM 196 HB1 LEU P 12 11.828 -0.460 3.924 1.00 0.00 PROA
|
||||
ATOM 197 HB2 LEU P 12 13.420 -0.410 4.777 1.00 0.00 PROA
|
||||
ATOM 198 CG LEU P 12 11.718 -0.839 6.066 1.00 0.00 PROA
|
||||
ATOM 199 HG LEU P 12 10.802 -1.467 6.040 1.00 0.00 PROA
|
||||
ATOM 200 CD1 LEU P 12 12.639 -1.322 7.198 1.00 0.00 PROA
|
||||
ATOM 201 HD11 LEU P 12 13.628 -0.821 7.126 1.00 0.00 PROA
|
||||
ATOM 202 HD12 LEU P 12 12.791 -2.420 7.119 1.00 0.00 PROA
|
||||
ATOM 203 HD13 LEU P 12 12.188 -1.077 8.183 1.00 0.00 PROA
|
||||
ATOM 204 CD2 LEU P 12 11.335 0.619 6.322 1.00 0.00 PROA
|
||||
ATOM 205 HD21 LEU P 12 10.664 0.985 5.515 1.00 0.00 PROA
|
||||
ATOM 206 HD22 LEU P 12 12.248 1.252 6.339 1.00 0.00 PROA
|
||||
ATOM 207 HD23 LEU P 12 10.802 0.705 7.293 1.00 0.00 PROA
|
||||
ATOM 208 C LEU P 12 11.338 -3.072 4.024 1.00 0.00 PROA
|
||||
ATOM 209 O LEU P 12 10.709 -2.737 3.041 1.00 0.00 PROA
|
||||
ATOM 210 N LYS P 13 10.929 -3.996 4.859 1.00 0.00 PROA
|
||||
ATOM 211 HN LYS P 13 11.448 -4.268 5.666 1.00 0.00 PROA
|
||||
ATOM 212 CA LYS P 13 9.626 -4.695 4.619 1.00 0.00 PROA
|
||||
ATOM 213 HA LYS P 13 9.208 -4.328 3.693 1.00 0.00 PROA
|
||||
ATOM 214 CB LYS P 13 9.869 -6.202 4.541 1.00 0.00 PROA
|
||||
ATOM 215 HB1 LYS P 13 8.913 -6.724 4.322 1.00 0.00 PROA
|
||||
ATOM 216 HB2 LYS P 13 10.263 -6.568 5.513 1.00 0.00 PROA
|
||||
ATOM 217 CG LYS P 13 10.882 -6.493 3.431 1.00 0.00 PROA
|
||||
ATOM 218 HG1 LYS P 13 11.321 -5.540 3.064 1.00 0.00 PROA
|
||||
ATOM 219 HG2 LYS P 13 10.375 -7.003 2.585 1.00 0.00 PROA
|
||||
ATOM 220 CD LYS P 13 11.989 -7.391 3.987 1.00 0.00 PROA
|
||||
ATOM 221 HD1 LYS P 13 11.550 -8.343 4.356 1.00 0.00 PROA
|
||||
ATOM 222 HD2 LYS P 13 12.498 -6.880 4.832 1.00 0.00 PROA
|
||||
ATOM 223 CE LYS P 13 13.001 -7.685 2.877 1.00 0.00 PROA
|
||||
ATOM 224 HE1 LYS P 13 12.470 -7.896 1.924 1.00 0.00 PROA
|
||||
ATOM 225 HE2 LYS P 13 13.636 -8.552 3.160 1.00 0.00 PROA
|
||||
ATOM 226 NZ LYS P 13 13.892 -6.511 2.660 1.00 0.00 PROA
|
||||
ATOM 227 HZ1 LYS P 13 14.276 -6.193 3.573 1.00 0.00 PROA
|
||||
ATOM 228 HZ2 LYS P 13 13.348 -5.739 2.225 1.00 0.00 PROA
|
||||
ATOM 229 HZ3 LYS P 13 14.674 -6.781 2.030 1.00 0.00 PROA
|
||||
ATOM 230 C LYS P 13 8.653 -4.391 5.765 1.00 0.00 PROA
|
||||
ATOM 231 O LYS P 13 9.030 -4.407 6.921 1.00 0.00 PROA
|
||||
ATOM 232 N GLY P 14 7.422 -4.123 5.423 1.00 0.00 PROA
|
||||
ATOM 233 HN GLY P 14 7.105 -4.114 4.478 1.00 0.00 PROA
|
||||
ATOM 234 CA GLY P 14 6.422 -3.811 6.484 1.00 0.00 PROA
|
||||
ATOM 235 HA1 GLY P 14 6.543 -2.777 6.773 1.00 0.00 PROA
|
||||
ATOM 236 HA2 GLY P 14 6.608 -4.458 7.328 1.00 0.00 PROA
|
||||
ATOM 237 C GLY P 14 4.996 -4.035 5.973 1.00 0.00 PROA
|
||||
ATOM 238 O GLY P 14 4.784 -4.706 4.983 1.00 0.00 PROA
|
||||
ATOM 239 N GLU P 15 4.048 -3.464 6.666 1.00 0.00 PROA
|
||||
ATOM 240 HN GLU P 15 4.225 -2.910 7.476 1.00 0.00 PROA
|
||||
ATOM 241 CA GLU P 15 2.628 -3.627 6.257 1.00 0.00 PROA
|
||||
ATOM 242 HA GLU P 15 2.525 -3.280 5.239 1.00 0.00 PROA
|
||||
ATOM 243 CB GLU P 15 2.236 -5.102 6.367 1.00 0.00 PROA
|
||||
ATOM 244 HB1 GLU P 15 2.641 -5.663 5.497 1.00 0.00 PROA
|
||||
ATOM 245 HB2 GLU P 15 1.129 -5.196 6.371 1.00 0.00 PROA
|
||||
ATOM 246 CG GLU P 15 2.806 -5.680 7.663 1.00 0.00 PROA
|
||||
ATOM 247 HG1 GLU P 15 3.031 -4.858 8.375 1.00 0.00 PROA
|
||||
ATOM 248 HG2 GLU P 15 3.740 -6.241 7.447 1.00 0.00 PROA
|
||||
ATOM 249 CD GLU P 15 1.779 -6.626 8.288 1.00 0.00 PROA
|
||||
ATOM 250 OE1 GLU P 15 1.486 -7.614 7.636 1.00 0.00 PROA
|
||||
ATOM 251 OE2 GLU P 15 1.345 -6.306 9.382 1.00 0.00 PROA
|
||||
ATOM 252 C GLU P 15 1.734 -2.783 7.176 1.00 0.00 PROA
|
||||
ATOM 253 O GLU P 15 1.858 -2.839 8.383 1.00 0.00 PROA
|
||||
ATOM 254 N THR P 16 0.856 -2.020 6.592 1.00 0.00 PROA
|
||||
ATOM 255 HN THR P 16 0.744 -1.968 5.603 1.00 0.00 PROA
|
||||
ATOM 256 CA THR P 16 -0.041 -1.168 7.434 1.00 0.00 PROA
|
||||
ATOM 257 HA THR P 16 -0.175 -1.653 8.389 1.00 0.00 PROA
|
||||
ATOM 258 CB THR P 16 0.599 0.212 7.613 1.00 0.00 PROA
|
||||
ATOM 259 HB THR P 16 1.644 0.123 7.979 1.00 0.00 PROA
|
||||
ATOM 260 OG1 THR P 16 -0.210 0.863 8.588 1.00 0.00 PROA
|
||||
ATOM 261 HG1 THR P 16 0.176 1.733 8.714 1.00 0.00 PROA
|
||||
ATOM 262 CG2 THR P 16 0.471 1.058 6.350 1.00 0.00 PROA
|
||||
ATOM 263 HG21 THR P 16 -0.588 1.357 6.196 1.00 0.00 PROA
|
||||
ATOM 264 HG22 THR P 16 0.806 0.473 5.467 1.00 0.00 PROA
|
||||
ATOM 265 HG23 THR P 16 1.088 1.977 6.446 1.00 0.00 PROA
|
||||
ATOM 266 C THR P 16 -1.410 -1.021 6.767 1.00 0.00 PROA
|
||||
ATOM 267 O THR P 16 -1.527 -1.123 5.565 1.00 0.00 PROA
|
||||
ATOM 268 N THR P 17 -2.416 -0.778 7.567 1.00 0.00 PROA
|
||||
ATOM 269 HN THR P 17 -2.318 -0.680 8.554 1.00 0.00 PROA
|
||||
ATOM 270 CA THR P 17 -3.792 -0.636 6.999 1.00 0.00 PROA
|
||||
ATOM 271 HA THR P 17 -3.785 -1.015 5.988 1.00 0.00 PROA
|
||||
ATOM 272 CB THR P 17 -4.777 -1.426 7.866 1.00 0.00 PROA
|
||||
ATOM 273 HB THR P 17 -5.713 -1.644 7.310 1.00 0.00 PROA
|
||||
ATOM 274 OG1 THR P 17 -5.050 -0.572 8.973 1.00 0.00 PROA
|
||||
ATOM 275 HG1 THR P 17 -4.665 0.279 8.752 1.00 0.00 PROA
|
||||
ATOM 276 CG2 THR P 17 -4.128 -2.668 8.474 1.00 0.00 PROA
|
||||
ATOM 277 HG21 THR P 17 -3.389 -2.372 9.249 1.00 0.00 PROA
|
||||
ATOM 278 HG22 THR P 17 -3.602 -3.245 7.684 1.00 0.00 PROA
|
||||
ATOM 279 HG23 THR P 17 -4.904 -3.306 8.949 1.00 0.00 PROA
|
||||
ATOM 280 C THR P 17 -4.211 0.834 6.971 1.00 0.00 PROA
|
||||
ATOM 281 O THR P 17 -3.964 1.570 7.907 1.00 0.00 PROA
|
||||
ATOM 282 N THR P 18 -4.838 1.226 5.890 1.00 0.00 PROA
|
||||
ATOM 283 HN THR P 18 -5.032 0.618 5.124 1.00 0.00 PROA
|
||||
ATOM 284 CA THR P 18 -5.298 2.643 5.765 1.00 0.00 PROA
|
||||
ATOM 285 HA THR P 18 -5.145 3.137 6.713 1.00 0.00 PROA
|
||||
ATOM 286 CB THR P 18 -4.495 3.335 4.659 1.00 0.00 PROA
|
||||
ATOM 287 HB THR P 18 -3.425 3.041 4.699 1.00 0.00 PROA
|
||||
ATOM 288 OG1 THR P 18 -4.633 4.727 4.928 1.00 0.00 PROA
|
||||
ATOM 289 HG1 THR P 18 -4.135 5.179 4.243 1.00 0.00 PROA
|
||||
ATOM 290 CG2 THR P 18 -5.134 3.128 3.288 1.00 0.00 PROA
|
||||
ATOM 291 HG21 THR P 18 -6.085 3.699 3.220 1.00 0.00 PROA
|
||||
ATOM 292 HG22 THR P 18 -5.355 2.050 3.133 1.00 0.00 PROA
|
||||
ATOM 293 HG23 THR P 18 -4.447 3.487 2.492 1.00 0.00 PROA
|
||||
ATOM 294 C THR P 18 -6.789 2.682 5.411 1.00 0.00 PROA
|
||||
ATOM 295 O THR P 18 -7.286 1.830 4.693 1.00 0.00 PROA
|
||||
ATOM 296 N GLU P 19 -7.472 3.665 5.929 1.00 0.00 PROA
|
||||
ATOM 297 HN GLU P 19 -7.070 4.355 6.526 1.00 0.00 PROA
|
||||
ATOM 298 CA GLU P 19 -8.928 3.784 5.629 1.00 0.00 PROA
|
||||
ATOM 299 HA GLU P 19 -9.328 2.792 5.478 1.00 0.00 PROA
|
||||
ATOM 300 CB GLU P 19 -9.627 4.475 6.800 1.00 0.00 PROA
|
||||
ATOM 301 HB1 GLU P 19 -10.239 5.322 6.424 1.00 0.00 PROA
|
||||
ATOM 302 HB2 GLU P 19 -8.869 4.868 7.510 1.00 0.00 PROA
|
||||
ATOM 303 CG GLU P 19 -10.527 3.464 7.513 1.00 0.00 PROA
|
||||
ATOM 304 HG1 GLU P 19 -9.914 2.625 7.907 1.00 0.00 PROA
|
||||
ATOM 305 HG2 GLU P 19 -11.280 3.062 6.802 1.00 0.00 PROA
|
||||
ATOM 306 CD GLU P 19 -11.244 4.157 8.673 1.00 0.00 PROA
|
||||
ATOM 307 OE1 GLU P 19 -10.552 4.850 9.401 1.00 0.00 PROA
|
||||
ATOM 308 OE2 GLU P 19 -12.443 3.954 8.767 1.00 0.00 PROA
|
||||
ATOM 309 C GLU P 19 -9.130 4.606 4.354 1.00 0.00 PROA
|
||||
ATOM 310 O GLU P 19 -8.688 5.735 4.266 1.00 0.00 PROA
|
||||
ATOM 311 N ALA P 20 -9.790 4.021 3.391 1.00 0.00 PROA
|
||||
ATOM 312 HN ALA P 20 -10.152 3.095 3.461 1.00 0.00 PROA
|
||||
ATOM 313 CA ALA P 20 -10.029 4.752 2.111 1.00 0.00 PROA
|
||||
ATOM 314 HA ALA P 20 -9.928 5.811 2.298 1.00 0.00 PROA
|
||||
ATOM 315 CB ALA P 20 -9.008 4.287 1.073 1.00 0.00 PROA
|
||||
ATOM 316 HB1 ALA P 20 -8.854 3.190 1.154 1.00 0.00 PROA
|
||||
ATOM 317 HB2 ALA P 20 -8.035 4.795 1.245 1.00 0.00 PROA
|
||||
ATOM 318 HB3 ALA P 20 -9.375 4.519 0.051 1.00 0.00 PROA
|
||||
ATOM 319 C ALA P 20 -11.446 4.473 1.598 1.00 0.00 PROA
|
||||
ATOM 320 O ALA P 20 -12.020 3.441 1.883 1.00 0.00 PROA
|
||||
ATOM 321 N VAL P 21 -11.978 5.402 0.852 1.00 0.00 PROA
|
||||
ATOM 322 HN VAL P 21 -11.508 6.249 0.615 1.00 0.00 PROA
|
||||
ATOM 323 CA VAL P 21 -13.357 5.212 0.315 1.00 0.00 PROA
|
||||
ATOM 324 HA VAL P 21 -13.919 4.616 1.019 1.00 0.00 PROA
|
||||
ATOM 325 CB VAL P 21 -14.011 6.579 0.122 1.00 0.00 PROA
|
||||
ATOM 326 HB VAL P 21 -14.390 6.954 1.097 1.00 0.00 PROA
|
||||
ATOM 327 CG1 VAL P 21 -12.975 7.556 -0.439 1.00 0.00 PROA
|
||||
ATOM 328 HG11 VAL P 21 -12.464 7.108 -1.318 1.00 0.00 PROA
|
||||
ATOM 329 HG12 VAL P 21 -12.212 7.784 0.336 1.00 0.00 PROA
|
||||
ATOM 330 HG13 VAL P 21 -13.475 8.495 -0.760 1.00 0.00 PROA
|
||||
ATOM 331 CG2 VAL P 21 -15.169 6.449 -0.869 1.00 0.00 PROA
|
||||
ATOM 332 HG21 VAL P 21 -15.831 5.607 -0.574 1.00 0.00 PROA
|
||||
ATOM 333 HG22 VAL P 21 -14.774 6.249 -1.888 1.00 0.00 PROA
|
||||
ATOM 334 HG23 VAL P 21 -15.767 7.385 -0.876 1.00 0.00 PROA
|
||||
ATOM 335 C VAL P 21 -13.311 4.475 -1.028 1.00 0.00 PROA
|
||||
ATOM 336 O VAL P 21 -14.244 3.788 -1.393 1.00 0.00 PROA
|
||||
ATOM 337 N ASP P 22 -12.223 4.635 -1.736 1.00 0.00 PROA
|
||||
ATOM 338 HN ASP P 22 -11.455 5.197 -1.439 1.00 0.00 PROA
|
||||
ATOM 339 CA ASP P 22 -12.102 3.952 -3.059 1.00 0.00 PROA
|
||||
ATOM 340 HA ASP P 22 -12.760 3.096 -3.063 1.00 0.00 PROA
|
||||
ATOM 341 CB ASP P 22 -12.486 4.934 -4.163 1.00 0.00 PROA
|
||||
ATOM 342 HB1 ASP P 22 -13.592 4.995 -4.245 1.00 0.00 PROA
|
||||
ATOM 343 HB2 ASP P 22 -12.068 4.592 -5.134 1.00 0.00 PROA
|
||||
ATOM 344 CG ASP P 22 -11.925 6.316 -3.828 1.00 0.00 PROA
|
||||
ATOM 345 OD1 ASP P 22 -11.033 6.349 -2.997 1.00 0.00 PROA
|
||||
ATOM 346 OD2 ASP P 22 -12.420 7.260 -4.422 1.00 0.00 PROA
|
||||
ATOM 347 C ASP P 22 -10.663 3.471 -3.281 1.00 0.00 PROA
|
||||
ATOM 348 O ASP P 22 -9.794 3.702 -2.464 1.00 0.00 PROA
|
||||
ATOM 349 N ALA P 23 -10.446 2.813 -4.387 1.00 0.00 PROA
|
||||
ATOM 350 HN ALA P 23 -11.157 2.626 -5.060 1.00 0.00 PROA
|
||||
ATOM 351 CA ALA P 23 -9.075 2.304 -4.683 1.00 0.00 PROA
|
||||
ATOM 352 HA ALA P 23 -8.665 1.880 -3.778 1.00 0.00 PROA
|
||||
ATOM 353 CB ALA P 23 -9.163 1.247 -5.783 1.00 0.00 PROA
|
||||
ATOM 354 HB1 ALA P 23 -9.758 1.634 -6.637 1.00 0.00 PROA
|
||||
ATOM 355 HB2 ALA P 23 -9.658 0.333 -5.391 1.00 0.00 PROA
|
||||
ATOM 356 HB3 ALA P 23 -8.144 0.994 -6.147 1.00 0.00 PROA
|
||||
ATOM 357 C ALA P 23 -8.168 3.449 -5.149 1.00 0.00 PROA
|
||||
ATOM 358 O ALA P 23 -7.017 3.524 -4.771 1.00 0.00 PROA
|
||||
ATOM 359 N ALA P 24 -8.708 4.317 -5.959 1.00 0.00 PROA
|
||||
ATOM 360 HN ALA P 24 -9.654 4.263 -6.270 1.00 0.00 PROA
|
||||
ATOM 361 CA ALA P 24 -7.886 5.458 -6.459 1.00 0.00 PROA
|
||||
ATOM 362 HA ALA P 24 -7.095 5.063 -7.079 1.00 0.00 PROA
|
||||
ATOM 363 CB ALA P 24 -8.779 6.404 -7.260 1.00 0.00 PROA
|
||||
ATOM 364 HB1 ALA P 24 -9.597 6.794 -6.617 1.00 0.00 PROA
|
||||
ATOM 365 HB2 ALA P 24 -9.231 5.862 -8.118 1.00 0.00 PROA
|
||||
ATOM 366 HB3 ALA P 24 -8.181 7.263 -7.633 1.00 0.00 PROA
|
||||
ATOM 367 C ALA P 24 -7.259 6.216 -5.287 1.00 0.00 PROA
|
||||
ATOM 368 O ALA P 24 -6.061 6.419 -5.245 1.00 0.00 PROA
|
||||
ATOM 369 N THR P 25 -8.080 6.621 -4.358 1.00 0.00 PROA
|
||||
ATOM 370 HN THR P 25 -9.063 6.459 -4.385 1.00 0.00 PROA
|
||||
ATOM 371 CA THR P 25 -7.539 7.367 -3.186 1.00 0.00 PROA
|
||||
ATOM 372 HA THR P 25 -6.955 8.198 -3.551 1.00 0.00 PROA
|
||||
ATOM 373 CB THR P 25 -8.702 7.863 -2.321 1.00 0.00 PROA
|
||||
ATOM 374 HB THR P 25 -9.550 8.207 -2.951 1.00 0.00 PROA
|
||||
ATOM 375 OG1 THR P 25 -8.164 8.955 -1.582 1.00 0.00 PROA
|
||||
ATOM 376 HG1 THR P 25 -8.880 9.281 -1.032 1.00 0.00 PROA
|
||||
ATOM 377 CG2 THR P 25 -9.107 6.829 -1.275 1.00 0.00 PROA
|
||||
ATOM 378 HG21 THR P 25 -8.317 6.741 -0.499 1.00 0.00 PROA
|
||||
ATOM 379 HG22 THR P 25 -9.243 5.837 -1.757 1.00 0.00 PROA
|
||||
ATOM 380 HG23 THR P 25 -10.054 7.139 -0.783 1.00 0.00 PROA
|
||||
ATOM 381 C THR P 25 -6.628 6.456 -2.356 1.00 0.00 PROA
|
||||
ATOM 382 O THR P 25 -5.731 6.920 -1.681 1.00 0.00 PROA
|
||||
ATOM 383 N ALA P 26 -6.878 5.175 -2.426 1.00 0.00 PROA
|
||||
ATOM 384 HN ALA P 26 -7.614 4.788 -2.976 1.00 0.00 PROA
|
||||
ATOM 385 CA ALA P 26 -6.028 4.225 -1.650 1.00 0.00 PROA
|
||||
ATOM 386 HA ALA P 26 -5.953 4.586 -0.635 1.00 0.00 PROA
|
||||
ATOM 387 CB ALA P 26 -6.664 2.836 -1.683 1.00 0.00 PROA
|
||||
ATOM 388 HB1 ALA P 26 -6.585 2.404 -2.704 1.00 0.00 PROA
|
||||
ATOM 389 HB2 ALA P 26 -7.739 2.906 -1.409 1.00 0.00 PROA
|
||||
ATOM 390 HB3 ALA P 26 -6.140 2.163 -0.971 1.00 0.00 PROA
|
||||
ATOM 391 C ALA P 26 -4.625 4.160 -2.263 1.00 0.00 PROA
|
||||
ATOM 392 O ALA P 26 -3.639 4.083 -1.557 1.00 0.00 PROA
|
||||
ATOM 393 N GLU P 27 -4.566 4.197 -3.569 1.00 0.00 PROA
|
||||
ATOM 394 HN GLU P 27 -5.373 4.262 -4.151 1.00 0.00 PROA
|
||||
ATOM 395 CA GLU P 27 -3.240 4.141 -4.246 1.00 0.00 PROA
|
||||
ATOM 396 HA GLU P 27 -2.743 3.229 -3.951 1.00 0.00 PROA
|
||||
ATOM 397 CB GLU P 27 -3.454 4.176 -5.758 1.00 0.00 PROA
|
||||
ATOM 398 HB1 GLU P 27 -2.481 4.341 -6.269 1.00 0.00 PROA
|
||||
ATOM 399 HB2 GLU P 27 -4.142 5.009 -6.019 1.00 0.00 PROA
|
||||
ATOM 400 CG GLU P 27 -4.058 2.847 -6.217 1.00 0.00 PROA
|
||||
ATOM 401 HG1 GLU P 27 -5.094 2.750 -5.829 1.00 0.00 PROA
|
||||
ATOM 402 HG2 GLU P 27 -3.445 2.003 -5.835 1.00 0.00 PROA
|
||||
ATOM 403 CD GLU P 27 -4.083 2.805 -7.746 1.00 0.00 PROA
|
||||
ATOM 404 OE1 GLU P 27 -3.856 3.857 -8.321 1.00 0.00 PROA
|
||||
ATOM 405 OE2 GLU P 27 -4.328 1.723 -8.254 1.00 0.00 PROA
|
||||
ATOM 406 C GLU P 27 -2.382 5.340 -3.828 1.00 0.00 PROA
|
||||
ATOM 407 O GLU P 27 -1.185 5.221 -3.659 1.00 0.00 PROA
|
||||
ATOM 408 N LYS P 28 -3.015 6.470 -3.673 1.00 0.00 PROA
|
||||
ATOM 409 HN LYS P 28 -3.998 6.570 -3.808 1.00 0.00 PROA
|
||||
ATOM 410 CA LYS P 28 -2.252 7.690 -3.273 1.00 0.00 PROA
|
||||
ATOM 411 HA LYS P 28 -1.295 7.675 -3.774 1.00 0.00 PROA
|
||||
ATOM 412 CB LYS P 28 -3.053 8.928 -3.673 1.00 0.00 PROA
|
||||
ATOM 413 HB1 LYS P 28 -2.532 9.843 -3.318 1.00 0.00 PROA
|
||||
ATOM 414 HB2 LYS P 28 -4.062 8.887 -3.211 1.00 0.00 PROA
|
||||
ATOM 415 CG LYS P 28 -3.184 8.967 -5.199 1.00 0.00 PROA
|
||||
ATOM 416 HG1 LYS P 28 -2.976 7.959 -5.617 1.00 0.00 PROA
|
||||
ATOM 417 HG2 LYS P 28 -2.450 9.688 -5.618 1.00 0.00 PROA
|
||||
ATOM 418 CD LYS P 28 -4.605 9.399 -5.579 1.00 0.00 PROA
|
||||
ATOM 419 HD1 LYS P 28 -5.340 8.686 -5.147 1.00 0.00 PROA
|
||||
ATOM 420 HD2 LYS P 28 -4.712 9.399 -6.685 1.00 0.00 PROA
|
||||
ATOM 421 CE LYS P 28 -4.873 10.806 -5.036 1.00 0.00 PROA
|
||||
ATOM 422 HE1 LYS P 28 -3.943 11.413 -5.076 1.00 0.00 PROA
|
||||
ATOM 423 HE2 LYS P 28 -5.246 10.746 -3.991 1.00 0.00 PROA
|
||||
ATOM 424 NZ LYS P 28 -5.909 11.492 -5.859 1.00 0.00 PROA
|
||||
ATOM 425 HZ1 LYS P 28 -6.793 10.945 -5.831 1.00 0.00 PROA
|
||||
ATOM 426 HZ2 LYS P 28 -5.578 11.566 -6.842 1.00 0.00 PROA
|
||||
ATOM 427 HZ3 LYS P 28 -6.079 12.445 -5.478 1.00 0.00 PROA
|
||||
ATOM 428 C LYS P 28 -2.012 7.701 -1.759 1.00 0.00 PROA
|
||||
ATOM 429 O LYS P 28 -0.940 8.046 -1.302 1.00 0.00 PROA
|
||||
ATOM 430 N VAL P 29 -3.013 7.323 -1.014 1.00 0.00 PROA
|
||||
ATOM 431 HN VAL P 29 -3.893 7.036 -1.383 1.00 0.00 PROA
|
||||
ATOM 432 CA VAL P 29 -2.856 7.312 0.469 1.00 0.00 PROA
|
||||
ATOM 433 HA VAL P 29 -2.684 8.325 0.802 1.00 0.00 PROA
|
||||
ATOM 434 CB VAL P 29 -4.124 6.745 1.100 1.00 0.00 PROA
|
||||
ATOM 435 HB VAL P 29 -4.441 5.834 0.549 1.00 0.00 PROA
|
||||
ATOM 436 CG1 VAL P 29 -3.845 6.393 2.562 1.00 0.00 PROA
|
||||
ATOM 437 HG11 VAL P 29 -3.206 7.173 3.027 1.00 0.00 PROA
|
||||
ATOM 438 HG12 VAL P 29 -3.315 5.418 2.622 1.00 0.00 PROA
|
||||
ATOM 439 HG13 VAL P 29 -4.800 6.335 3.126 1.00 0.00 PROA
|
||||
ATOM 440 CG2 VAL P 29 -5.233 7.797 1.037 1.00 0.00 PROA
|
||||
ATOM 441 HG21 VAL P 29 -5.200 8.329 0.062 1.00 0.00 PROA
|
||||
ATOM 442 HG22 VAL P 29 -5.096 8.540 1.851 1.00 0.00 PROA
|
||||
ATOM 443 HG23 VAL P 29 -6.225 7.307 1.140 1.00 0.00 PROA
|
||||
ATOM 444 C VAL P 29 -1.658 6.449 0.869 1.00 0.00 PROA
|
||||
ATOM 445 O VAL P 29 -0.759 6.907 1.548 1.00 0.00 PROA
|
||||
ATOM 446 N PHE P 30 -1.666 5.217 0.439 1.00 0.00 PROA
|
||||
ATOM 447 HN PHE P 30 -2.398 4.834 -0.119 1.00 0.00 PROA
|
||||
ATOM 448 CA PHE P 30 -0.528 4.320 0.792 1.00 0.00 PROA
|
||||
ATOM 449 HA PHE P 30 -0.426 4.308 1.867 1.00 0.00 PROA
|
||||
ATOM 450 CB PHE P 30 -0.802 2.909 0.262 1.00 0.00 PROA
|
||||
ATOM 451 HB1 PHE P 30 0.155 2.367 0.110 1.00 0.00 PROA
|
||||
ATOM 452 HB2 PHE P 30 -1.365 2.964 -0.694 1.00 0.00 PROA
|
||||
ATOM 453 CG PHE P 30 -1.647 2.113 1.269 1.00 0.00 PROA
|
||||
ATOM 454 CD1 PHE P 30 -1.175 1.860 2.549 1.00 0.00 PROA
|
||||
ATOM 455 HD1 PHE P 30 -0.204 2.228 2.846 1.00 0.00 PROA
|
||||
ATOM 456 CE1 PHE P 30 -1.941 1.139 3.447 1.00 0.00 PROA
|
||||
ATOM 457 HE1 PHE P 30 -1.567 0.948 4.442 1.00 0.00 PROA
|
||||
ATOM 458 CZ PHE P 30 -3.175 0.665 3.077 1.00 0.00 PROA
|
||||
ATOM 459 HZ PHE P 30 -3.770 0.099 3.779 1.00 0.00 PROA
|
||||
ATOM 460 CD2 PHE P 30 -2.895 1.631 0.911 1.00 0.00 PROA
|
||||
ATOM 461 HD2 PHE P 30 -3.279 1.820 -0.081 1.00 0.00 PROA
|
||||
ATOM 462 CE2 PHE P 30 -3.652 0.911 1.813 1.00 0.00 PROA
|
||||
ATOM 463 HE2 PHE P 30 -4.624 0.539 1.523 1.00 0.00 PROA
|
||||
ATOM 464 C PHE P 30 0.769 4.851 0.169 1.00 0.00 PROA
|
||||
ATOM 465 O PHE P 30 1.797 4.892 0.814 1.00 0.00 PROA
|
||||
ATOM 466 N LYS P 31 0.697 5.245 -1.075 1.00 0.00 PROA
|
||||
ATOM 467 HN LYS P 31 -0.141 5.214 -1.614 1.00 0.00 PROA
|
||||
ATOM 468 CA LYS P 31 1.924 5.773 -1.741 1.00 0.00 PROA
|
||||
ATOM 469 HA LYS P 31 2.643 4.971 -1.815 1.00 0.00 PROA
|
||||
ATOM 470 CB LYS P 31 1.560 6.300 -3.128 1.00 0.00 PROA
|
||||
ATOM 471 HB1 LYS P 31 0.797 7.102 -3.036 1.00 0.00 PROA
|
||||
ATOM 472 HB2 LYS P 31 1.141 5.476 -3.744 1.00 0.00 PROA
|
||||
ATOM 473 CG LYS P 31 2.818 6.858 -3.798 1.00 0.00 PROA
|
||||
ATOM 474 HG1 LYS P 31 3.716 6.553 -3.220 1.00 0.00 PROA
|
||||
ATOM 475 HG2 LYS P 31 2.768 7.968 -3.824 1.00 0.00 PROA
|
||||
ATOM 476 CD LYS P 31 2.913 6.313 -5.225 1.00 0.00 PROA
|
||||
ATOM 477 HD1 LYS P 31 1.946 6.466 -5.750 1.00 0.00 PROA
|
||||
ATOM 478 HD2 LYS P 31 3.138 5.225 -5.197 1.00 0.00 PROA
|
||||
ATOM 479 CE LYS P 31 4.027 7.051 -5.971 1.00 0.00 PROA
|
||||
ATOM 480 HE1 LYS P 31 4.328 6.475 -6.872 1.00 0.00 PROA
|
||||
ATOM 481 HE2 LYS P 31 4.901 7.197 -5.301 1.00 0.00 PROA
|
||||
ATOM 482 NZ LYS P 31 3.558 8.393 -6.417 1.00 0.00 PROA
|
||||
ATOM 483 HZ1 LYS P 31 3.277 8.956 -5.589 1.00 0.00 PROA
|
||||
ATOM 484 HZ2 LYS P 31 2.743 8.282 -7.053 1.00 0.00 PROA
|
||||
ATOM 485 HZ3 LYS P 31 4.327 8.879 -6.921 1.00 0.00 PROA
|
||||
ATOM 486 C LYS P 31 2.521 6.902 -0.903 1.00 0.00 PROA
|
||||
ATOM 487 O LYS P 31 3.724 7.036 -0.802 1.00 0.00 PROA
|
||||
ATOM 488 N GLN P 32 1.664 7.692 -0.318 1.00 0.00 PROA
|
||||
ATOM 489 HN GLN P 32 0.676 7.589 -0.405 1.00 0.00 PROA
|
||||
ATOM 490 CA GLN P 32 2.162 8.811 0.528 1.00 0.00 PROA
|
||||
ATOM 491 HA GLN P 32 2.870 9.387 -0.049 1.00 0.00 PROA
|
||||
ATOM 492 CB GLN P 32 0.977 9.679 0.954 1.00 0.00 PROA
|
||||
ATOM 493 HB1 GLN P 32 0.370 9.138 1.710 1.00 0.00 PROA
|
||||
ATOM 494 HB2 GLN P 32 0.338 9.899 0.072 1.00 0.00 PROA
|
||||
ATOM 495 CG GLN P 32 1.498 10.987 1.552 1.00 0.00 PROA
|
||||
ATOM 496 HG1 GLN P 32 2.470 10.809 2.059 1.00 0.00 PROA
|
||||
ATOM 497 HG2 GLN P 32 0.768 11.380 2.292 1.00 0.00 PROA
|
||||
ATOM 498 CD GLN P 32 1.689 12.012 0.432 1.00 0.00 PROA
|
||||
ATOM 499 OE1 GLN P 32 0.814 12.229 -0.382 1.00 0.00 PROA
|
||||
ATOM 500 NE2 GLN P 32 2.817 12.664 0.356 1.00 0.00 PROA
|
||||
ATOM 501 HE21 GLN P 32 2.957 13.337 -0.370 1.00 0.00 PROA
|
||||
ATOM 502 HE22 GLN P 32 3.541 12.490 1.024 1.00 0.00 PROA
|
||||
ATOM 503 C GLN P 32 2.864 8.248 1.766 1.00 0.00 PROA
|
||||
ATOM 504 O GLN P 32 3.748 8.870 2.321 1.00 0.00 PROA
|
||||
ATOM 505 N TYR P 33 2.453 7.076 2.171 1.00 0.00 PROA
|
||||
ATOM 506 HN TYR P 33 1.726 6.565 1.719 1.00 0.00 PROA
|
||||
ATOM 507 CA TYR P 33 3.087 6.449 3.367 1.00 0.00 PROA
|
||||
ATOM 508 HA TYR P 33 3.263 7.219 4.104 1.00 0.00 PROA
|
||||
ATOM 509 CB TYR P 33 2.153 5.373 3.922 1.00 0.00 PROA
|
||||
ATOM 510 HB1 TYR P 33 1.898 4.637 3.130 1.00 0.00 PROA
|
||||
ATOM 511 HB2 TYR P 33 1.227 5.836 4.326 1.00 0.00 PROA
|
||||
ATOM 512 CG TYR P 33 2.858 4.632 5.060 1.00 0.00 PROA
|
||||
ATOM 513 CD1 TYR P 33 3.761 3.627 4.784 1.00 0.00 PROA
|
||||
ATOM 514 HD1 TYR P 33 3.972 3.363 3.758 1.00 0.00 PROA
|
||||
ATOM 515 CE1 TYR P 33 4.397 2.957 5.808 1.00 0.00 PROA
|
||||
ATOM 516 HE1 TYR P 33 5.101 2.171 5.578 1.00 0.00 PROA
|
||||
ATOM 517 CZ TYR P 33 4.141 3.283 7.124 1.00 0.00 PROA
|
||||
ATOM 518 OH TYR P 33 4.779 2.613 8.148 1.00 0.00 PROA
|
||||
ATOM 519 HH TYR P 33 5.566 2.198 7.786 1.00 0.00 PROA
|
||||
ATOM 520 CD2 TYR P 33 2.601 4.959 6.376 1.00 0.00 PROA
|
||||
ATOM 521 HD2 TYR P 33 1.896 5.745 6.606 1.00 0.00 PROA
|
||||
ATOM 522 CE2 TYR P 33 3.238 4.289 7.400 1.00 0.00 PROA
|
||||
ATOM 523 HE2 TYR P 33 3.028 4.554 8.426 1.00 0.00 PROA
|
||||
ATOM 524 C TYR P 33 4.428 5.815 2.979 1.00 0.00 PROA
|
||||
ATOM 525 O TYR P 33 5.450 6.110 3.566 1.00 0.00 PROA
|
||||
ATOM 526 N ALA P 34 4.392 4.958 1.998 1.00 0.00 PROA
|
||||
ATOM 527 HN ALA P 34 3.554 4.713 1.517 1.00 0.00 PROA
|
||||
ATOM 528 CA ALA P 34 5.655 4.296 1.553 1.00 0.00 PROA
|
||||
ATOM 529 HA ALA P 34 5.977 3.617 2.328 1.00 0.00 PROA
|
||||
ATOM 530 CB ALA P 34 5.391 3.543 0.251 1.00 0.00 PROA
|
||||
ATOM 531 HB1 ALA P 34 4.590 4.051 -0.328 1.00 0.00 PROA
|
||||
ATOM 532 HB2 ALA P 34 5.064 2.505 0.474 1.00 0.00 PROA
|
||||
ATOM 533 HB3 ALA P 34 6.315 3.519 -0.366 1.00 0.00 PROA
|
||||
ATOM 534 C ALA P 34 6.747 5.346 1.321 1.00 0.00 PROA
|
||||
ATOM 535 O ALA P 34 7.920 5.072 1.481 1.00 0.00 PROA
|
||||
ATOM 536 N ASN P 35 6.335 6.526 0.948 1.00 0.00 PROA
|
||||
ATOM 537 HN ASN P 35 5.373 6.753 0.817 1.00 0.00 PROA
|
||||
ATOM 538 CA ASN P 35 7.333 7.607 0.699 1.00 0.00 PROA
|
||||
ATOM 539 HA ASN P 35 8.067 7.240 -0.003 1.00 0.00 PROA
|
||||
ATOM 540 CB ASN P 35 6.612 8.830 0.136 1.00 0.00 PROA
|
||||
ATOM 541 HB1 ASN P 35 5.985 9.295 0.927 1.00 0.00 PROA
|
||||
ATOM 542 HB2 ASN P 35 5.962 8.527 -0.712 1.00 0.00 PROA
|
||||
ATOM 543 CG ASN P 35 7.646 9.846 -0.355 1.00 0.00 PROA
|
||||
ATOM 544 OD1 ASN P 35 8.378 9.599 -1.293 1.00 0.00 PROA
|
||||
ATOM 545 ND2 ASN P 35 7.739 10.998 0.251 1.00 0.00 PROA
|
||||
ATOM 546 HD21 ASN P 35 8.409 11.673 -0.058 1.00 0.00 PROA
|
||||
ATOM 547 HD22 ASN P 35 7.140 11.206 1.024 1.00 0.00 PROA
|
||||
ATOM 548 C ASN P 35 8.040 7.987 2.004 1.00 0.00 PROA
|
||||
ATOM 549 O ASN P 35 9.203 8.340 2.004 1.00 0.00 PROA
|
||||
ATOM 550 N ASP P 36 7.321 7.905 3.090 1.00 0.00 PROA
|
||||
ATOM 551 HN ASP P 36 6.368 7.613 3.095 1.00 0.00 PROA
|
||||
ATOM 552 CA ASP P 36 7.935 8.261 4.404 1.00 0.00 PROA
|
||||
ATOM 553 HA ASP P 36 8.432 9.214 4.302 1.00 0.00 PROA
|
||||
ATOM 554 CB ASP P 36 6.839 8.336 5.465 1.00 0.00 PROA
|
||||
ATOM 555 HB1 ASP P 36 7.288 8.246 6.477 1.00 0.00 PROA
|
||||
ATOM 556 HB2 ASP P 36 6.111 7.510 5.314 1.00 0.00 PROA
|
||||
ATOM 557 CG ASP P 36 6.114 9.679 5.349 1.00 0.00 PROA
|
||||
ATOM 558 OD1 ASP P 36 6.773 10.673 5.604 1.00 0.00 PROA
|
||||
ATOM 559 OD2 ASP P 36 4.942 9.634 5.012 1.00 0.00 PROA
|
||||
ATOM 560 C ASP P 36 8.973 7.208 4.814 1.00 0.00 PROA
|
||||
ATOM 561 O ASP P 36 9.514 7.262 5.902 1.00 0.00 PROA
|
||||
ATOM 562 N ASN P 37 9.223 6.272 3.932 1.00 0.00 PROA
|
||||
ATOM 563 HN ASN P 37 8.774 6.228 3.043 1.00 0.00 PROA
|
||||
ATOM 564 CA ASN P 37 10.226 5.203 4.244 1.00 0.00 PROA
|
||||
ATOM 565 HA ASN P 37 10.768 5.492 5.132 1.00 0.00 PROA
|
||||
ATOM 566 CB ASN P 37 9.496 3.878 4.465 1.00 0.00 PROA
|
||||
ATOM 567 HB1 ASN P 37 10.234 3.060 4.607 1.00 0.00 PROA
|
||||
ATOM 568 HB2 ASN P 37 8.861 3.646 3.584 1.00 0.00 PROA
|
||||
ATOM 569 CG ASN P 37 8.615 3.988 5.711 1.00 0.00 PROA
|
||||
ATOM 570 OD1 ASN P 37 8.880 3.378 6.728 1.00 0.00 PROA
|
||||
ATOM 571 ND2 ASN P 37 7.559 4.754 5.675 1.00 0.00 PROA
|
||||
ATOM 572 HD21 ASN P 37 6.973 4.836 6.481 1.00 0.00 PROA
|
||||
ATOM 573 HD22 ASN P 37 7.336 5.259 4.841 1.00 0.00 PROA
|
||||
ATOM 574 C ASN P 37 11.217 5.050 3.084 1.00 0.00 PROA
|
||||
ATOM 575 O ASN P 37 12.339 4.625 3.277 1.00 0.00 PROA
|
||||
ATOM 576 N GLY P 38 10.778 5.401 1.903 1.00 0.00 PROA
|
||||
ATOM 577 HN GLY P 38 9.857 5.749 1.744 1.00 0.00 PROA
|
||||
ATOM 578 CA GLY P 38 11.677 5.286 0.718 1.00 0.00 PROA
|
||||
ATOM 579 HA1 GLY P 38 12.698 5.232 1.067 1.00 0.00 PROA
|
||||
ATOM 580 HA2 GLY P 38 11.541 6.160 0.099 1.00 0.00 PROA
|
||||
ATOM 581 C GLY P 38 11.343 4.029 -0.088 1.00 0.00 PROA
|
||||
ATOM 582 O GLY P 38 12.215 3.240 -0.398 1.00 0.00 PROA
|
||||
ATOM 583 N VAL P 39 10.082 3.872 -0.408 1.00 0.00 PROA
|
||||
ATOM 584 HN VAL P 39 9.371 4.521 -0.148 1.00 0.00 PROA
|
||||
ATOM 585 CA VAL P 39 9.654 2.674 -1.200 1.00 0.00 PROA
|
||||
ATOM 586 HA VAL P 39 10.538 2.146 -1.527 1.00 0.00 PROA
|
||||
ATOM 587 CB VAL P 39 8.785 1.778 -0.316 1.00 0.00 PROA
|
||||
ATOM 588 HB VAL P 39 7.810 2.275 -0.122 1.00 0.00 PROA
|
||||
ATOM 589 CG1 VAL P 39 8.551 0.443 -1.028 1.00 0.00 PROA
|
||||
ATOM 590 HG11 VAL P 39 9.518 0.024 -1.381 1.00 0.00 PROA
|
||||
ATOM 591 HG12 VAL P 39 7.888 0.594 -1.906 1.00 0.00 PROA
|
||||
ATOM 592 HG13 VAL P 39 8.085 -0.282 -0.328 1.00 0.00 PROA
|
||||
ATOM 593 CG2 VAL P 39 9.510 1.523 1.007 1.00 0.00 PROA
|
||||
ATOM 594 HG21 VAL P 39 9.539 2.454 1.612 1.00 0.00 PROA
|
||||
ATOM 595 HG22 VAL P 39 10.553 1.196 0.810 1.00 0.00 PROA
|
||||
ATOM 596 HG23 VAL P 39 8.976 0.740 1.586 1.00 0.00 PROA
|
||||
ATOM 597 C VAL P 39 8.848 3.117 -2.426 1.00 0.00 PROA
|
||||
ATOM 598 O VAL P 39 7.652 3.318 -2.344 1.00 0.00 PROA
|
||||
ATOM 599 N ASP P 40 9.528 3.258 -3.538 1.00 0.00 PROA
|
||||
ATOM 600 HN ASP P 40 10.509 3.090 -3.602 1.00 0.00 PROA
|
||||
ATOM 601 CA ASP P 40 8.827 3.690 -4.789 1.00 0.00 PROA
|
||||
ATOM 602 HA ASP P 40 7.762 3.601 -4.632 1.00 0.00 PROA
|
||||
ATOM 603 CB ASP P 40 9.208 5.139 -5.101 1.00 0.00 PROA
|
||||
ATOM 604 HB1 ASP P 40 8.693 5.473 -6.027 1.00 0.00 PROA
|
||||
ATOM 605 HB2 ASP P 40 10.307 5.216 -5.247 1.00 0.00 PROA
|
||||
ATOM 606 CG ASP P 40 8.787 6.035 -3.935 1.00 0.00 PROA
|
||||
ATOM 607 OD1 ASP P 40 9.169 5.697 -2.827 1.00 0.00 PROA
|
||||
ATOM 608 OD2 ASP P 40 8.107 7.008 -4.219 1.00 0.00 PROA
|
||||
ATOM 609 C ASP P 40 9.236 2.793 -5.962 1.00 0.00 PROA
|
||||
ATOM 610 O ASP P 40 10.392 2.738 -6.332 1.00 0.00 PROA
|
||||
ATOM 611 N GLY P 41 8.275 2.108 -6.519 1.00 0.00 PROA
|
||||
ATOM 612 HN GLY P 41 7.327 2.149 -6.214 1.00 0.00 PROA
|
||||
ATOM 613 CA GLY P 41 8.583 1.213 -7.670 1.00 0.00 PROA
|
||||
ATOM 614 HA1 GLY P 41 9.151 0.369 -7.307 1.00 0.00 PROA
|
||||
ATOM 615 HA2 GLY P 41 9.162 1.769 -8.392 1.00 0.00 PROA
|
||||
ATOM 616 C GLY P 41 7.287 0.722 -8.317 1.00 0.00 PROA
|
||||
ATOM 617 O GLY P 41 6.571 1.487 -8.932 1.00 0.00 PROA
|
||||
ATOM 618 N GLU P 42 7.014 -0.545 -8.162 1.00 0.00 PROA
|
||||
ATOM 619 HN GLU P 42 7.604 -1.174 -7.661 1.00 0.00 PROA
|
||||
ATOM 620 CA GLU P 42 5.765 -1.105 -8.753 1.00 0.00 PROA
|
||||
ATOM 621 HA GLU P 42 5.430 -0.441 -9.536 1.00 0.00 PROA
|
||||
ATOM 622 CB GLU P 42 6.054 -2.489 -9.311 1.00 0.00 PROA
|
||||
ATOM 623 HB1 GLU P 42 5.161 -2.869 -9.852 1.00 0.00 PROA
|
||||
ATOM 624 HB2 GLU P 42 6.293 -3.186 -8.479 1.00 0.00 PROA
|
||||
ATOM 625 CG GLU P 42 7.242 -2.407 -10.272 1.00 0.00 PROA
|
||||
ATOM 626 HG1 GLU P 42 8.083 -3.021 -9.885 1.00 0.00 PROA
|
||||
ATOM 627 HG2 GLU P 42 7.576 -1.352 -10.369 1.00 0.00 PROA
|
||||
ATOM 628 CD GLU P 42 6.818 -2.934 -11.644 1.00 0.00 PROA
|
||||
ATOM 629 OE1 GLU P 42 6.254 -2.140 -12.379 1.00 0.00 PROA
|
||||
ATOM 630 OE2 GLU P 42 7.081 -4.102 -11.880 1.00 0.00 PROA
|
||||
ATOM 631 C GLU P 42 4.692 -1.213 -7.673 1.00 0.00 PROA
|
||||
ATOM 632 O GLU P 42 5.001 -1.443 -6.522 1.00 0.00 PROA
|
||||
ATOM 633 N TRP P 43 3.457 -1.056 -8.070 1.00 0.00 PROA
|
||||
ATOM 634 HN TRP P 43 3.207 -0.886 -9.020 1.00 0.00 PROA
|
||||
ATOM 635 CA TRP P 43 2.343 -1.130 -7.075 1.00 0.00 PROA
|
||||
ATOM 636 HA TRP P 43 2.751 -1.433 -6.122 1.00 0.00 PROA
|
||||
ATOM 637 CB TRP P 43 1.697 0.244 -6.975 1.00 0.00 PROA
|
||||
ATOM 638 HB1 TRP P 43 0.683 0.156 -6.529 1.00 0.00 PROA
|
||||
ATOM 639 HB2 TRP P 43 1.613 0.699 -7.985 1.00 0.00 PROA
|
||||
ATOM 640 CG TRP P 43 2.573 1.127 -6.086 1.00 0.00 PROA
|
||||
ATOM 641 CD1 TRP P 43 3.740 1.623 -6.479 1.00 0.00 PROA
|
||||
ATOM 642 HD1 TRP P 43 4.222 1.510 -7.437 1.00 0.00 PROA
|
||||
ATOM 643 NE1 TRP P 43 4.179 2.297 -5.406 1.00 0.00 PROA
|
||||
ATOM 644 HE1 TRP P 43 5.027 2.777 -5.396 1.00 0.00 PROA
|
||||
ATOM 645 CE2 TRP P 43 3.336 2.255 -4.322 1.00 0.00 PROA
|
||||
ATOM 646 CD2 TRP P 43 2.306 1.476 -4.830 1.00 0.00 PROA
|
||||
ATOM 647 CE3 TRP P 43 1.220 1.177 -4.011 1.00 0.00 PROA
|
||||
ATOM 648 HE3 TRP P 43 0.401 0.575 -4.374 1.00 0.00 PROA
|
||||
ATOM 649 CZ3 TRP P 43 1.176 1.650 -2.715 1.00 0.00 PROA
|
||||
ATOM 650 HZ3 TRP P 43 0.332 1.414 -2.084 1.00 0.00 PROA
|
||||
ATOM 651 CZ2 TRP P 43 3.284 2.724 -3.026 1.00 0.00 PROA
|
||||
ATOM 652 HZ2 TRP P 43 4.081 3.331 -2.623 1.00 0.00 PROA
|
||||
ATOM 653 CH2 TRP P 43 2.205 2.421 -2.224 1.00 0.00 PROA
|
||||
ATOM 654 HH2 TRP P 43 2.167 2.789 -1.209 1.00 0.00 PROA
|
||||
ATOM 655 C TRP P 43 1.302 -2.160 -7.508 1.00 0.00 PROA
|
||||
ATOM 656 O TRP P 43 0.940 -2.232 -8.665 1.00 0.00 PROA
|
||||
ATOM 657 N THR P 44 0.846 -2.936 -6.556 1.00 0.00 PROA
|
||||
ATOM 658 HN THR P 44 1.148 -2.869 -5.608 1.00 0.00 PROA
|
||||
ATOM 659 CA THR P 44 -0.177 -3.982 -6.872 1.00 0.00 PROA
|
||||
ATOM 660 HA THR P 44 -0.449 -3.891 -7.913 1.00 0.00 PROA
|
||||
ATOM 661 CB THR P 44 0.417 -5.364 -6.586 1.00 0.00 PROA
|
||||
ATOM 662 HB THR P 44 -0.384 -6.119 -6.436 1.00 0.00 PROA
|
||||
ATOM 663 OG1 THR P 44 1.166 -5.198 -5.386 1.00 0.00 PROA
|
||||
ATOM 664 HG1 THR P 44 0.937 -4.328 -5.050 1.00 0.00 PROA
|
||||
ATOM 665 CG2 THR P 44 1.438 -5.765 -7.646 1.00 0.00 PROA
|
||||
ATOM 666 HG21 THR P 44 2.271 -5.030 -7.671 1.00 0.00 PROA
|
||||
ATOM 667 HG22 THR P 44 0.955 -5.789 -8.646 1.00 0.00 PROA
|
||||
ATOM 668 HG23 THR P 44 1.856 -6.767 -7.409 1.00 0.00 PROA
|
||||
ATOM 669 C THR P 44 -1.437 -3.780 -6.019 1.00 0.00 PROA
|
||||
ATOM 670 O THR P 44 -1.434 -3.037 -5.058 1.00 0.00 PROA
|
||||
ATOM 671 N TYR P 45 -2.486 -4.453 -6.402 1.00 0.00 PROA
|
||||
ATOM 672 HN TYR P 45 -2.481 -5.060 -7.193 1.00 0.00 PROA
|
||||
ATOM 673 CA TYR P 45 -3.771 -4.336 -5.649 1.00 0.00 PROA
|
||||
ATOM 674 HA TYR P 45 -3.558 -3.974 -4.654 1.00 0.00 PROA
|
||||
ATOM 675 CB TYR P 45 -4.683 -3.354 -6.409 1.00 0.00 PROA
|
||||
ATOM 676 HB1 TYR P 45 -5.144 -3.869 -7.279 1.00 0.00 PROA
|
||||
ATOM 677 HB2 TYR P 45 -4.088 -2.482 -6.754 1.00 0.00 PROA
|
||||
ATOM 678 CG TYR P 45 -5.834 -2.816 -5.514 1.00 0.00 PROA
|
||||
ATOM 679 CD1 TYR P 45 -6.710 -3.665 -4.843 1.00 0.00 PROA
|
||||
ATOM 680 HD1 TYR P 45 -6.598 -4.735 -4.938 1.00 0.00 PROA
|
||||
ATOM 681 CE1 TYR P 45 -7.721 -3.149 -4.057 1.00 0.00 PROA
|
||||
ATOM 682 HE1 TYR P 45 -8.390 -3.819 -3.538 1.00 0.00 PROA
|
||||
ATOM 683 CZ TYR P 45 -7.884 -1.789 -3.928 1.00 0.00 PROA
|
||||
ATOM 684 OH TYR P 45 -8.900 -1.276 -3.148 1.00 0.00 PROA
|
||||
ATOM 685 HH TYR P 45 -9.563 -1.961 -3.036 1.00 0.00 PROA
|
||||
ATOM 686 CD2 TYR P 45 -6.009 -1.456 -5.377 1.00 0.00 PROA
|
||||
ATOM 687 HD2 TYR P 45 -5.342 -0.779 -5.890 1.00 0.00 PROA
|
||||
ATOM 688 CE2 TYR P 45 -7.024 -0.948 -4.594 1.00 0.00 PROA
|
||||
ATOM 689 HE2 TYR P 45 -7.145 0.121 -4.503 1.00 0.00 PROA
|
||||
ATOM 690 C TYR P 45 -4.430 -5.718 -5.575 1.00 0.00 PROA
|
||||
ATOM 691 O TYR P 45 -4.613 -6.372 -6.583 1.00 0.00 PROA
|
||||
ATOM 692 N ASP P 46 -4.769 -6.130 -4.381 1.00 0.00 PROA
|
||||
ATOM 693 HN ASP P 46 -4.610 -5.595 -3.555 1.00 0.00 PROA
|
||||
ATOM 694 CA ASP P 46 -5.428 -7.463 -4.213 1.00 0.00 PROA
|
||||
ATOM 695 HA ASP P 46 -5.326 -8.014 -5.136 1.00 0.00 PROA
|
||||
ATOM 696 CB ASP P 46 -4.758 -8.209 -3.063 1.00 0.00 PROA
|
||||
ATOM 697 HB1 ASP P 46 -5.134 -7.821 -2.092 1.00 0.00 PROA
|
||||
ATOM 698 HB2 ASP P 46 -3.657 -8.065 -3.111 1.00 0.00 PROA
|
||||
ATOM 699 CG ASP P 46 -5.079 -9.701 -3.171 1.00 0.00 PROA
|
||||
ATOM 700 OD1 ASP P 46 -5.981 -10.007 -3.934 1.00 0.00 PROA
|
||||
ATOM 701 OD2 ASP P 46 -4.404 -10.450 -2.485 1.00 0.00 PROA
|
||||
ATOM 702 C ASP P 46 -6.918 -7.275 -3.896 1.00 0.00 PROA
|
||||
ATOM 703 O ASP P 46 -7.348 -7.468 -2.776 1.00 0.00 PROA
|
||||
ATOM 704 N ASP P 47 -7.675 -6.902 -4.890 1.00 0.00 PROA
|
||||
ATOM 705 HN ASP P 47 -7.331 -6.745 -5.812 1.00 0.00 PROA
|
||||
ATOM 706 CA ASP P 47 -9.135 -6.693 -4.658 1.00 0.00 PROA
|
||||
ATOM 707 HA ASP P 47 -9.255 -6.014 -3.827 1.00 0.00 PROA
|
||||
ATOM 708 CB ASP P 47 -9.765 -6.113 -5.924 1.00 0.00 PROA
|
||||
ATOM 709 HB1 ASP P 47 -9.872 -6.910 -6.691 1.00 0.00 PROA
|
||||
ATOM 710 HB2 ASP P 47 -9.121 -5.302 -6.328 1.00 0.00 PROA
|
||||
ATOM 711 CG ASP P 47 -11.145 -5.545 -5.587 1.00 0.00 PROA
|
||||
ATOM 712 OD1 ASP P 47 -11.204 -4.803 -4.621 1.00 0.00 PROA
|
||||
ATOM 713 OD2 ASP P 47 -12.063 -5.887 -6.314 1.00 0.00 PROA
|
||||
ATOM 714 C ASP P 47 -9.817 -8.022 -4.309 1.00 0.00 PROA
|
||||
ATOM 715 O ASP P 47 -11.022 -8.087 -4.169 1.00 0.00 PROA
|
||||
ATOM 716 N ALA P 48 -9.029 -9.055 -4.174 1.00 0.00 PROA
|
||||
ATOM 717 HN ALA P 48 -8.040 -9.008 -4.287 1.00 0.00 PROA
|
||||
ATOM 718 CA ALA P 48 -9.617 -10.385 -3.833 1.00 0.00 PROA
|
||||
ATOM 719 HA ALA P 48 -10.605 -10.443 -4.266 1.00 0.00 PROA
|
||||
ATOM 720 CB ALA P 48 -8.717 -11.486 -4.391 1.00 0.00 PROA
|
||||
ATOM 721 HB1 ALA P 48 -7.763 -11.523 -3.823 1.00 0.00 PROA
|
||||
ATOM 722 HB2 ALA P 48 -8.487 -11.281 -5.458 1.00 0.00 PROA
|
||||
ATOM 723 HB3 ALA P 48 -9.223 -12.471 -4.299 1.00 0.00 PROA
|
||||
ATOM 724 C ALA P 48 -9.733 -10.543 -2.313 1.00 0.00 PROA
|
||||
ATOM 725 O ALA P 48 -10.513 -11.338 -1.828 1.00 0.00 PROA
|
||||
ATOM 726 N THR P 49 -8.953 -9.783 -1.593 1.00 0.00 PROA
|
||||
ATOM 727 HN THR P 49 -8.311 -9.129 -1.986 1.00 0.00 PROA
|
||||
ATOM 728 CA THR P 49 -9.008 -9.880 -0.103 1.00 0.00 PROA
|
||||
ATOM 729 HA THR P 49 -9.991 -10.226 0.181 1.00 0.00 PROA
|
||||
ATOM 730 CB THR P 49 -7.931 -10.858 0.378 1.00 0.00 PROA
|
||||
ATOM 731 HB THR P 49 -7.905 -10.909 1.487 1.00 0.00 PROA
|
||||
ATOM 732 OG1 THR P 49 -6.708 -10.324 -0.119 1.00 0.00 PROA
|
||||
ATOM 733 HG1 THR P 49 -6.660 -10.587 -1.041 1.00 0.00 PROA
|
||||
ATOM 734 CG2 THR P 49 -8.073 -12.227 -0.285 1.00 0.00 PROA
|
||||
ATOM 735 HG21 THR P 49 -7.802 -12.160 -1.360 1.00 0.00 PROA
|
||||
ATOM 736 HG22 THR P 49 -9.124 -12.579 -0.205 1.00 0.00 PROA
|
||||
ATOM 737 HG23 THR P 49 -7.395 -12.957 0.207 1.00 0.00 PROA
|
||||
ATOM 738 C THR P 49 -8.765 -8.503 0.526 1.00 0.00 PROA
|
||||
ATOM 739 O THR P 49 -8.463 -8.398 1.698 1.00 0.00 PROA
|
||||
ATOM 740 N LYS P 50 -8.900 -7.477 -0.270 1.00 0.00 PROA
|
||||
ATOM 741 HN LYS P 50 -9.146 -7.561 -1.232 1.00 0.00 PROA
|
||||
ATOM 742 CA LYS P 50 -8.681 -6.098 0.261 1.00 0.00 PROA
|
||||
ATOM 743 HA LYS P 50 -8.734 -5.403 -0.564 1.00 0.00 PROA
|
||||
ATOM 744 CB LYS P 50 -9.754 -5.779 1.304 1.00 0.00 PROA
|
||||
ATOM 745 HB1 LYS P 50 -9.674 -4.714 1.610 1.00 0.00 PROA
|
||||
ATOM 746 HB2 LYS P 50 -9.609 -6.421 2.199 1.00 0.00 PROA
|
||||
ATOM 747 CG LYS P 50 -11.137 -6.040 0.700 1.00 0.00 PROA
|
||||
ATOM 748 HG1 LYS P 50 -11.189 -7.083 0.320 1.00 0.00 PROA
|
||||
ATOM 749 HG2 LYS P 50 -11.315 -5.341 -0.145 1.00 0.00 PROA
|
||||
ATOM 750 CD LYS P 50 -12.204 -5.829 1.777 1.00 0.00 PROA
|
||||
ATOM 751 HD1 LYS P 50 -13.042 -5.229 1.363 1.00 0.00 PROA
|
||||
ATOM 752 HD2 LYS P 50 -11.764 -5.284 2.639 1.00 0.00 PROA
|
||||
ATOM 753 CE LYS P 50 -12.722 -7.192 2.237 1.00 0.00 PROA
|
||||
ATOM 754 HE1 LYS P 50 -13.261 -7.695 1.406 1.00 0.00 PROA
|
||||
ATOM 755 HE2 LYS P 50 -13.397 -7.068 3.110 1.00 0.00 PROA
|
||||
ATOM 756 NZ LYS P 50 -11.588 -8.065 2.649 1.00 0.00 PROA
|
||||
ATOM 757 HZ1 LYS P 50 -11.286 -7.811 3.611 1.00 0.00 PROA
|
||||
ATOM 758 HZ2 LYS P 50 -10.793 -7.935 1.991 1.00 0.00 PROA
|
||||
ATOM 759 HZ3 LYS P 50 -11.892 -9.059 2.632 1.00 0.00 PROA
|
||||
ATOM 760 C LYS P 50 -7.292 -5.994 0.899 1.00 0.00 PROA
|
||||
ATOM 761 O LYS P 50 -7.162 -5.705 2.072 1.00 0.00 PROA
|
||||
ATOM 762 N THR P 51 -6.288 -6.235 0.103 1.00 0.00 PROA
|
||||
ATOM 763 HN THR P 51 -6.402 -6.471 -0.859 1.00 0.00 PROA
|
||||
ATOM 764 CA THR P 51 -4.889 -6.164 0.622 1.00 0.00 PROA
|
||||
ATOM 765 HA THR P 51 -4.893 -5.621 1.555 1.00 0.00 PROA
|
||||
ATOM 766 CB THR P 51 -4.382 -7.596 0.825 1.00 0.00 PROA
|
||||
ATOM 767 HB THR P 51 -4.060 -8.046 -0.138 1.00 0.00 PROA
|
||||
ATOM 768 OG1 THR P 51 -5.500 -8.305 1.349 1.00 0.00 PROA
|
||||
ATOM 769 HG1 THR P 51 -5.784 -8.903 0.654 1.00 0.00 PROA
|
||||
ATOM 770 CG2 THR P 51 -3.313 -7.681 1.906 1.00 0.00 PROA
|
||||
ATOM 771 HG21 THR P 51 -3.765 -7.501 2.905 1.00 0.00 PROA
|
||||
ATOM 772 HG22 THR P 51 -2.531 -6.912 1.726 1.00 0.00 PROA
|
||||
ATOM 773 HG23 THR P 51 -2.852 -8.692 1.903 1.00 0.00 PROA
|
||||
ATOM 774 C THR P 51 -3.991 -5.450 -0.405 1.00 0.00 PROA
|
||||
ATOM 775 O THR P 51 -3.755 -5.966 -1.479 1.00 0.00 PROA
|
||||
ATOM 776 N PHE P 52 -3.508 -4.279 -0.063 1.00 0.00 PROA
|
||||
ATOM 777 HN PHE P 52 -3.697 -3.838 0.811 1.00 0.00 PROA
|
||||
ATOM 778 CA PHE P 52 -2.630 -3.559 -1.021 1.00 0.00 PROA
|
||||
ATOM 779 HA PHE P 52 -3.038 -3.680 -2.013 1.00 0.00 PROA
|
||||
ATOM 780 CB PHE P 52 -2.568 -2.091 -0.645 1.00 0.00 PROA
|
||||
ATOM 781 HB1 PHE P 52 -1.511 -1.761 -0.554 1.00 0.00 PROA
|
||||
ATOM 782 HB2 PHE P 52 -3.106 -1.915 0.311 1.00 0.00 PROA
|
||||
ATOM 783 CG PHE P 52 -3.239 -1.259 -1.734 1.00 0.00 PROA
|
||||
ATOM 784 CD1 PHE P 52 -2.548 -0.886 -2.874 1.00 0.00 PROA
|
||||
ATOM 785 HD1 PHE P 52 -1.519 -1.189 -3.003 1.00 0.00 PROA
|
||||
ATOM 786 CE1 PHE P 52 -3.170 -0.128 -3.846 1.00 0.00 PROA
|
||||
ATOM 787 HE1 PHE P 52 -2.632 0.153 -4.740 1.00 0.00 PROA
|
||||
ATOM 788 CZ PHE P 52 -4.475 0.269 -3.674 1.00 0.00 PROA
|
||||
ATOM 789 HZ PHE P 52 -4.959 0.877 -4.424 1.00 0.00 PROA
|
||||
ATOM 790 CD2 PHE P 52 -4.545 -0.870 -1.588 1.00 0.00 PROA
|
||||
ATOM 791 HD2 PHE P 52 -5.095 -1.167 -0.707 1.00 0.00 PROA
|
||||
ATOM 792 CE2 PHE P 52 -5.162 -0.108 -2.547 1.00 0.00 PROA
|
||||
ATOM 793 HE2 PHE P 52 -6.190 0.196 -2.415 1.00 0.00 PROA
|
||||
ATOM 794 C PHE P 52 -1.220 -4.148 -0.952 1.00 0.00 PROA
|
||||
ATOM 795 O PHE P 52 -0.878 -4.820 0.000 1.00 0.00 PROA
|
||||
ATOM 796 N THR P 53 -0.429 -3.891 -1.950 1.00 0.00 PROA
|
||||
ATOM 797 HN THR P 53 -0.697 -3.346 -2.740 1.00 0.00 PROA
|
||||
ATOM 798 CA THR P 53 0.953 -4.434 -1.924 1.00 0.00 PROA
|
||||
ATOM 799 HA THR P 53 1.340 -4.338 -0.920 1.00 0.00 PROA
|
||||
ATOM 800 CB THR P 53 0.917 -5.899 -2.352 1.00 0.00 PROA
|
||||
ATOM 801 HB THR P 53 0.392 -6.018 -3.323 1.00 0.00 PROA
|
||||
ATOM 802 OG1 THR P 53 0.195 -6.561 -1.318 1.00 0.00 PROA
|
||||
ATOM 803 HG1 THR P 53 -0.304 -5.878 -0.864 1.00 0.00 PROA
|
||||
ATOM 804 CG2 THR P 53 2.309 -6.523 -2.335 1.00 0.00 PROA
|
||||
ATOM 805 HG21 THR P 53 2.809 -6.315 -1.365 1.00 0.00 PROA
|
||||
ATOM 806 HG22 THR P 53 2.927 -6.092 -3.152 1.00 0.00 PROA
|
||||
ATOM 807 HG23 THR P 53 2.232 -7.624 -2.466 1.00 0.00 PROA
|
||||
ATOM 808 C THR P 53 1.851 -3.649 -2.875 1.00 0.00 PROA
|
||||
ATOM 809 O THR P 53 1.457 -3.322 -3.971 1.00 0.00 PROA
|
||||
ATOM 810 N VAL P 54 3.040 -3.359 -2.425 1.00 0.00 PROA
|
||||
ATOM 811 HN VAL P 54 3.355 -3.618 -1.515 1.00 0.00 PROA
|
||||
ATOM 812 CA VAL P 54 3.996 -2.606 -3.285 1.00 0.00 PROA
|
||||
ATOM 813 HA VAL P 54 3.643 -2.647 -4.305 1.00 0.00 PROA
|
||||
ATOM 814 CB VAL P 54 4.077 -1.152 -2.797 1.00 0.00 PROA
|
||||
ATOM 815 HB VAL P 54 3.054 -0.725 -2.724 1.00 0.00 PROA
|
||||
ATOM 816 CG1 VAL P 54 4.745 -1.115 -1.432 1.00 0.00 PROA
|
||||
ATOM 817 HG11 VAL P 54 5.823 -1.365 -1.528 1.00 0.00 PROA
|
||||
ATOM 818 HG12 VAL P 54 4.268 -1.857 -0.757 1.00 0.00 PROA
|
||||
ATOM 819 HG13 VAL P 54 4.654 -0.098 -0.994 1.00 0.00 PROA
|
||||
ATOM 820 CG2 VAL P 54 4.903 -0.317 -3.776 1.00 0.00 PROA
|
||||
ATOM 821 HG21 VAL P 54 4.346 -0.183 -4.728 1.00 0.00 PROA
|
||||
ATOM 822 HG22 VAL P 54 5.863 -0.832 -3.996 1.00 0.00 PROA
|
||||
ATOM 823 HG23 VAL P 54 5.107 0.684 -3.340 1.00 0.00 PROA
|
||||
ATOM 824 C VAL P 54 5.370 -3.273 -3.189 1.00 0.00 PROA
|
||||
ATOM 825 O VAL P 54 5.701 -3.863 -2.179 1.00 0.00 PROA
|
||||
ATOM 826 N THR P 55 6.137 -3.172 -4.233 1.00 0.00 PROA
|
||||
ATOM 827 HN THR P 55 5.873 -2.683 -5.061 1.00 0.00 PROA
|
||||
ATOM 828 CA THR P 55 7.485 -3.812 -4.217 1.00 0.00 PROA
|
||||
ATOM 829 HA THR P 55 7.793 -3.942 -3.190 1.00 0.00 PROA
|
||||
ATOM 830 CB THR P 55 7.388 -5.161 -4.932 1.00 0.00 PROA
|
||||
ATOM 831 HB THR P 55 7.220 -5.024 -6.021 1.00 0.00 PROA
|
||||
ATOM 832 OG1 THR P 55 6.265 -5.806 -4.338 1.00 0.00 PROA
|
||||
ATOM 833 HG1 THR P 55 5.512 -5.234 -4.505 1.00 0.00 PROA
|
||||
ATOM 834 CG2 THR P 55 8.581 -6.064 -4.621 1.00 0.00 PROA
|
||||
ATOM 835 HG21 THR P 55 9.082 -5.727 -3.688 1.00 0.00 PROA
|
||||
ATOM 836 HG22 THR P 55 9.316 -6.020 -5.453 1.00 0.00 PROA
|
||||
ATOM 837 HG23 THR P 55 8.236 -7.111 -4.481 1.00 0.00 PROA
|
||||
ATOM 838 C THR P 55 8.503 -2.923 -4.940 1.00 0.00 PROA
|
||||
ATOM 839 O THR P 55 8.412 -2.718 -6.134 1.00 0.00 PROA
|
||||
ATOM 840 N GLU P 56 9.454 -2.415 -4.204 1.00 0.00 PROA
|
||||
ATOM 841 HN GLU P 56 9.536 -2.579 -3.224 1.00 0.00 PROA
|
||||
ATOM 842 CA GLU P 56 10.483 -1.540 -4.842 1.00 0.00 PROA
|
||||
ATOM 843 HA GLU P 56 9.981 -0.701 -5.300 1.00 0.00 PROA
|
||||
ATOM 844 CB GLU P 56 11.468 -1.062 -3.776 1.00 0.00 PROA
|
||||
ATOM 845 HB1 GLU P 56 12.427 -1.614 -3.877 1.00 0.00 PROA
|
||||
ATOM 846 HB2 GLU P 56 11.049 -1.253 -2.765 1.00 0.00 PROA
|
||||
ATOM 847 CG GLU P 56 11.713 0.436 -3.959 1.00 0.00 PROA
|
||||
ATOM 848 HG1 GLU P 56 10.788 1.001 -3.716 1.00 0.00 PROA
|
||||
ATOM 849 HG2 GLU P 56 12.002 0.645 -5.011 1.00 0.00 PROA
|
||||
ATOM 850 CD GLU P 56 12.840 0.882 -3.025 1.00 0.00 PROA
|
||||
ATOM 851 OE1 GLU P 56 12.820 0.421 -1.896 1.00 0.00 PROA
|
||||
ATOM 852 OE2 GLU P 56 13.656 1.658 -3.493 1.00 0.00 PROA
|
||||
ATOM 853 C GLU P 56 11.240 -2.317 -5.924 1.00 0.00 PROA
|
||||
ATOM 854 OT1 GLU P 56 10.918 -3.519 -6.124 1.00 0.00 PROA
|
||||
ATOM 855 OT2 GLU P 56 12.147 -1.715 -6.559 1.00 0.00 PROA
|
||||
TER 856 GLU 56
|
||||
END
|
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Load Diff
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Load Diff
File diff suppressed because it is too large
Load Diff
File diff suppressed because it is too large
Load Diff
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Load Diff
|
@ -1,4 +1,5 @@
|
|||
# Created by charmm2lammps v1.9.0 on Mon Oct 3 06:55:39 EDT 2016
|
||||
# Created by charmm2lammps v1.9.1 on Wed Oct 5 18:18:20 EDT 2016
|
||||
# Command: charmm2lammps.pl -water -ions -border=2.0 all27_na 1ac7
|
||||
|
||||
units real
|
||||
neigh_modify delay 2 every 1
|
||||
|
@ -16,18 +17,20 @@ kspace_style pppm 1e-6
|
|||
read_data 1ac7.data
|
||||
|
||||
special_bonds charmm
|
||||
thermo 1
|
||||
thermo 10
|
||||
thermo_style multi
|
||||
timestep 0.5
|
||||
timestep 1.0
|
||||
|
||||
minimize 0.0 0.0 1000 10000
|
||||
minimize 0.0 0.0 50 200
|
||||
|
||||
reset_timestep 0
|
||||
fix 1 all nve
|
||||
fix 2 all shake 1e-6 500 0 m 1.0 a 93
|
||||
velocity all create 0.0 12345678 dist uniform
|
||||
|
||||
restart 10 1ac7.restart1 1ac7.restart2
|
||||
dump 1 all atom 10 1ac7.dump
|
||||
restart 500 1ac7.restart1 1ac7.restart2
|
||||
dump 1 all atom 100 1ac7.dump
|
||||
dump_modify 1 image yes scale yes
|
||||
|
||||
run 20
|
||||
thermo 100
|
||||
run 1000
|
||||
|
|
|
@ -0,0 +1,256 @@
|
|||
LAMMPS (5 Oct 2016)
|
||||
package omp 0
|
||||
WARNING: OpenMP support not enabled during compilation; using 1 thread only. (../fix_omp.cpp:123)
|
||||
# Created by charmm2lammps v1.9.1 on Wed Oct 5 18:18:20 EDT 2016
|
||||
# Command: charmm2lammps.pl -water -ions -border=2.0 all27_na 1ac7
|
||||
|
||||
units real
|
||||
neigh_modify delay 2 every 1
|
||||
|
||||
atom_style full
|
||||
bond_style harmonic
|
||||
angle_style charmm
|
||||
dihedral_style charmm
|
||||
improper_style harmonic
|
||||
|
||||
pair_style lj/charmm/coul/long 8 12
|
||||
pair_modify mix arithmetic
|
||||
kspace_style pppm 1e-6
|
||||
|
||||
read_data 1ac7.data
|
||||
orthogonal box = (-14.087 -1.88253 -5.44214) to (10.545 22.7495 33.9691)
|
||||
2 by 2 by 2 MPI processor grid
|
||||
reading atoms ...
|
||||
1968 atoms
|
||||
scanning bonds ...
|
||||
3 = max bonds/atom
|
||||
scanning angles ...
|
||||
6 = max angles/atom
|
||||
scanning dihedrals ...
|
||||
14 = max dihedrals/atom
|
||||
scanning impropers ...
|
||||
1 = max impropers/atom
|
||||
reading bonds ...
|
||||
1516 bonds
|
||||
reading angles ...
|
||||
1491 angles
|
||||
reading dihedrals ...
|
||||
1659 dihedrals
|
||||
reading impropers ...
|
||||
43 impropers
|
||||
4 = max # of 1-2 neighbors
|
||||
7 = max # of 1-3 neighbors
|
||||
18 = max # of 1-4 neighbors
|
||||
20 = max # of special neighbors
|
||||
|
||||
special_bonds charmm
|
||||
thermo 10
|
||||
thermo_style multi
|
||||
timestep 1.0
|
||||
|
||||
minimize 0.0 0.0 50 200
|
||||
WARNING: Resetting reneighboring criteria during minimization (../min.cpp:168)
|
||||
PPPM initialization ...
|
||||
WARNING: Using 12-bit tables for long-range coulomb (../kspace.cpp:316)
|
||||
G vector (1/distance) = 0.280406
|
||||
grid = 30 30 40
|
||||
stencil order = 5
|
||||
estimated absolute RMS force accuracy = 0.000302577
|
||||
estimated relative force accuracy = 9.11202e-07
|
||||
using double precision FFTs
|
||||
3d grid and FFT values/proc = 13068 4500
|
||||
Last active /omp style is kspace_style pppm/omp
|
||||
Neighbor list info ...
|
||||
1 neighbor list requests
|
||||
update every 1 steps, delay 0 steps, check yes
|
||||
max neighbors/atom: 2000, page size: 100000
|
||||
master list distance cutoff = 14
|
||||
ghost atom cutoff = 14
|
||||
binsize = 7 -> bins = 4 4 6
|
||||
Memory usage per processor = 15.8614 Mbytes
|
||||
---------------- Step 0 ----- CPU = 0.0000 (sec) ----------------
|
||||
TotEng = 16313.1962 KinEng = 0.0000 Temp = 0.0000
|
||||
PotEng = 16313.1962 E_bond = 12014.3479 E_angle = 5414.5475
|
||||
E_dihed = 557.2338 E_impro = 0.0516 E_vdwl = 1176.0283
|
||||
E_coul = 28218.0485 E_long = -31067.0615 Press = -18022.1296
|
||||
---------------- Step 10 ----- CPU = 0.1081 (sec) ----------------
|
||||
TotEng = -1447.9072 KinEng = 0.0000 Temp = 0.0000
|
||||
PotEng = -1447.9072 E_bond = 247.8926 E_angle = 2176.8245
|
||||
E_dihed = 555.8870 E_impro = 1.7628 E_vdwl = -407.3892
|
||||
E_coul = 27746.6549 E_long = -31769.5399 Press = -1411.7232
|
||||
---------------- Step 20 ----- CPU = 0.2182 (sec) ----------------
|
||||
TotEng = -4807.5054 KinEng = 0.0000 Temp = 0.0000
|
||||
PotEng = -4807.5054 E_bond = 177.3593 E_angle = 555.9353
|
||||
E_dihed = 551.4306 E_impro = 2.6640 E_vdwl = -581.3001
|
||||
E_coul = 27120.3184 E_long = -32633.9130 Press = -13576.9371
|
||||
---------------- Step 30 ----- CPU = 0.3443 (sec) ----------------
|
||||
TotEng = -5555.1803 KinEng = 0.0000 Temp = 0.0000
|
||||
PotEng = -5555.1803 E_bond = 147.6057 E_angle = 459.3239
|
||||
E_dihed = 539.1126 E_impro = 2.8843 E_vdwl = -576.4747
|
||||
E_coul = 26797.8386 E_long = -32925.4706 Press = -12870.0319
|
||||
---------------- Step 40 ----- CPU = 0.4657 (sec) ----------------
|
||||
TotEng = -5973.0779 KinEng = 0.0000 Temp = 0.0000
|
||||
PotEng = -5973.0779 E_bond = 150.6611 E_angle = 441.4999
|
||||
E_dihed = 528.1431 E_impro = 3.1819 E_vdwl = -519.1875
|
||||
E_coul = 26477.1520 E_long = -33054.5284 Press = -13277.6629
|
||||
---------------- Step 50 ----- CPU = 0.5988 (sec) ----------------
|
||||
TotEng = -6363.9506 KinEng = 0.0000 Temp = 0.0000
|
||||
PotEng = -6363.9506 E_bond = 165.0850 E_angle = 401.3082
|
||||
E_dihed = 518.3931 E_impro = 3.2379 E_vdwl = -463.1261
|
||||
E_coul = 26138.9684 E_long = -33127.8170 Press = -13085.4188
|
||||
Loop time of 0.598905 on 8 procs for 50 steps with 1968 atoms
|
||||
|
||||
99.2% CPU use with 8 MPI tasks x 1 OpenMP threads
|
||||
|
||||
Minimization stats:
|
||||
Stopping criterion = max iterations
|
||||
Energy initial, next-to-last, final =
|
||||
16313.1961904 -6328.33883947 -6363.95060584
|
||||
Force two-norm initial, final = 9108.55 292.099
|
||||
Force max component initial, final = 2254.31 67.3492
|
||||
Final line search alpha, max atom move = 0.00149026 0.100368
|
||||
Iterations, force evaluations = 50 75
|
||||
|
||||
MPI task timing breakdown:
|
||||
Section | min time | avg time | max time |%varavg| %total
|
||||
---------------------------------------------------------------
|
||||
Pair | 0.24051 | 0.28255 | 0.35023 | 7.1 | 47.18
|
||||
Bond | 0.0022576 | 0.0057876 | 0.0081606 | 2.6 | 0.97
|
||||
Kspace | 0.18978 | 0.25595 | 0.29717 | 7.2 | 42.74
|
||||
Neigh | 0.015369 | 0.01561 | 0.015768 | 0.1 | 2.61
|
||||
Comm | 0.031344 | 0.032818 | 0.034241 | 0.5 | 5.48
|
||||
Output | 0.00034261 | 0.00035512 | 0.00043511 | 0.2 | 0.06
|
||||
Modify | 0.0011175 | 0.001414 | 0.0016975 | 0.5 | 0.24
|
||||
Other | | 0.00442 | | | 0.74
|
||||
|
||||
Nlocal: 246 ave 274 max 226 min
|
||||
Histogram: 2 1 0 1 1 0 1 1 0 1
|
||||
Nghost: 6331 ave 6591 max 6075 min
|
||||
Histogram: 1 1 0 0 2 2 0 0 1 1
|
||||
Neighs: 116074 ave 137552 max 99519 min
|
||||
Histogram: 1 2 1 1 0 0 0 1 0 2
|
||||
|
||||
Total # of neighbors = 928592
|
||||
Ave neighs/atom = 471.846
|
||||
Ave special neighs/atom = 4.4065
|
||||
Neighbor list builds = 3
|
||||
Dangerous builds = 0
|
||||
|
||||
reset_timestep 0
|
||||
fix 1 all nve
|
||||
fix 2 all shake 1e-6 500 0 m 1.0 a 93
|
||||
112 = # of size 2 clusters
|
||||
26 = # of size 3 clusters
|
||||
6 = # of size 4 clusters
|
||||
475 = # of frozen angles
|
||||
velocity all create 0.0 12345678 dist uniform
|
||||
|
||||
restart 500 1ac7.restart1 1ac7.restart2
|
||||
dump 1 all atom 100 1ac7.dump
|
||||
dump_modify 1 image yes scale yes
|
||||
|
||||
thermo 100
|
||||
run 1000
|
||||
PPPM initialization ...
|
||||
WARNING: Using 12-bit tables for long-range coulomb (../kspace.cpp:316)
|
||||
G vector (1/distance) = 0.280406
|
||||
grid = 30 30 40
|
||||
stencil order = 5
|
||||
estimated absolute RMS force accuracy = 0.000302577
|
||||
estimated relative force accuracy = 9.11202e-07
|
||||
using double precision FFTs
|
||||
3d grid and FFT values/proc = 13068 4500
|
||||
Last active /omp style is kspace_style pppm/omp
|
||||
Neighbor list info ...
|
||||
1 neighbor list requests
|
||||
update every 1 steps, delay 2 steps, check yes
|
||||
max neighbors/atom: 2000, page size: 100000
|
||||
master list distance cutoff = 14
|
||||
ghost atom cutoff = 14
|
||||
binsize = 7 -> bins = 4 4 6
|
||||
Memory usage per processor = 16.6281 Mbytes
|
||||
---------------- Step 0 ----- CPU = 0.0000 (sec) ----------------
|
||||
TotEng = -6507.5910 KinEng = 0.0000 Temp = 0.0000
|
||||
PotEng = -6507.5910 E_bond = 107.6907 E_angle = 315.0621
|
||||
E_dihed = 518.3931 E_impro = 3.2379 E_vdwl = -463.1261
|
||||
E_coul = 26138.9684 E_long = -33127.8170 Press = -12385.0996
|
||||
---------------- Step 100 ----- CPU = 0.6002 (sec) ----------------
|
||||
TotEng = -6239.1679 KinEng = 693.7285 Temp = 162.5977
|
||||
PotEng = -6932.8964 E_bond = 97.8328 E_angle = 278.8843
|
||||
E_dihed = 517.0395 E_impro = 2.5171 E_vdwl = 25.4169
|
||||
E_coul = 25297.7912 E_long = -33152.3783 Press = -7082.4023
|
||||
---------------- Step 200 ----- CPU = 1.2143 (sec) ----------------
|
||||
TotEng = -6239.2467 KinEng = 973.1878 Temp = 228.0980
|
||||
PotEng = -7212.4345 E_bond = 100.5993 E_angle = 320.4657
|
||||
E_dihed = 524.2274 E_impro = 2.4292 E_vdwl = 599.6228
|
||||
E_coul = 24399.1819 E_long = -33158.9608 Press = -876.3929
|
||||
---------------- Step 300 ----- CPU = 1.8629 (sec) ----------------
|
||||
TotEng = -6239.3074 KinEng = 1080.8940 Temp = 253.3425
|
||||
PotEng = -7320.2014 E_bond = 109.8163 E_angle = 341.6580
|
||||
E_dihed = 522.9161 E_impro = 3.3533 E_vdwl = 548.9557
|
||||
E_coul = 24315.8677 E_long = -33162.7685 Press = -2189.9473
|
||||
---------------- Step 400 ----- CPU = 2.5209 (sec) ----------------
|
||||
TotEng = -6239.4210 KinEng = 1085.2885 Temp = 254.3725
|
||||
PotEng = -7324.7096 E_bond = 95.4880 E_angle = 333.0840
|
||||
E_dihed = 531.5762 E_impro = 4.2236 E_vdwl = 547.4841
|
||||
E_coul = 24332.2081 E_long = -33168.7736 Press = -1741.7706
|
||||
---------------- Step 500 ----- CPU = 3.1762 (sec) ----------------
|
||||
TotEng = -6239.4511 KinEng = 1151.8207 Temp = 269.9665
|
||||
PotEng = -7391.2719 E_bond = 108.9390 E_angle = 328.6496
|
||||
E_dihed = 528.8096 E_impro = 3.4706 E_vdwl = 499.9982
|
||||
E_coul = 24309.7254 E_long = -33170.8642 Press = -2725.2316
|
||||
---------------- Step 600 ----- CPU = 3.8115 (sec) ----------------
|
||||
TotEng = -6239.4095 KinEng = 1129.5086 Temp = 264.7369
|
||||
PotEng = -7368.9182 E_bond = 102.3632 E_angle = 346.1347
|
||||
E_dihed = 534.3048 E_impro = 3.7134 E_vdwl = 473.9210
|
||||
E_coul = 24346.7523 E_long = -33176.1075 Press = -2684.1848
|
||||
---------------- Step 700 ----- CPU = 4.4501 (sec) ----------------
|
||||
TotEng = -6239.4955 KinEng = 1132.8803 Temp = 265.5272
|
||||
PotEng = -7372.3758 E_bond = 103.5625 E_angle = 340.8027
|
||||
E_dihed = 535.9840 E_impro = 4.0448 E_vdwl = 488.9549
|
||||
E_coul = 24323.6826 E_long = -33169.4072 Press = -2041.9019
|
||||
---------------- Step 800 ----- CPU = 5.0783 (sec) ----------------
|
||||
TotEng = -6239.5236 KinEng = 1192.2677 Temp = 279.4465
|
||||
PotEng = -7431.7912 E_bond = 110.5122 E_angle = 329.8173
|
||||
E_dihed = 534.5353 E_impro = 5.5900 E_vdwl = 541.3805
|
||||
E_coul = 24227.6695 E_long = -33181.2961 Press = -1628.5627
|
||||
---------------- Step 900 ----- CPU = 5.7072 (sec) ----------------
|
||||
TotEng = -6239.5270 KinEng = 1162.7914 Temp = 272.5378
|
||||
PotEng = -7402.3184 E_bond = 104.9538 E_angle = 347.6531
|
||||
E_dihed = 536.4713 E_impro = 4.6832 E_vdwl = 483.3306
|
||||
E_coul = 24295.7423 E_long = -33175.1528 Press = -1959.1567
|
||||
---------------- Step 1000 ----- CPU = 6.3345 (sec) ----------------
|
||||
TotEng = -6239.5020 KinEng = 1128.3312 Temp = 264.4609
|
||||
PotEng = -7367.8332 E_bond = 102.9814 E_angle = 352.0690
|
||||
E_dihed = 540.5086 E_impro = 3.6712 E_vdwl = 495.7763
|
||||
E_coul = 24316.4138 E_long = -33179.2534 Press = -1881.5655
|
||||
Loop time of 6.33458 on 8 procs for 1000 steps with 1968 atoms
|
||||
|
||||
Performance: 13.639 ns/day, 1.760 hours/ns, 157.864 timesteps/s
|
||||
99.6% CPU use with 8 MPI tasks x 1 OpenMP threads
|
||||
|
||||
MPI task timing breakdown:
|
||||
Section | min time | avg time | max time |%varavg| %total
|
||||
---------------------------------------------------------------
|
||||
Pair | 2.2335 | 2.5532 | 3.1707 | 18.5 | 40.31
|
||||
Bond | 0.01158 | 0.051889 | 0.080867 | 9.9 | 0.82
|
||||
Kspace | 2.1965 | 2.7773 | 3.0728 | 16.7 | 43.84
|
||||
Neigh | 0.24407 | 0.24588 | 0.24863 | 0.3 | 3.88
|
||||
Comm | 0.36894 | 0.37849 | 0.39142 | 1.3 | 5.97
|
||||
Output | 0.0083764 | 0.0085732 | 0.0087767 | 0.1 | 0.14
|
||||
Modify | 0.25864 | 0.28389 | 0.2976 | 2.5 | 4.48
|
||||
Other | | 0.03539 | | | 0.56
|
||||
|
||||
Nlocal: 246 ave 290 max 210 min
|
||||
Histogram: 1 1 0 1 2 0 2 0 0 1
|
||||
Nghost: 6160.5 ave 6438 max 5877 min
|
||||
Histogram: 2 0 0 1 0 2 0 1 1 1
|
||||
Neighs: 116321 ave 144703 max 98946 min
|
||||
Histogram: 1 2 1 1 0 2 0 0 0 1
|
||||
|
||||
Total # of neighbors = 930570
|
||||
Ave neighs/atom = 472.851
|
||||
Ave special neighs/atom = 4.4065
|
||||
Neighbor list builds = 46
|
||||
Dangerous builds = 0
|
||||
Total wall time: 0:00:07
|
File diff suppressed because it is too large
Load Diff
File diff suppressed because it is too large
Load Diff
Loading…
Reference in New Issue