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git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@960 f3b2605a-c512-4ea7-a41b-209d697bcdaa

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sjplimp 2007-10-05 15:39:59 +00:00
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108
doc/fix.html
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@ -73,60 +73,60 @@ for individual fixes for info on which ones can be restarted.
</P>
<P>Here is an alphabetic list of fix styles available in LAMMPS:
</P>
<UL><LI><A HREF = "fix_addforce.html">fix addforce</A> - add a force to each atom
<LI><A HREF = "fix_aveforce.html">fix aveforce</A> - add an averaged force to each atom
<LI><A HREF = "fix_ave_atom.html">fix ave/atom</A> - compute per-atom time-averaged quantities
<LI><A HREF = "fix_ave_spatial.html">fix ave/spatial</A> - output per-atom quantities by layer
<LI><A HREF = "fix_ave_time.html">fix ave/time</A> - output time-averaged compute quantities
<LI><A HREF = "fix_com.html">fix com</A> - compute a center-of-mass
<LI><A HREF = "fix_deform.html">fix deform</A> - change the simulation box size/shape
<LI><A HREF = "fix_deposit.html">fix deposit</A> - add new atoms above a surface
<LI><A HREF = "fix_drag.html">fix drag</A> - drag atoms towards a defined coordinate
<LI><A HREF = "fix_efield.html">fix efield</A> - impose electric field on system
<LI><A HREF = "fix_enforce2d.html">fix enforce2d</A> - zero out z-dimension velocity and force
<LI><A HREF = "fix_freeze.html">fix freeze</A> - freeze atoms in a granular simulation
<LI><A HREF = "fix_gran_diag.html">fix gran/diag</A> - compute granular diagnostics
<LI><A HREF = "fix_gravity.html">fix gravity</A> - add gravity to atoms in a granular simulation
<LI><A HREF = "fix_gyration.html">fix gyration</A> - compute radius of gyration
<LI><A HREF = "fix_gyration.html">fix heat</A> - add/subtract momentum-conserving heat
<LI><A HREF = "fix_indent.html">fix indent</A> - impose force due to an indenter
<LI><A HREF = "fix_langevin.html">fix langevin</A> - Langevin temperature control
<LI><A HREF = "fix_lineforce.html">fix lineforce</A> - constrain atoms to move in a line
<LI><A HREF = "fix_msd.html">fix msd</A> - compute mean-squared displacement (i.e. diffusion coefficient)
<LI><A HREF = "fix_momentum.html">fix momentum</A> - zero the linear and/or angular momentum of a group of atoms
<LI><A HREF = "fix_nph.html">fix nph</A> - constant NPH time integration via Nose/Hoover
<LI><A HREF = "fix_npt.html">fix npt</A> - constant NPT time integration via Nose/Hoover
<LI><A HREF = "fix_npt_asphere.html">fix npt/asphere</A> - NPT for aspherical particles
<LI><A HREF = "fix_nve.html">fix nve</A> - constant NVE time integration
<LI><A HREF = "fix_nve_asphere.html">fix nve/asphere</A> - NVT for aspherical particles
<LI><A HREF = "fix_nve_dipole.html">fix nve/dipole</A> - NVE for point dipolar particles
<LI><A HREF = "fix_nve_gran.html">fix nve/gran</A> - NVE for granular particles
<LI><A HREF = "fix_nve_limit.html">fix nve/limit</A> - NVE with limited step length
<LI><A HREF = "fix_nve_noforce.html">fix nve/noforce</A> - NVE without forces (v only)
<LI><A HREF = "fix_nvt.html">fix nvt</A> - constant NVT time integration via Nose/Hoover
<LI><A HREF = "fix_nvt_asphere.html">fix nvt/asphere</A> - NVT for aspherical particles
<LI><A HREF = "fix_nvt_sllod.html">fix nvt/sllod</A> - NVT for NEMD with SLLOD equations
<LI><A HREF = "fix_orient_fcc.html">fix orient/fcc</A> - add grain boundary migration force
<LI><A HREF = "fix_planeforce.html">fix planeforce</A> - constrain atoms to move in a plane
<LI><A HREF = "fix_poems.html">fix poems</A> - constrain clusters of atoms to move as coupled rigid bodies
<LI><A HREF = "fix_pour.html">fix pour</A> - pour new atoms into a granular simulation domain
<LI><A HREF = "fix_print.html">fix print</A> - print text and variables during a simulation
<LI><A HREF = "fix_rdf.html">fix rdf</A> - compute radial distribution functions
<LI><A HREF = "fix_recenter.html">fix recenter</A> - constrain the center-of-mass position of a group of atoms
<LI><A HREF = "fix_rigid.html">fix rigid</A> - constrain one or more clusters of atoms to move as a rigid body
<LI><A HREF = "fix_setforce.html">fix setforce</A> - set the force on each atom
<LI><A HREF = "fix_shake.html">fix shake</A> - SHAKE constraints on bonds and/or angles
<LI><A HREF = "fix_spring.html">fix spring</A> - apply harmonic spring force to group of atoms
<LI><A HREF = "fix_spring_rg.html">fix spring/rg</A> - spring on radius of gyration of group of atoms
<LI><A HREF = "fix_spring_self.html">fix spring/self</A> - spring from each atom to its origin
<LI><A HREF = "fix_temp_rescale.html">fix temp/rescale</A> - temperature control by velocity rescaling
<LI><A HREF = "fix_tmd.html">fix tmd</A> - guide a group of atoms to a new configuration
<LI><A HREF = "fix_viscous.html">fix viscous</A> - viscous damping for granular simulations
<LI><A HREF = "fix_wall_gran.html">fix wall/gran</A> - frictional wall(s) for granular simulations
<LI><A HREF = "fix_wall_lj126.html">fix wall/lj126</A> - Lennard-Jones 12-6 wall
<LI><A HREF = "fix_wall_lj93.html">fix wall/lj93</A> - Lennard-Jones 9-3 wall
<LI><A HREF = "fix_wall_reflect.html">fix wall/reflect</A> - reflecting wall(s)
<LI><A HREF = "fix_wiggle.html">fix wiggle</A> - oscillate walls and frozen atoms
<UL><LI><A HREF = "fix_addforce.html">addforce</A> - add a force to each atom
<LI><A HREF = "fix_aveforce.html">aveforce</A> - add an averaged force to each atom
<LI><A HREF = "fix_ave_atom.html">ave/atom</A> - compute per-atom time-averaged quantities
<LI><A HREF = "fix_ave_spatial.html">ave/spatial</A> - output per-atom quantities by layer
<LI><A HREF = "fix_ave_time.html">ave/time</A> - output time-averaged compute quantities
<LI><A HREF = "fix_com.html">com</A> - compute a center-of-mass
<LI><A HREF = "fix_deform.html">deform</A> - change the simulation box size/shape
<LI><A HREF = "fix_deposit.html">deposit</A> - add new atoms above a surface
<LI><A HREF = "fix_drag.html">drag</A> - drag atoms towards a defined coordinate
<LI><A HREF = "fix_efield.html">efield</A> - impose electric field on system
<LI><A HREF = "fix_enforce2d.html">enforce2d</A> - zero out z-dimension velocity and force
<LI><A HREF = "fix_freeze.html">freeze</A> - freeze atoms in a granular simulation
<LI><A HREF = "fix_gran_diag.html">gran/diag</A> - compute granular diagnostics
<LI><A HREF = "fix_gravity.html">gravity</A> - add gravity to atoms in a granular simulation
<LI><A HREF = "fix_gyration.html">gyration</A> - compute radius of gyration
<LI><A HREF = "fix_gyration.html">heat</A> - add/subtract momentum-conserving heat
<LI><A HREF = "fix_indent.html">indent</A> - impose force due to an indenter
<LI><A HREF = "fix_langevin.html">langevin</A> - Langevin temperature control
<LI><A HREF = "fix_lineforce.html">lineforce</A> - constrain atoms to move in a line
<LI><A HREF = "fix_msd.html">msd</A> - compute mean-squared displacement (i.e. diffusion coefficient)
<LI><A HREF = "fix_momentum.html">momentum</A> - zero the linear and/or angular momentum of a group of atoms
<LI><A HREF = "fix_nph.html">nph</A> - constant NPH time integration via Nose/Hoover
<LI><A HREF = "fix_npt.html">npt</A> - constant NPT time integration via Nose/Hoover
<LI><A HREF = "fix_npt_asphere.html">npt/asphere</A> - NPT for aspherical particles
<LI><A HREF = "fix_nve.html">nve</A> - constant NVE time integration
<LI><A HREF = "fix_nve_asphere.html">nve/asphere</A> - NVT for aspherical particles
<LI><A HREF = "fix_nve_dipole.html">nve/dipole</A> - NVE for point dipolar particles
<LI><A HREF = "fix_nve_gran.html">nve/gran</A> - NVE for granular particles
<LI><A HREF = "fix_nve_limit.html">nve/limit</A> - NVE with limited step length
<LI><A HREF = "fix_nve_noforce.html">nve/noforce</A> - NVE without forces (v only)
<LI><A HREF = "fix_nvt.html">nvt</A> - constant NVT time integration via Nose/Hoover
<LI><A HREF = "fix_nvt_asphere.html">nvt/asphere</A> - NVT for aspherical particles
<LI><A HREF = "fix_nvt_sllod.html">nvt/sllod</A> - NVT for NEMD with SLLOD equations
<LI><A HREF = "fix_orient_fcc.html">orient/fcc</A> - add grain boundary migration force
<LI><A HREF = "fix_planeforce.html">planeforce</A> - constrain atoms to move in a plane
<LI><A HREF = "fix_poems.html">poems</A> - constrain clusters of atoms to move as coupled rigid bodies
<LI><A HREF = "fix_pour.html">pour</A> - pour new atoms into a granular simulation domain
<LI><A HREF = "fix_print.html">print</A> - print text and variables during a simulation
<LI><A HREF = "fix_rdf.html">rdf</A> - compute radial distribution functions
<LI><A HREF = "fix_recenter.html">recenter</A> - constrain the center-of-mass position of a group of atoms
<LI><A HREF = "fix_rigid.html">rigid</A> - constrain one or more clusters of atoms to move as a rigid body
<LI><A HREF = "fix_setforce.html">setforce</A> - set the force on each atom
<LI><A HREF = "fix_shake.html">shake</A> - SHAKE constraints on bonds and/or angles
<LI><A HREF = "fix_spring.html">spring</A> - apply harmonic spring force to group of atoms
<LI><A HREF = "fix_spring_rg.html">spring/rg</A> - spring on radius of gyration of group of atoms
<LI><A HREF = "fix_spring_self.html">spring/self</A> - spring from each atom to its origin
<LI><A HREF = "fix_temp_rescale.html">temp/rescale</A> - temperature control by velocity rescaling
<LI><A HREF = "fix_tmd.html">tmd</A> - guide a group of atoms to a new configuration
<LI><A HREF = "fix_viscous.html">viscous</A> - viscous damping for granular simulations
<LI><A HREF = "fix_wall_gran.html">wall/gran</A> - frictional wall(s) for granular simulations
<LI><A HREF = "fix_wall_lj126.html">wall/lj126</A> - Lennard-Jones 12-6 wall
<LI><A HREF = "fix_wall_lj93.html">wall/lj93</A> - Lennard-Jones 9-3 wall
<LI><A HREF = "fix_wall_reflect.html">wall/reflect</A> - reflecting wall(s)
<LI><A HREF = "fix_wiggle.html">wiggle</A> - oscillate walls and frozen atoms
</UL>
<P>There are also additional fix styles submitted by users which are
included in the LAMMPS distribution. The list of these with links to

108
doc/fix.txt
View File

@ -70,68 +70,68 @@ for individual fixes for info on which ones can be restarted.
Here is an alphabetic list of fix styles available in LAMMPS:
"fix addforce"_fix_addforce.html - add a force to each atom
"fix aveforce"_fix_aveforce.html - add an averaged force to each atom
"fix ave/atom"_fix_ave_atom.html - compute per-atom time-averaged quantities
"fix ave/spatial"_fix_ave_spatial.html - output per-atom quantities by layer
"fix ave/time"_fix_ave_time.html - output time-averaged compute quantities
"fix com"_fix_com.html - compute a center-of-mass
"fix deform"_fix_deform.html - change the simulation box size/shape
"fix deposit"_fix_deposit.html - add new atoms above a surface
"fix drag"_fix_drag.html - drag atoms towards a defined coordinate
"fix efield"_fix_efield.html - impose electric field on system
"fix enforce2d"_fix_enforce2d.html - zero out z-dimension velocity and force
"fix freeze"_fix_freeze.html - freeze atoms in a granular simulation
"fix gran/diag"_fix_gran_diag.html - compute granular diagnostics
"fix gravity"_fix_gravity.html - add gravity to atoms in a granular simulation
"fix gyration"_fix_gyration.html - compute radius of gyration
"fix heat"_fix_gyration.html - add/subtract momentum-conserving heat
"fix indent"_fix_indent.html - impose force due to an indenter
"fix langevin"_fix_langevin.html - Langevin temperature control
"fix lineforce"_fix_lineforce.html - constrain atoms to move in a line
"fix msd"_fix_msd.html - compute mean-squared displacement \
"addforce"_fix_addforce.html - add a force to each atom
"aveforce"_fix_aveforce.html - add an averaged force to each atom
"ave/atom"_fix_ave_atom.html - compute per-atom time-averaged quantities
"ave/spatial"_fix_ave_spatial.html - output per-atom quantities by layer
"ave/time"_fix_ave_time.html - output time-averaged compute quantities
"com"_fix_com.html - compute a center-of-mass
"deform"_fix_deform.html - change the simulation box size/shape
"deposit"_fix_deposit.html - add new atoms above a surface
"drag"_fix_drag.html - drag atoms towards a defined coordinate
"efield"_fix_efield.html - impose electric field on system
"enforce2d"_fix_enforce2d.html - zero out z-dimension velocity and force
"freeze"_fix_freeze.html - freeze atoms in a granular simulation
"gran/diag"_fix_gran_diag.html - compute granular diagnostics
"gravity"_fix_gravity.html - add gravity to atoms in a granular simulation
"gyration"_fix_gyration.html - compute radius of gyration
"heat"_fix_gyration.html - add/subtract momentum-conserving heat
"indent"_fix_indent.html - impose force due to an indenter
"langevin"_fix_langevin.html - Langevin temperature control
"lineforce"_fix_lineforce.html - constrain atoms to move in a line
"msd"_fix_msd.html - compute mean-squared displacement \
(i.e. diffusion coefficient)
"fix momentum"_fix_momentum.html - zero the linear and/or angular momentum \
"momentum"_fix_momentum.html - zero the linear and/or angular momentum \
of a group of atoms
"fix nph"_fix_nph.html - constant NPH time integration via Nose/Hoover
"fix npt"_fix_npt.html - constant NPT time integration via Nose/Hoover
"fix npt/asphere"_fix_npt_asphere.html - NPT for aspherical particles
"fix nve"_fix_nve.html - constant NVE time integration
"fix nve/asphere"_fix_nve_asphere.html - NVT for aspherical particles
"fix nve/dipole"_fix_nve_dipole.html - NVE for point dipolar particles
"fix nve/gran"_fix_nve_gran.html - NVE for granular particles
"fix nve/limit"_fix_nve_limit.html - NVE with limited step length
"fix nve/noforce"_fix_nve_noforce.html - NVE without forces (v only)
"fix nvt"_fix_nvt.html - constant NVT time integration via Nose/Hoover
"fix nvt/asphere"_fix_nvt_asphere.html - NVT for aspherical particles
"fix nvt/sllod"_fix_nvt_sllod.html - NVT for NEMD with SLLOD equations
"fix orient/fcc"_fix_orient_fcc.html - add grain boundary migration force
"fix planeforce"_fix_planeforce.html - constrain atoms to move in a plane
"fix poems"_fix_poems.html - constrain clusters of atoms to move \
"nph"_fix_nph.html - constant NPH time integration via Nose/Hoover
"npt"_fix_npt.html - constant NPT time integration via Nose/Hoover
"npt/asphere"_fix_npt_asphere.html - NPT for aspherical particles
"nve"_fix_nve.html - constant NVE time integration
"nve/asphere"_fix_nve_asphere.html - NVT for aspherical particles
"nve/dipole"_fix_nve_dipole.html - NVE for point dipolar particles
"nve/gran"_fix_nve_gran.html - NVE for granular particles
"nve/limit"_fix_nve_limit.html - NVE with limited step length
"nve/noforce"_fix_nve_noforce.html - NVE without forces (v only)
"nvt"_fix_nvt.html - constant NVT time integration via Nose/Hoover
"nvt/asphere"_fix_nvt_asphere.html - NVT for aspherical particles
"nvt/sllod"_fix_nvt_sllod.html - NVT for NEMD with SLLOD equations
"orient/fcc"_fix_orient_fcc.html - add grain boundary migration force
"planeforce"_fix_planeforce.html - constrain atoms to move in a plane
"poems"_fix_poems.html - constrain clusters of atoms to move \
as coupled rigid bodies
"fix pour"_fix_pour.html - pour new atoms into a granular simulation domain
"fix print"_fix_print.html - print text and variables during a simulation
"fix rdf"_fix_rdf.html - compute radial distribution functions
"fix recenter"_fix_recenter.html - constrain the center-of-mass position \
"pour"_fix_pour.html - pour new atoms into a granular simulation domain
"print"_fix_print.html - print text and variables during a simulation
"rdf"_fix_rdf.html - compute radial distribution functions
"recenter"_fix_recenter.html - constrain the center-of-mass position \
of a group of atoms
"fix rigid"_fix_rigid.html - constrain one or more clusters of atoms to \
"rigid"_fix_rigid.html - constrain one or more clusters of atoms to \
move as a rigid body
"fix setforce"_fix_setforce.html - set the force on each atom
"fix shake"_fix_shake.html - SHAKE constraints on bonds and/or angles
"fix spring"_fix_spring.html - apply harmonic spring force to group of atoms
"fix spring/rg"_fix_spring_rg.html - spring on radius of gyration of \
"setforce"_fix_setforce.html - set the force on each atom
"shake"_fix_shake.html - SHAKE constraints on bonds and/or angles
"spring"_fix_spring.html - apply harmonic spring force to group of atoms
"spring/rg"_fix_spring_rg.html - spring on radius of gyration of \
group of atoms
"fix spring/self"_fix_spring_self.html - spring from each atom to its origin
"fix temp/rescale"_fix_temp_rescale.html - temperature control by \
"spring/self"_fix_spring_self.html - spring from each atom to its origin
"temp/rescale"_fix_temp_rescale.html - temperature control by \
velocity rescaling
"fix tmd"_fix_tmd.html - guide a group of atoms to a new configuration
"fix viscous"_fix_viscous.html - viscous damping for granular simulations
"fix wall/gran"_fix_wall_gran.html - frictional wall(s) for \
"tmd"_fix_tmd.html - guide a group of atoms to a new configuration
"viscous"_fix_viscous.html - viscous damping for granular simulations
"wall/gran"_fix_wall_gran.html - frictional wall(s) for \
granular simulations
"fix wall/lj126"_fix_wall_lj126.html - Lennard-Jones 12-6 wall
"fix wall/lj93"_fix_wall_lj93.html - Lennard-Jones 9-3 wall
"fix wall/reflect"_fix_wall_reflect.html - reflecting wall(s)
"fix wiggle"_fix_wiggle.html - oscillate walls and frozen atoms :ul
"wall/lj126"_fix_wall_lj126.html - Lennard-Jones 12-6 wall
"wall/lj93"_fix_wall_lj93.html - Lennard-Jones 9-3 wall
"wall/reflect"_fix_wall_reflect.html - reflecting wall(s)
"wiggle"_fix_wiggle.html - oscillate walls and frozen atoms :ul
There are also additional fix styles submitted by users which are
included in the LAMMPS distribution. The list of these with links to